rna2372, rna2372 (mRNA) Nannochloropsis gaditana

Overview
Namerna2372
Unique Namerna2372
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1263
Alignment locationCM002459.1:221294..222722 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g2.9179.mrna
Orig protein idgnl|cribi|Naga_100004g2.9179
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:221294..222722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g2gene2267Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2372rna2372-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28248.1cds2364Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2372 ID=rna2372|Name=rna2372|organism=Nannochloropsis gaditana|type=mRNA|length=1263bp
ATGGCACATGACAACGAACCCGCCCTCCCTAATGCAGCCCTTGCTCCTGA
GGACTCTCATACCACGGACAGTGGCACCTACGGCAATGGCAGCTGTGGTA
AAATTGATATAAAAAGAAACGGCGTTCATGGACGGGAAGATAAAACAATG
TGCCCGCAAGATCACACGGGATGGACGACCTTGGGATTGGTCAACCTCGG
GAACACTTGCTTCCTCAACACCGTTTTACAAGCCTTAGCTTCCCTCCCTC
CCTTCAAAGAGGCACTGGAGCAGGCCCTTACTTTCCGTCCAGGCAGTGAC
GCGCCTGTCAGCCGCCTAGTGCTTCGCTACCTCCACTCCCTTCAACCCAC
CTGCATCAAGAATGACGCGGCTGCTACCTTTGGCGCCCCCTTTCCGCCTC
ACTCTGAGGCCCAGAGTCCCTCCGACCTCCTTTACCTCCTGCGTGGATGC
TGCGCCTCTTTTTTCCGACGGAACGAACAGCAGGATGCGGAGGAATTCCT
ACAGGTCCCCTCCTCCTTCTCCTCCTCCTCACCCTCCTCCTCCTCACACT
CCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCATCCTCCTCCTCCTCC
TCCTCCTCTTTCGCCGCCGCCGCCGCCTCCTCCTCCTCCTCCTTCGCCCC
CTCCTTCTCTTCCTCCTCCATCGCCGCCTCCTCGACCTTCACCTTCCGTA
ACCCTTTTGCCGGATGGCTCGCGAGCGTCGTGAAATGCGCTGTGTGCGGC
CACTGCCGCCCGATTCAGAACTCCTCCTTCCTCGATGTTCCCCTCTCCCT
CCACCCGCCCGCTACCTCCCCCTCGTCGCCCTCCTCCCCTTCCCCTCCCT
TCCTCTCCCCCGTCGTTTCGTCCCTTCGACCTCTGAACGGCCTCCTCACC
GGCCGATCCCTCCCTGCACCTCCCTTCCGCCTTCCCTCCGCATCACACCC
GCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCACA
TCCTCGAACTCCTTGACTCCTTCGCCCAGGAAGAGACCGTCCGAGGTCTT
CCCTGCCACAGCTGCCGCTGCCGCCACGTCCTCCGGGACCTGACCGCCAA
GATTCAGCGCCTGGAGACAGGCATTCGGCACGTGGAAGAAGCGGGGGGCG
AGCAGGTTGAAGGCACCTTAACTTTTCTCCGAAAAGAAATGAAGGAGGTG
CGGGCGGTGAAGGAGAATCTGCTTCGCCTCGACGGTTCGCGGCCTACGGC
GGGGGCGCATTGA
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protein sequence of rna2372

>rna2372-protein ID=rna2372-protein|Name=rna2372|organism=Nannochloropsis gaditana|type=polypeptide|length=218bp
MEPHTQMRAPAHAAKRFGWDWWAWNMLLAATPATMLWYGLSCTREGIKHE
VGQLKAAMAEQRGDMQYNTPTDFPMDNRGLRDKKSEEVTPTPGQAGREDM
SAAGARPEERIARLEVRLAALERLSESQCERRQSLEKNMKGSDASEGGGS
EEPFLSGVRRRMLSQLEEGTMEAFLKMKGGPDALEESIPRHGKRSLPVDV
AKKREPSRHVKEGEGEAG
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mRNA from alignment at CM002459.1:221294..222722+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2372 ID=rna2372|Name=rna2372|organism=Nannochloropsis gaditana|type=mRNA|length=1429bp|location=Sequence derived from alignment at CM002459.1:221294..222722+ (Nannochloropsis gaditana)
TCATACACTTGTAAGGTTTTTTATTGGAAACCAGCTGGTCACTTCTCTAA
TGGCACGGTAGAAGCATCTTGGAGTCCGACAACGCGGCTAGCAGCGTCAC
TGGACAGCCTGCCCGGCGTCTCTGTGCAAGAAGTGAACAAAAGTTGAAAC
ACAGCCTGTCAAGGCGAAACGTAGCGATAACTGAGCATGCTGGTAAAAGG
GCCGACTGTTTTTTCCAGTGTTCTGCCATATAAGCTGTCTATAGGCAGTA
GCGGAGTGTCGCTACGCGTTACCTCCCCGACCCCTGCCGATTGCGCCCGG
GAAAGGCCTTGAGTTGTGTCAAGGAACAAGGCTTATGAAGCCCTTCAGAC
ATATACACGCTCCTTCTTGTGACATCGTCTACGGTGTGGTACCTGCTAGC
ATGTTGGCATGATTTCGATGACAGATTTGACGCGTGTGTCCGTGCcacct
cgctcttcctcctgaaTTCCGGTGTCCTACTTTtatctcccccctcccct
ttttttgAATGGAACCACATACTCAGATGCGCGCTCCCGCTCATGCCGCT
AAGCGCTTTGGTTGGGACTGGTGGGCGTGGAATATGTTGCTCGCCGCAAC
TCCCGCTACGATGTTGTGGTACGGGCTGTCGTGTACCCGCGAGGGGATAA
AGCACGAGGTGGGCCAGTTGAAAGCTGCCATGGCCGAACAACGGGGCGAC
ATGCAGTATAACACTCCTACAGATTTTCCGATGGATAATAGAGGACTCCG
AGACaagaaaagcgaggaagTAACGCCTACCCCCGgtcaggcagggaggg
aggacatgagcGCGGCGGGCGCGCGTCCAGAGGAGAGAATAGCGCGGCTA
GAAGTCAGACTGGCAGCATTGGAGCGACTCTCGGAGAGTCAATGTGAGAG
AAGGCAAAGTTTGGAGAAAAATATGAAGGGCAGCGATGCGAGTGAGGGCG
GTGGTTCGGAGGAACCTTTTTTGTCCGGTGTGAGACGGCGCATGTTGAGT
CAGCTCGAGGAAGGGACTATGGAGGCATTCTTGAAGATGAAGGGGGGACC
GGATGCTTTGGAGGAAAGCATTCCACGCCATGGGAAGAGGTCACTGCCAG
TCGATGtcgcgaaaaagagggagccGTCGAGGCATgtaaaggaaggggaa
ggtgaggcgGGATGAGGGTAGACACCCACAGGGAAAGTCGCGCAAAATAT
TCCGAGCAAGTAAAACAATGTGTACAGAAATTGAACAGAAGGGATAAACC
AGTCACGTGTCGAACACATCAAAGTGCCGTGTTTAATCAGAACCTATctt
gacctccccctcctgagCAACGATCCCCCTAGTCTTCTCACACTCGTTTC
TCACAAGAATGCCCTGGAGGCAAACGTATTTGCACACCACTGCCCGCAGC
CCCGCGTCATTATAAAGATTTTTGAACCA
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Coding sequence (CDS) from alignment at CM002459.1:221294..222722+

>rna2372 ID=rna2372|Name=rna2372|organism=Nannochloropsis gaditana|type=CDS|length=657bp|location=Sequence derived from alignment at CM002459.1:221294..222722+ (Nannochloropsis gaditana)
ATGGAACCACATACTCAGATGCGCGCTCCCGCTCATGCCGCTAAGCGCTT
TGGTTGGGACTGGTGGGCGTGGAATATGTTGCTCGCCGCAACTCCCGCTA
CGATGTTGTGGTACGGGCTGTCGTGTACCCGCGAGGGGATAAAGCACGAG
GTGGGCCAGTTGAAAGCTGCCATGGCCGAACAACGGGGCGACATGCAGTA
TAACACTCCTACAGATTTTCCGATGGATAATAGAGGACTCCGAGACaaga
aaagcgaggaagTAACGCCTACCCCCGgtcaggcagggagggaggacatg
agcGCGGCGGGCGCGCGTCCAGAGGAGAGAATAGCGCGGCTAGAAGTCAG
ACTGGCAGCATTGGAGCGACTCTCGGAGAGTCAATGTGAGAGAAGGCAAA
GTTTGGAGAAAAATATGAAGGGCAGCGATGCGAGTGAGGGCGGTGGTTCG
GAGGAACCTTTTTTGTCCGGTGTGAGACGGCGCATGTTGAGTCAGCTCGA
GGAAGGGACTATGGAGGCATTCTTGAAGATGAAGGGGGGACCGGATGCTT
TGGAGGAAAGCATTCCACGCCATGGGAAGAGGTCACTGCCAGTCGATGtc
gcgaaaaagagggagccGTCGAGGCATgtaaaggaaggggaaggtgaggc
gGGATGA
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Synonyms
Publications