rna2363, rna2363 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2363
Unique Name	rna2363
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2644
Alignment location	CM002459.1:202567..204104 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100348g6.2072.mrna
Orig protein id	gnl\|cribi\|Naga_100348g6.2072
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:202567..204104 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100348g6	gene2258	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28313.1	cds2355	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2363	rna2363-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:202567..204104-
coding sequence from alignment at CM002459.1:202567..204104-

mRNA sequence

>rna2363 ID=rna2363|Name=rna2363|organism=Nannochloropsis gaditana|type=mRNA|length=2644bp
TCATTCACGACGAGTCAAGTGATAAACATAAAACGTCGAAGAATCACGAG
GGATATGCACAGCTGTAGGCCTGTCGAATTGTGTCTATGCTGAACAAATC
AGTACCATGACGGATTTCTCGCTTCTCATTACAGCTGACACACATTCAGG
CACACTCTTACCTTTTAAGACGCTGTCCCTCAGGTATTGTAAAGTACATT
TTGGCCTCTGTACCACTGTGCACAACAATTTTTGAACCAGAGCGCACGAA
AGACGAGAAAGAAATTGTGTGGTGACCAGAAAAAGTCCTAGGAGGGACTT
GGCATTCCTTTCCATCGTCCGCAAGTCCCGGGATTGGGAACCTATTATCT
GCTCCCCTTCGGCCTTCGTCCCCACGCGACGCGCACCATGGTTGCTGACG
AGCCCGTCGGCCAAAGCCTGCTCCGCCGTCGACGTAAAGAAAGCCCCCCC
AGCATGCCCGTGGCTACCTTGGACAGTGTAGGGCCTGGCCGTGTCCTATC
TCCCGCGGCTGCTGCCGCCGACCCAGCCGAGAAGGCCGCATCCAAGGAGA
GCGACCGGCACGCCCTGCGGCGGCTATGGCGAGAGACGATCCCGGAGGAG
AAAGGGTACATGGGAGCAGGCGTCACGGCCATGCTGGTCTCCTCCGCGAC
GAACATGGCCTTCCCCACCCTGATCGGGCGCATTGTGGACCGTACGACCA
AGGGCGCCGGTAGCGGTGACGGGGGAGGGGCGGGAGAGAAAGAGACGTCG
TCGGAAGGGGAAGTGGCCTCTTTGCAGGTGTTTTTGGGCCGAGCACTCCT
GATCTTCGTGGCAGGAGCGATCGGTTCCTGCGTCCGGACGCATTGCCTCC
GGATGGCCAAGGAAGGCACAGCGCGCCGGTTGCGAAAGAAGTTGTTTCGG
TCCCTCCTCCGTCAGGATAAAGCCTTTTTCGACGATCCCGAGACGGGCGG
GCATCGAACCGGGGAGCTGGTGGCGGTGCTTGAGGGAGACGTGGACGCCT
CCTCCGAGGTGTTCACCACGCGCCTGGCCGACGGGTTGCGCTCCACCTCT
TCGGCCGTGAACGGCACGCTCATGCTCTTCCGCCTCTCCCCCAAACTCAC
GGGCGTCTCCCTCGGGCTGATCCCGGTATTCACCGCCGCCATCGTCACCA
ATGTGGTCTTGACCCGTTCTTTGACCGCCCGCCAACGTGCCTTGGCGGCG
GGGGCGACGGGCTTCGCCCAGGAACGTCTGGGGAATTTGGTGACCGTTCA
CGCCTTCACGGCCGAGGATCGGGACGAAGCCGCCTACGCGCGTCTCTTGG
ACGAGGCCCACGCCCTCACCTCCCAGGTATCTCTGGCGAAGGGTCTCTTC
ATGGGCAGCCTCTTCTTCGGCGGCTCCGTGACCATGTCTGCCGTCCTCTG
TTTTGGCGGGACCCTGGCCGGCCAAGGGGAACTGAGCGTCGGGGATCTGA
CCTCGTTCTCCATGTACACAGGGCTGGTTGCCTTGGGCTTCTCGGGGCTT
TCCAGCTATGTGTCCGACACGTGGAAGGCGGCCGTGGCGGCGCGTCGGGT
CTTTGACCTCGTGGACCGCCCCCCTCCCTCCCTTCCTCCCTCCCGCCCTC
CGCCACGCCCTCCCCCACCGCCTCCCTCCCTTCCCTTCCTTATCCGGCCA
AGACGGCCCGAGGCCACCTGCGCTTCGAGAAGGTTCGATTCGCCTACCCG
AACCGGCCCTCGGTCTTTGTCTTGCAGGGCGTGGACTGCGAGATCTTCCC
GGGGCAGGTGGCGGCCATCGTTGGGGCCTCAGGGTCGGGGAAGTCTACCC
TCCTGGCCCTCCTCCTCCAGCTCTACCGGCTCAAGGGAGGGGGGGAGGGA
GGGGGAAGGATATGGGTGGATGGGGAGGAGGTAGGGGCAGTGGATCCGGC
GTGGGTCAGAGGACAAGTGGGACTGGTCGAGCAGGAACCGGCACTTTTCA
CTGGTACCATCGCCGAGAACATCCGTTACGGGCGACCCAGCGCCACCGAT
GCCGAAGTCGAACAAGCAGCCAAGGACGCCAACGCCCACGATTTCATTAC
AGCCTTCCCCGACGGCTACCAGACCTATGTAGGAGAGCGAGGGAAAGCGC
AGTTGAGCGGAGGCGAGCGGCAACGGATCACCTTGGCGAGGGCATTGGTG
AAACGTCCGCCCATCTTGGTCCTGGATGAGGCTACCAGCTCGCTGGATCC
AGAAAGCGAACGACTCGTGCAAGAAGCCTTGGAGAAAGCCATGCGGGGAA
GGACGACGGTGGTGGTGGCGCATAGACTCAGCACGGTGGAGAAGGCCGAC
GTCATCTTTGTGCTTGAAAAGGGCCACATTGCAGAGAAGGGGAATTTCCG
GGAGCTCTTGAACCGAAAAGACGGCGCCTTTGCGCGCCTGCATCAATCCG
CTTCTTTTTTGTCGTCGGACAACCCGACAGGATAGGGAGGAAGGGAGGGG
GGGGAGGTGGGACGGGATGGGAGGAAAACTTGGTAGGCGGGCGGTGTGAT
AGAAGAAACGCATGCCGGTGCTCGGCTAGGTAGCTCGTGTGATTAAATTG
ATGCCAAGGGCCCCAAGGAATGCGTCCCTGACGAAGCCACTCGGGCGAAA
AGAATAAAGGAGGACGCGTGCTCGCCCGCTCCAGCCGGTTTCAG

protein sequence of rna2363

>rna2363-protein ID=rna2363-protein|Name=rna2363|organism=Nannochloropsis gaditana|type=polypeptide|length=407bp
MAEAEETRLEAVLGLSVEGDEGENSQDKHHTREVEDALIFGVGASPVSDV
CGSHSLLSEAALKHVVPSPPSSNYLLRDGDNTFLSVAPADPHVLPSARSL
PTLSSTSSLVVSPSPVDPYPLPGAPEDYAGLFPGPTDPHHPPDIQISPPL
VFHPPATRSGEGGHGVGRGGWRGGGQGRATACMDTVPGGGMGWTGLVKPT
GEGTMVGDVEGRKPTAGRVPASWEKSRGARKGEEEGGPVGGTGSVEAAEG
TAGEITAPCVQPKKHAPLGQWVTPPQPQYSIFKNPLRDVDAAGRSGRTGA
RTGQGLGRGGSGVGEREGGRSAKAGGGDEADGGEKSDDGEGGGEGSGGGG
GGGGAGKGKSEGQGKNLGGRMRTFRALLPKTPRMGWGMGRRKGETEMPPP
SRPPSRP

mRNA from alignment at CM002459.1:202567..204104-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2363 ID=rna2363|Name=rna2363|organism=Nannochloropsis gaditana|type=mRNA|length=1538bp|location=Sequence derived from alignment at CM002459.1:202567..204104- (Nannochloropsis gaditana)
ATGTACAGCCGGCACGTTAGGCGGAAAAATTGACGTGCACCCTCACCAAC
AGTTTTGAATGATGACTCAAACCCTCTCTTAAATGCCATGCTGCCTCCTA
CGGAAATCGTGCTTATGCTTGGCTTTCTTGTGCTTCCAAGCATTCCAGAG
CGCCATCATCGCTTCAAACGAGGGCGCTATTATGCTCAAAACACGTGGGC
ACACAGCGTATTGAGGAACTTCCTTTACCAATACAGGCTGCAATGCGTGT
AGTTATTACCATGACGGGGCTTTTCGGAACAGCATTTCGTCGCCCATTTC
TCCTGTGAGCTGGTAAATGGCAGAGGCGGAGGAAACCCGCTTAGAAGCCG
TGCTTGGTCTCAGCGTCGAGGGTGATGAGGGGGAGAATAGCCAGGATAAG
CATCACACGAGGGAAGTGGAGGATGCGCTCATCTTCGGAGTGGGAGCCTC
TCCCGTCAGTGATGTATGCGGAAGCCATTCCCTCCTCTCTGAAGCCGCCT
TGAAACACGTCGTTCCCTCCCCGCCTTCGTCCAACTACCTTTTGCGCGAC
GGGGACAACACTTTCTTGAGCGTGGCGCCCGCCGATCCTCACGTATTACC
AAGCGCCCGAAGCCTGCCTACCCTCTCCTCCACCTCGTCCTTGGTCGTGT
CTCCCAGCCCGGTTGATCCCTACCCCCTCCCGGGGGCCCCCGAGGACTAC
GCCGGTCTCTTTCCCGGACCTACCGACCCCCACCACCCGCCCGACATCCA
GATCTCTCCCCCCCTCGTCTTTCACCCTCCCGCAACACGGAGCGGCGAGG
GGGGGCATGGGGTTGGCCGAGGAGGGTGGAGGGGAGGTGGTCAAGGGCGT
GCCACCGCGTGCATGGACACCGTTCCCGGGGGCGGCATGGGCTGGACAGG
TCTTGTAAAACCAACCGGGGAGGGCACAATGGTTGGGGACGTGGAAGGAA
GGAAGCCGACGGCCGGGAGGGTCCCTGCGTCCTGGGAGAAGAGCCGGGGC
GCGCGGAAAGGAGAGGAGGAGGGAGGGCCTGTGGGAGGTACGGGCTCGGT
GGAGGCGGCGGAGGGCACCGCGGGAGAGATAACCGCCCCTTGCGTGCAAC
CGAAAAAGCATGCCCCGTTGGGGCAATGGGTAACGCCCCCCCAGCCCCAA
TATTCAATTTTTAAAAATCCGTTGCGGGATGTGGACGCGGCTGGCAGGTC
GGGGAGGACGGGAGCCCGCACGGGCCAGGGGCTTGGAAGGGGAGGTTCAG
GGGTGGGGGAAAGAGAGGGAGGAAGGAGCGCGAAGGCGGGGGGCGGGGAT
GAGGCGGATGGCGGAGAAAAAAGTGATGATGGTGAAGGAGGAGGAGAAGG
AAGTGGTGGAGGAGGAGGAGGAGGTGGTGCTGGAAAGGGCAAGAGCGAGG
GGCAGGGAAAGAATTTGGGCGGCAGAATGAGGACTTTTCGAGCCCTGCTA
CCAAAGACCCCAAGGATGGGATGGGGGATGGGCAGGAGAAAAGGTGAGAC
CGAGATGCCCCCTCCCTCCCGCCCTCCCTCCCGCCCTC

Coding sequence (CDS) from alignment at CM002459.1:202567..204104-

>rna2363 ID=rna2363|Name=rna2363|organism=Nannochloropsis gaditana|type=CDS|length=1222bp|location=Sequence derived from alignment at CM002459.1:202567..204104- (Nannochloropsis gaditana)
ATGGCAGAGGCGGAGGAAACCCGCTTAGAAGCCGTGCTTGGTCTCAGCGT
CGAGGGTGATGAGGGGGAGAATAGCCAGGATAAGCATCACACGAGGGAAG
TGGAGGATGCGCTCATCTTCGGAGTGGGAGCCTCTCCCGTCAGTGATGTA
TGCGGAAGCCATTCCCTCCTCTCTGAAGCCGCCTTGAAACACGTCGTTCC
CTCCCCGCCTTCGTCCAACTACCTTTTGCGCGACGGGGACAACACTTTCT
TGAGCGTGGCGCCCGCCGATCCTCACGTATTACCAAGCGCCCGAAGCCTG
CCTACCCTCTCCTCCACCTCGTCCTTGGTCGTGTCTCCCAGCCCGGTTGA
TCCCTACCCCCTCCCGGGGGCCCCCGAGGACTACGCCGGTCTCTTTCCCG
GACCTACCGACCCCCACCACCCGCCCGACATCCAGATCTCTCCCCCCCTC
GTCTTTCACCCTCCCGCAACACGGAGCGGCGAGGGGGGGCATGGGGTTGG
CCGAGGAGGGTGGAGGGGAGGTGGTCAAGGGCGTGCCACCGCGTGCATGG
ACACCGTTCCCGGGGGCGGCATGGGCTGGACAGGTCTTGTAAAACCAACC
GGGGAGGGCACAATGGTTGGGGACGTGGAAGGAAGGAAGCCGACGGCCGG
GAGGGTCCCTGCGTCCTGGGAGAAGAGCCGGGGCGCGCGGAAAGGAGAGG
AGGAGGGAGGGCCTGTGGGAGGTACGGGCTCGGTGGAGGCGGCGGAGGGC
ACCGCGGGAGAGATAACCGCCCCTTGCGTGCAACCGAAAAAGCATGCCCC
GTTGGGGCAATGGGTAACGCCCCCCCAGCCCCAATATTCAATTTTTAAAA
ATCCGTTGCGGGATGTGGACGCGGCTGGCAGGTCGGGGAGGACGGGAGCC
CGCACGGGCCAGGGGCTTGGAAGGGGAGGTTCAGGGGTGGGGGAAAGAGA
GGGAGGAAGGAGCGCGAAGGCGGGGGGCGGGGATGAGGCGGATGGCGGAG
AAAAAAGTGATGATGGTGAAGGAGGAGGAGAAGGAAGTGGTGGAGGAGGA
GGAGGAGGTGGTGCTGGAAAGGGCAAGAGCGAGGGGCAGGGAAAGAATTT
GGGCGGCAGAATGAGGACTTTTCGAGCCCTGCTACCAAAGACCCCAAGGA
TGGGATGGGGGATGGGCAGGAGAAAAGGTGAGACCGAGATGCCCCCTCCC
TCCCGCCCTCCCTCCCGCCCTC

Synonyms

Publications