|
|
Properties
| Property Name | Value |
|---|
| Product | beta-ketoacyl synthase |
| Orig transcript id | gnl|cribi|Naga_100004g8.9085.mrna |
| Orig protein id | gnl|cribi|Naga_100004g8.9085 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:242068..243826 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2378 ID=rna2378|Name=rna2378|organism=Nannochloropsis gaditana|type=mRNA|length=2578bp
TTAGGGGTATCTCCGCCCCCGGTGGACGACTTACTAGTGCAAGCTCTGGC
GGAAGTAGGGGGAATGGGCATGGGGGGAAGCGCCGGGGAAGTATTCGGGC
GCCAAGGGCTCACGGAGGTCGAGGAGGAGGAGGACATGGCCCTGCTGTTC
GCCGAGTTCGACGAGCACGAGGAGGACGGGCACAGGCGTCACCTTCTGGA
GGAGACGTCCTCACCTCGTGGCTGGAGGGATGGCAGCGAGGATCTTGGGG
GAAAGAACGACGATGGGGAGATGGCCGAGGATGCTGGGCGAGCAGCTGGA
GAGAGACTGGGTGGAAAAGGAGATCCGGTATACGAGTTGATGGAGGCGTC
GCCGGCGATGCGTCCCAAAGTGACCAGCCCCAGCATGGAAAGGGACGAGG
ATAGGATGGATGTGGTCGGCGACGAGCGACAGGCACTGGTGGGTGCAGAT
GGAGGAGTTTCACAGGATTATTAGGAAGATAAGCGGTCTGGATGAGGCGC
CTTGACCGCCGAGATGAACAGCTGATGTCTAATCAGAGGACCATGAGGAC
AATGCAATGTGGTAGTTATACGCAAAACATAAAAGTATCAGCCGATTTCC
CGGCACGGACACTTCAGCTAGGTTTTCCGTCGATATAATCATTTCCATCA
AATCAAGCATTCATGACGATAAACATCGGCGCTTCCCTTTTGCTTCTTTT
CATACACGTGGGCTCATACTTTGTGGGAGCTGCAGCAAGGTGAAGAAAAT
CCCTGTACTGACGTGCTCACAGATAAAGCAAGTCACAGGCAACCTAACAT
ATCTCATATATTTGAGGTGCACGGAGTATATTTCGGTTCAAATCTCTCGT
CTGTCCTTACAACAAGGCGTCAGCCCTGTCCCCCCCCCCCAGTAAGTGAG
GCATCATCCGCTTCCCGTGCAAGCGAGTATAGAATTATTTCCAGACGTCC
TGAGCACGCATTTGCCAACGCTTTTACTTCTCTTTGACCTATCCCTTGAT
GGTCTTTTGGATCGACTATATTCCGACTTGCATATTTGACATAGCATGGG
TATTCTTTGTGTCAACCTCCCGAATGAAAAGAATTCGAGGCCAGTGGAAA
AAATGTGTGTCCATTGTTGTCCATCATCAAGAGCATGTGGTGTGATCCTT
TAGTTCGCAGTAAACGATTTGTTCATGCACTCTCAGAAAGGCGGGCTCCG
CATTAACCTCCTCCCTCAGGAAATATGCTAGAAAATAAACGTTCCTCACG
AGAAGACTCCCTCTCAATATCAGATTTTTTGCCCGAAGTTGCGCAATGCT
TTAAAAGGAGCCCTCACGTTATTTCGGAAAGCTTGCTTTTTCGGAGGATG
GACTGACTAAAATCACACCGCCTTACATACAGGTATTCTCACTGCGTCGT
GACTCTTCGAAAGAATGGTTAACATCTTTCGATTTGTCATCCTTTTTATC
CTGCAGCTTCCGGCATTTGTACAAGGTTTTGTCATTCCAAGGTCCTGGGT
ACCCTCTTGCAAGGCTCGAGAGTCTACTGTTCTCATGACAGCGACGACAC
AACACGTTGTCGTTGGGAAAGGGCGAGTTGGGGAGGCTCTTGGAAAAATG
CTGGGGTCCAGCACTGTTATGGTTGGGCGCAATGACCCTGTTCCTATCGA
AGGGACAGGTCCGATTTATGTGGCTACGCGTAACGATGACCTCGCGGCCG
TTGTTGAGAAAACCCCTGAGGCCCGTCGGAAAGACTTGGTTTTTCTACAG
AACGGGATGCTAGGTCCTTTTTTGAAAACGTATGGCCTCGAGGACAACAC
TCAAGCGCTCGTGTATTTTGCTGTAGCCAGGAAAGGGGACGTGCCTACTG
ATGGTGTGACCGATTTGAACCCGAACGGTTTGACCGCTGTGTACGGGGAA
TGGGCAACAGACTTTGAGGAGACGCTTACGAAGGCGGGGTTGAAATGCCA
CATATTGGATAAGGGGCGCTTTCAAGCCGCCATGTTTGAAAAGCTCATGT
GGATCTCGGCATTCATGCTGGTAGGGAGTGTGCACGGAGGGATCACAGTG
GGCGAGGTGGAGAAGTCGCACCGGGAAGACGTGGTGGCACTGATCCAAGA
GCTGAAAAAAGCCTTGGAACGACACGCGAAGGTGACGTTTCAAGACGGGG
TGGAAGACCGATTGTGTGCCTATGCGCGGTCCGTTGCCCATTTCCCGACG
GCGGTGAAGGAATTCCCATGGCGCAATGGTTTCTTTTGGAAGCTATCCGA
GGAAGCTGTTGGACGCGGAGAGGCTGATCCCTGTCCATCCCACTCGGCGA
TGCTTAAGCAGGTTGGAGCCCTTTAACAGTACGTACAACCGGAAAAGCAT
GAACAATAACATGTACAATCGGCGGAAAAGCAAGGACACATTGACCCCGC
CGAAGCCAAAGGAATTAGAGAGGGCGTACTCCATGTCGGGCCGCAGAAGA
TGGGGGCTCTGTGGGCTCTGTCCGACGATTTGGAAGTCCCAGGCTTTGGC
GACGCTGTCAGGCCTGCATGGTCAAGGGGGGAGCAGCCAAGCAATGGTGT
AAAAAAAAACGGCACCCTGGCGTCTTGA back to topprotein sequence of rna2378 >rna2378-protein ID=rna2378-protein|Name=rna2378|organism=Nannochloropsis gaditana|type=polypeptide|length=396bp
MSLVRRRVVVSGIGIISPLGIGRKATWDALLAGRIGVRALDAEKDKIPEL
PALPARIAATVDQAQVRPPPGEEGNWPRLSPFIRYALLAAEEALHHAQWH
PRTSHDKERTGVYIGTGIGCLEEIVEAQRVMASGGGIRRVSPHFVPKILG
NLATGNVSIRHGLQGPNHASITACASGAHAIGDAFRLVQYGDADVMVAGG
TEACINALCLGGFSRLRALSTRYNDEPERASRPFDADRDGFVVGEGAAVL
VLEEREHALARGVKPLAEIVGYGMAGDAHHITAPSPDGGGAFRAMRAALG
SAKEVGGVRLWEVGHVNAHATSTPVGDVIEGQALQRLWEEHCRQDKRGAG
RNARMDVSATKGATGHLLGAAGALESAFTVLALRDGVVPGTANLER back to topmRNA from alignment at CM002459.1:242068..243826- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2378 ID=rna2378|Name=rna2378|organism=Nannochloropsis gaditana|type=mRNA|length=1759bp|location=Sequence derived from alignment at CM002459.1:242068..243826- (Nannochloropsis gaditana)
TGATATGTCACTTGTGCGACGGCGAGTGGTGGTATCAGGTATAGGGATTA
TAAGCCCGCTGGGGATAGGTAGGAAGGCAACATGGGATGCCCTGCTAGCC
GGTCGAATCGGGGTCCGTGCATTGGACGCAGAGAAGGACAAAATACCTGA
ATTGCCTGCATTACCAGCTCGGGTGAGTGTCGAGTGAAAGAATGGGTGGT
CTGCGACCAGAGTTTTTATTTTCTAGGAGCGGACGCAAACGCTCTGAACT
CGGGGAGGGGCTTTTTACTATCCCCGACACGTTTCGTGACACCTCTTTAT
TCACACATATGTCGTGGGGCACATCTCTTCAGATTGCTGCCACGGTCGAT
CAAGCACAGGTCAGGCCTCCTCCCGGAGAGGAGGGCAATTGGCCTCGCCT
CTCCCCTTTCATCCGGTACGCCCTCCTAGCCGCCGAGGAGGCTTTACATC
ACGCGCAGTGGCATCCGCGCACTTCGCATGACAAGGAACGCACTGGAGTA
TATATTGGCACGGGAATCGGATGTCTGGAAGAGATTGTGGAGGCGCAGCG
TGTCATGGCATCAGGAGGGGGGATCCGCCGTGTGAGTCCTCATTTCGTCC
CTAAAATTCTGGGTAATCTGGCCACGGGAAATGTCAGCATTCGGCATGGC
TTGCAGGGGCCGAATCATGCATCCATCACTGCCTGCGCCAGTGGAGCCCA
CGCGATCGGGGATGCCTTCCGGCTCGTCCAATACGGGGACGCGGATGTGA
TGGTGGCGGGGGGGACGGAAGCCTGTATCAACGCCCTCTGTCTGGGAGGG
TTCTCAAGACTCCGTGCATTGAGCACCCGGTACAACGACGAGCCAGAGCG
GGCATCACGGCCTTTCGACGCCGACAGGGACGGATTTGTGGTGGGAGAAG
GGGCGGCCGTGCTCGTTTTGGAAGAGAGGGAGCATGCTCTGGCCAGGGGT
GTGAAGCCGTTGGCGGAAATCGTCGGTTATGGAATGGCAGGGGACGCACA
CCACATCACGGCACCTTCCCCGGACGGCGGGGGCGCCTTTCGCGCAATGC
GAGCTGCGTTGGGCAGCGCCAAGGAGGTGGGCGGGGTGCGATTGTGGGAG
GTCGGTCATGTGAACGCGCACGCGACCTCGACGCCCGTGGGGGATGTGAT
CGAGGGGCAGGCCTTGCAACGTCTCTGGGAGGAGCACTGCAGGCAAGATA
AGAGGGGCGCGGGGAGGAATGCCAGGATGGACGTGTCGGCGACAAAGGGG
GCGACGGGGCACTTGCTAGGCGCTGCGGGGGCGTTGGAGTCGGCCTTCAC
GGTGCTGGCTTTGCGGGACGGCGTGGTTCCAGGGACCGCGAATTTAGAAA
GGTAAGAGGGGGAGGATAGAGGTCAGAGAGTCTTTTTTAAGGATCGGGAC
GGGAGAAAAGCGGAAAACTGAGAGAGGTACTTCGTCAAGACATTCGAGAG
AGATGTATCAAGACGCCAGGGTGCCGTTTTTTTTTACACCATTGCTTGGC
TGCTCCCCCCTTGACCATGCAGGCCTGACAGCGTCGCCAAAGCCTGGGAC
TTCCAAATCGTCGGACAGAGCCCACAGAGCCCCCATCTTCTGCGGCCCGA
CATGGAGTACGCCCTCTCTAATTCCTTTGGCTTCGGCGGGGTCAATGTGT
CCTTGCTTTTCCGCCGCTGTACATAGGAGGAGCCCGTGTTTTAAAATTTA
CCCGTCATTGACGAGAACACGTGGCACAATAAAAAGCAAATTAAACTTAC
ATTGTACAT back to topCoding sequence (CDS) from alignment at CM002459.1:242068..243826- >rna2378 ID=rna2378|Name=rna2378|organism=Nannochloropsis gaditana|type=CDS|length=2382bp|location=Sequence derived from alignment at CM002459.1:242068..243826- (Nannochloropsis gaditana)
ATTGCTGCCACGGTCGATCAAGCACAGGTCAGGCCTCCTCCCGGAGAGGA
GGGCAATTGGCCTCGCCTCTCCCCTTTCATCCGGTACGCCCTCCTAGCCG
CCGAGGAGGCTTTACATCACGCGCAGTGGCATCCGCGCACTTCGCATGAC
AAGGAACGCACTGGAGTATATATTGGCACGGGAATCGGATGTCTGGAAGA
GATTGTGGAGGCGCAGCGTGTCATGGCATCAGGAGGGGGGATCCGCCGTG
TGAGTCCTCATTTCGTCCCTAAAATTCTGGGTAATCTGGCCACGGGAAAT
GTCAGCATTCGGCATGGCTTGCAGGGGCCGAATCATGCATCCATCACTGC
CTGCGCCAGTGGAGCCCACGCGATCGGGGATGCCTTCCGGCTCGTCCAAT
ACGGGGACGCGGATGTGATGGTGGCGGGGGGGACGGAAGCCTGTATCAAC
GCCCTCTGTCTGGGAGGGTTCTCAAGACTCCGTGCATTGAGCACCCGGTA
CAACGACGAGCCAGAGCGGGCATCACGGCCTTTCGACGCCGACAGGGACG
GATTTGTGGTGGGAGAAGGGGCGGCCGTGCTCGTTTTGGAAGAGAGGGAG
CATGCTCTGGCCAGGGGTGTGAAGCCGTTGGCGGAAATCGTCGGTTATGG
AATGGCAGGGGACGCACACCACATCACGGCACCTTCCCCGGACGGCGGGG
GCGCCTTTCGCGCAATGCGAGCTGCGTTGGGCAGCGCCAAGGAGGTGGGC
GGGGTGCGATTGTGGGAGGTCGGTCATGTGAACGCGCACGCGACCTCGAC
GCCCGTGGGGGATGTGATCGAGGGGCAGGCCTTGCAACGTCTCTGGGAGG
AGCACTGCAGGCAAGATAAGAGGGGCGCGGGGAGGAATGCCAGGATGGAC
GTGTCGGCGACAAAGGGGGCGACGGGGCACTTGCTAGGCGCTGCGGGGGC
GTTGGAGTCGGCCTTCACGGTGCTGGCTTTGCGGGACGGCGTGGTTCCAG
GGACCGCGAATTTAGAAAGGTAAATGTCACTTGTGCGACGGCGAGTGGTG
GTATCAGGTATAGGGATTATAAGCCCGCTGGGGATAGGTAGGAAGGCAAC
ATGGGATGCCCTGCTAGCCGGTCGAATCGGGGTCCGTGCATTGGACGCAG
AGAAGGACAAAATACCTGAATTGCCTGCATTACCAGCTCGGATTGCTGCC
ACGGTCGATCAAGCACAGGTCAGGCCTCCTCCCGGAGAGGAGGGCAATTG
GCCTCGCCTCTCCCCTTTCATCCGGTACGCCCTCCTAGCCGCCGAGGAGG
CTTTACATCACGCGCAGTGGCATCCGCGCACTTCGCATGACAAGGAACGC
ACTGGAGTATATATTGGCACGGGAATCGGATGTCTGGAAGAGATTGTGGA
GGCGCAGCGTGTCATGGCATCAGGAGGGGGGATCCGCCGTGTGAGTCCTC
ATTTCGTCCCTAAAATTCTGGGTAATCTGGCCACGGGAAATGTCAGCATT
CGGCATGGCTTGCAGGGGCCGAATCATGCATCCATCACTGCCTGCGCCAG
TGGAGCCCACGCGATCGGGGATGCCTTCCGGCTCGTCCAATACGGGGACG
CGGATGTGATGGTGGCGGGGGGGACGGAAGCCTGTATCAACGCCCTCTGT
CTGGGAGGGTTCTCAAGACTCCGTGCATTGAGCACCCGGTACAACGACGA
GCCAGAGCGGGCATCACGGCCTTTCGACGCCGACAGGGACGGATTTGTGG
TGGGAGAAGGGGCGGCCGTGCTCGTTTTGGAAGAGAGGGAGCATGCTCTG
GCCAGGGGTGTGAAGCCGTTGGCGGAAATCGTCGGTTATGGAATGGCAGG
GGACGCACACCACATCACGGCACCTTCCCCGGACGGCGGGGGCGCCTTTC
GCGCAATGCGAGCTGCGTTGGGCAGCGCCAAGGAGGTGGGCGGGGTGCGA
TTGTGGGAGGTCGGTCATGTGAACGCGCACGCGACCTCGACGCCCGTGGG
GGATGTGATCGAGGGGCAGGCCTTGCAACGTCTCTGGGAGGAGCACTGCA
GGCAAGATAAGAGGGGCGCGGGGAGGAATGCCAGGATGGACGTGTCGGCG
ACAAAGGGGGCGACGGGGCACTTGCTAGGCGCTGCGGGGGCGTTGGAGTC
GGCCTTCACGGTGCTGGCTTTGCGGGACGGCGTGGTTCCAGGGACCGCGA
ATTTAGAAAGGTAAATGTCACTTGTGCGACGGCGAGTGGTGGTATCAGGT
ATAGGGATTATAAGCCCGCTGGGGATAGGTAGGAAGGCAACATGGGATGC
CCTGCTAGCCGGTCGAATCGGGGTCCGTGCATTGGACGCAGAGAAGGACA
AAATACCTGAATTGCCTGCATTACCAGCTCGG back to top
|