rna2387, rna2387 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2387
Unique Name	rna2387
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	669
Alignment location	CM002459.1:262809..264653 +

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Properties


Property Name	Value
Product	wd40 repeat-containing protein
Orig transcript id	gnl\|cribi\|Naga_100004g18.9145.mrna
Orig protein id	gnl\|cribi\|Naga_100004g18.9145
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:262809..264653 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g18	gene2281	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2387	rna2387-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28214.1	cds2379	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:262809..264653+
coding sequence from alignment at CM002459.1:262809..264653+

mRNA sequence

>rna2387 ID=rna2387|Name=rna2387|organism=Nannochloropsis gaditana|type=mRNA|length=669bp
ATGGGGAAAGCCAAAAAGGCGCGCGCCTCGCGTCACGCCCGGCATGACCC
CGTAGGATTTCCCTCAGGCCGGACCGCGCGTTCTTCTTCCTGTGCGGATA
CAGAACAGGAAACAAGACAACATGCGCATCAACATCAAAAAGCACATAAG
CTCTTGGAGGAACTCCGGAGTCCTGATTTGGCAAGAAAGGAAGCGGCGGT
CGTAGCCATGGCTCAATTGCTTGCTGCAGGAGATGTGGATGGAGATGAGG
AGGTGGCGGGCCTAAACGGGAACGAAAGGGCGGACCGAGGGCCAATGAGG
GCTTCCAAAGGGAGTGCTCGCTTTCGGGCCCTGATTCACAAACTGGTGGA
CGGAGGCGCGGTTGATTTATTGATGGAGCGCATGTTTGATACGGCATCCA
CAGTCAGGCTGCACGGGGCAGGAGCATTACGGTACGTCCACATCAAGAAT
GAGGTTTTTGGGGAATTGGAATCCCTCATGCCTGAAAGCAAAGGGCGGAA
ATGGCCTGTGCACGTGAGTCAAGGATGCAACAAGATATTTGCTACTCTTG
AAGCGTCTCGTTCGAGTCGCCTTGATGACAACCTATCCACCAAGATCGCT
GAGACACGAATATGGCGTCGCTGCGGGACCGACGCGTCACCTCCCAGATG
GTGCAAGCGGGCGTCTTAA

protein sequence of rna2387

>rna2387-protein ID=rna2387-protein|Name=rna2387|organism=Nannochloropsis gaditana|type=polypeptide|length=349bp
MKRESFHAANTGGGGLGGPIPDAVFQTQFQCCSVEFSPFQEARLAVATAQ
YFGIIGNGRQHILEIGPDGNLREIRSFLTQEGLYDCCWSEANQNQLVSAS
ADGSLKLWDVMTSDGYPVAHWQEHSAEVSSVHWNQVVKTNFLSASWDGSI
KLWDPHHPTSLSTYCGHTGCVYAGIHSPRHPHRFLSCGTDGSLRIWDTKL
PPSHATSLGLGRAEGGAVQVVRAHEGEVLSADWDKYQDFLVYTGGVDRSI
KIWDLRRPSLPLGFLHGHGYAVRRLKTSPHQEGVLGSVSYDMSCRVWGPT
RAGGRAGELWRCEEHTEFVQGLDFHLFWPGRIATCGWDRRVCVWTLPLP

mRNA from alignment at CM002459.1:262809..264653+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2387 ID=rna2387|Name=rna2387|organism=Nannochloropsis gaditana|type=mRNA|length=1845bp|location=Sequence derived from alignment at CM002459.1:262809..264653+ (Nannochloropsis gaditana)
TTTTCCATGTATCACACAGGCACCGTCCAAATCGTGGTCTGAAATGGCGG
CATTAGCGACGTGCTTCAGGTTTTATCAACTCTGCCTTGCTGACCAACGC
TGCAGTTCGTCACGCTGAAACTTCAACACGCAGGGGAAGGGTGTCGGCAG
AGGCTATTGAAACCTACGAGTTGACACTCACGTAGTCCAGACTGTTCATT
CGCGTCATGCCATGAAGCGAGAATCCTTCCATGCAGCGAACACTGGGGGT
GGTGGGTTGGGAGGTCCCATACCCGATGCGGTTTTCCAAACACAGTTTCA
ATGCTGTTCGGTAAGTTATTAAGCCGACTGCCGATTTCATAATAGCGTGG
TCCTGCGCAGGTCCCATGCCCCACTCGTGTCATGTGCCTCTACCTCTTTG
TGTGATCGTGTGTCAGTTGGGCTTAAACGCACGCTCTGTCATCCTCAATC
TTTGTTAATCAGGTGGAATTCAGTCCCTTTCAGGAAGCCCGCTTAGCTGT
GGCTACTGCTCAATATTTCGGCATAATCGGGAATGGCCGACAACACATCT
TAGAGGTATACTTTCTAACATATTATCATGCAGACGTGCAGGGTATTTTG
AGTTGGTGCGGGTCGATCATTTTATTGTCTCTTTTACTCGTCTTATTTCC
CCTTTGTTCCTGGAGTAGATAGGCCCAGACGGAAATTTAAGGGAAATTCG
TAGCTTTTTAACGCAGGAAGGCTTGTACGACTGCTGTTGGAGCGAGGCGA
ATCAAAATCAACTTgtctccgcctcggccgATGGAAGCTTGAAGCTGTGG
GACGTGATGACTTCGGATGGCTATCCAGTCGCTCACTGGTGAGGGCGACG
CAtcttctctcttccacccctgctctttccgtccctgcaccctttcctgc
ctcatTCCTTCATCATCTAAGTTGGTTTCCCATTTTTACTTTCATTGGAG
TCCACGGTACAGACTGACGactgtcctcttcctctcctctccccccccac
ctcgctcccttcctcccgcaggcAGGAACACTCGGCGGAAGTCTCCTCCG
TCCACTGGAACCAGGTCGTTAAAACCaacttcctctctgcctcctggGAC
GGCAGCATCAAACTCTGGGACCCGCACCACCCCACGTCTCTCTCCACCTA
TTGCGGACACACCGGGTGTGTCTATGCGGGAATCCACTCTCCCCGGCATC
CGCACCGTTTCCTGTCTTGTGGCACCGACGGGAGCCTGCGTATCTGGGAT
ACAAagctacctccctcccacgccaccTCCTTGGGCCTGGgtcgggcgga
gggaggggcggtgcAGGTCGTGCGAGCGcacgagggcgaggtcctGAGTG
CGGACTGGGACAAGTACCAGGACTTCCTCGTTTACACCGGGGGGGTGGAT
CGATCCATCAAAATATGGGATTTAAGGcgcccgtccctgcccctcggcTT
CTTGCACGGCCACGGGTACGCGGTGCGGAGGCTCAAGACCTCGCCCCACC
AGGAGGGAGTCCTGGGCTCCGTCTCCTACGACATGTCCTGCCGGGTGTGG
GGCccgacgagggcgggggggagggcgggggagctgTGGCGGTGCGAGGA
GCACACTGAGTTTGTGCAGGGTTTGGATTTTCATTTGTTTTGGCCGGGGA
GGATCGCCACTTGTGGGTGGGACCGACGGGTGTGTGTATggaccctcccc
cttccgtaggaagggcgaaagggacggcacgggggagggcaggaaggagg
agggcttaCATGGACAGTAGAGGGATTAGACCCCGGTCCATGTGTAAAAA
TGAGAAAGAAGCAACAAAAGCACCGCAGAGCGAGCGCCGCGACAT

Coding sequence (CDS) from alignment at CM002459.1:262809..264653+

>rna2387 ID=rna2387|Name=rna2387|organism=Nannochloropsis gaditana|type=CDS|length=4200bp|location=Sequence derived from alignment at CM002459.1:262809..264653+ (Nannochloropsis gaditana)
ATGAAGCGAGAATCCTTCCATGCAGCGAACACTGGGGGTGGTGGGTTGGG
AGGTCCCATACCCGATGCGGTTTTCCAAACACAGTTTCAATGCTGTTCGG
TGGAATTCAGTCCCTTTCAGGAAGCCCGCTTAGCTGTGGCTACTGCTCAA
TATTTCGGCATAATCGGGAATGGCCGACAACACATCTTAGAGATAGGCCC
AGACGGAAATTTAAGGGAAATTCGTAGCTTTTTAACGCAGGAAGGCTTGT
ACGACTGCTGTTGGAGCGAGGCGAATCAAAATCAACTTgtctccgcctcg
gccgATGGAAGCTTGAAGCTGTGGGACGTGATGACTTCGGATGGCTATCC
AGTCGCTCACTGgcAGGAACACTCGGCGGAAGTCTCCTCCGTCCACTGGA
ACCAGGTCGTTAAAACCaacttcctctctgcctcctggGACGGCAGCATC
AAACTCTGGGACCCGCACCACCCCACGTCTCTCTCCACCTATTGCGGACA
CACCGGGTGTGTCTATGCGGGAATCCACTCTCCCCGGCATCCGCACCGTT
TCCTGTCTTGTGGCACCGACGGGAGCCTGCGTATCTGGGATACAAagcta
cctccctcccacgccaccTCCTTGGGCCTGGgtcgggcggagggaggggc
ggtgcAGGTCGTGCGAGCGcacgagggcgaggtcctGAGTGCGGACTGGG
ACAAGTACCAGGACTTCCTCGTTTACACCGGGGGGGTGGATCGATCCATC
AAAATATGGGATTTAAGGcgcccgtccctgcccctcggcTTCTTGCACGG
CCACGGGTACGCGGTGCGGAGGCTCAAGACCTCGCCCCACCAGGAGGGAG
TCCTGGGCTCCGTCTCCTACGACATGTCCTGCCGGGTGTGGGGCccgacg
agggcgggggggagggcgggggagctgTGGCGGTGCGAGGAGCACACTGA
GTTTGTGCAGGGTTTGGATTTTCATTTGTTTTGGCCGGGGAGGATCGCCA
CTTGTGGGTGGGACCGACGGGTGTGTGTATggaccctcccccttccgtag
ATGAAGCGAGAATCCTTCCATGCAGCGAACACTGGGGGTGGTGGGTTGGG
AGGTCCCATACCCGATGCGGTTTTCCAAACACAGTTTCAATGCTGTTCGG
TGGAATTCAGTCCCTTTCAGGAAGCCCGCTTAGCTGTGGCTACTGCTCAA
TATTTCGGCATAATCGGGAATGGCCGACAACACATCTTAGAGATAGGCCC
AGACGGAAATTTAAGGGAAATTCGTAGCTTTTTAACGCAGGAAGGCTTGT
ACGACTGCTGTTGGAGCGAGGCGAATCAAAATCAACTTgtctccgcctcg
gccgATGGAAGCTTGAAGCTGTGGGACGTGATGACTTCGGATGGCTATCC
AGTCGCTCACTGgcAGGAACACTCGGCGGAAGTCTCCTCCGTCCACTGGA
ACCAGGTCGTTAAAACCaacttcctctctgcctcctggGACGGCAGCATC
AAACTCTGGGACCCGCACCACCCCACGTCTCTCTCCACCTATTGCGGACA
CACCGGGTGTGTCTATGCGGGAATCCACTCTCCCCGGCATCCGCACCGTT
TCCTGTCTTGTGGCACCGACGGGAGCCTGCGTATCTGGGATACAAagcta
cctccctcccacgccaccTCCTTGGGCCTGGgtcgggcggagggaggggc
ggtgcAGGTCGTGCGAGCGcacgagggcgaggtcctGAGTGCGGACTGGG
ACAAGTACCAGGACTTCCTCGTTTACACCGGGGGGGTGGATCGATCCATC
AAAATATGGGATTTAAGGcgcccgtccctgcccctcggcTTCTTGCACGG
CCACGGGTACGCGGTGCGGAGGCTCAAGACCTCGCCCCACCAGGAGGGAG
TCCTGGGCTCCGTCTCCTACGACATGTCCTGCCGGGTGTGGGGCccgacg
agggcgggggggagggcgggggagctgTGGCGGTGCGAGGAGCACACTGA
GTTTGTGCAGGGTTTGGATTTTCATTTGTTTTGGCCGGGGAGGATCGCCA
CTTGTGGGTGGGACCGACGGGTGTGTGTATggaccctcccccttccgtag
ATGAAGCGAGAATCCTTCCATGCAGCGAACACTGGGGGTGGTGGGTTGGG
AGGTCCCATACCCGATGCGGTTTTCCAAACACAGTTTCAATGCTGTTCGG
TGGAATTCAGTCCCTTTCAGGAAGCCCGCTTAGCTGTGGCTACTGCTCAA
TATTTCGGCATAATCGGGAATGGCCGACAACACATCTTAGAGATAGGCCC
AGACGGAAATTTAAGGGAAATTCGTAGCTTTTTAACGCAGGAAGGCTTGT
ACGACTGCTGTTGGAGCGAGGCGAATCAAAATCAACTTgtctccgcctcg
gccgATGGAAGCTTGAAGCTGTGGGACGTGATGACTTCGGATGGCTATCC
AGTCGCTCACTGgcAGGAACACTCGGCGGAAGTCTCCTCCGTCCACTGGA
ACCAGGTCGTTAAAACCaacttcctctctgcctcctggGACGGCAGCATC
AAACTCTGGGACCCGCACCACCCCACGTCTCTCTCCACCTATTGCGGACA
CACCGGGTGTGTCTATGCGGGAATCCACTCTCCCCGGCATCCGCACCGTT
TCCTGTCTTGTGGCACCGACGGGAGCCTGCGTATCTGGGATACAAagcta
cctccctcccacgccaccTCCTTGGGCCTGGgtcgggcggagggaggggc
ggtgcAGGTCGTGCGAGCGcacgagggcgaggtcctGAGTGCGGACTGGG
ACAAGTACCAGGACTTCCTCGTTTACACCGGGGGGGTGGATCGATCCATC
AAAATATGGGATTTAAGGcgcccgtccctgcccctcggcTTCTTGCACGG
CCACGGGTACGCGGTGCGGAGGCTCAAGACCTCGCCCCACCAGGAGGGAG
TCCTGGGCTCCGTCTCCTACGACATGTCCTGCCGGGTGTGGGGCccgacg
agggcgggggggagggcgggggagctgTGGCGGTGCGAGGAGCACACTGA
GTTTGTGCAGGGTTTGGATTTTCATTTGTTTTGGCCGGGGAGGATCGCCA
CTTGTGGGTGGGACCGACGGGTGTGTGTATggaccctcccccttccgtag
ATGAAGCGAGAATCCTTCCATGCAGCGAACACTGGGGGTGGTGGGTTGGG
AGGTCCCATACCCGATGCGGTTTTCCAAACACAGTTTCAATGCTGTTCGG
TGGAATTCAGTCCCTTTCAGGAAGCCCGCTTAGCTGTGGCTACTGCTCAA
TATTTCGGCATAATCGGGAATGGCCGACAACACATCTTAGAGATAGGCCC
AGACGGAAATTTAAGGGAAATTCGTAGCTTTTTAACGCAGGAAGGCTTGT
ACGACTGCTGTTGGAGCGAGGCGAATCAAAATCAACTTgtctccgcctcg
gccgATGGAAGCTTGAAGCTGTGGGACGTGATGACTTCGGATGGCTATCC
AGTCGCTCACTGgcAGGAACACTCGGCGGAAGTCTCCTCCGTCCACTGGA
ACCAGGTCGTTAAAACCaacttcctctctgcctcctggGACGGCAGCATC
AAACTCTGGGACCCGCACCACCCCACGTCTCTCTCCACCTATTGCGGACA
CACCGGGTGTGTCTATGCGGGAATCCACTCTCCCCGGCATCCGCACCGTT
TCCTGTCTTGTGGCACCGACGGGAGCCTGCGTATCTGGGATACAAagcta
cctccctcccacgccaccTCCTTGGGCCTGGgtcgggcggagggaggggc
ggtgcAGGTCGTGCGAGCGcacgagggcgaggtcctGAGTGCGGACTGGG
ACAAGTACCAGGACTTCCTCGTTTACACCGGGGGGGTGGATCGATCCATC
AAAATATGGGATTTAAGGcgcccgtccctgcccctcggcTTCTTGCACGG
CCACGGGTACGCGGTGCGGAGGCTCAAGACCTCGCCCCACCAGGAGGGAG
TCCTGGGCTCCGTCTCCTACGACATGTCCTGCCGGGTGTGGGGCccgacg
agggcgggggggagggcgggggagctgTGGCGGTGCGAGGAGCACACTGA
GTTTGTGCAGGGTTTGGATTTTCATTTGTTTTGGCCGGGGAGGATCGCCA
CTTGTGGGTGGGACCGACGGGTGTGTGTATggaccctcccccttccgtag

Synonyms

Publications