rna2345, rna2345 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2345
Unique Name	rna2345
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2921
Alignment location	CM002459.1:157330..159383 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100109g20.6596.mrna
Orig protein id	gnl\|cribi\|Naga_100109g20.6596
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:157330..159383 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100109g20	gene2241	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2345	rna2345-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28328.1	cds2337	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:157330..159383+
coding sequence from alignment at CM002459.1:157330..159383+

mRNA sequence

>rna2345 ID=rna2345|Name=rna2345|organism=Nannochloropsis gaditana|type=mRNA|length=2921bp
AGAGCATATGGCAATACCCCCGCCCGTCGTCACACTCATTGCTTATACAC
TACTACCACGCCTAGTCAAGTTCTCCTTATATGTCCAGACGTTAGGACGG
GCATTCGTCCCCAAACAAGGCAGTCTTGGTGTCAGAACACGGAGACCACG
GGCGCCATGAGACACCTCTCTCCGGTTTTGATTGCTTGCGCGTGCTTGGG
CGAGTTGCACATGGACATGCGGTGATCAAAGCCTCGCTTAATGCAAGTCA
AGACATGGCGAGGGCACTTCACCATCAGCACCACCTCGTGTGACCCTTTA
CAGGCTGTCGACGCTCCATGCGTCAGGAATGTGCGTTACAAGATTGCCGA
TTTACCAATTTAATTCGTCTCATCCGATCTCGGGGACCCTGCGAGAGACG
CGACGAGCAGCTACTCTCGCTTCTGCCTAACCCTTTTGCAGCCCTTTTTC
CCCCCGGGAAGCTTGTGAAATGGACGCGAATGATGCAACTTTAGCAGCCA
ACTGCGCAGGGTTGGGTGTACCTGCGACTTATGTGACGCAAGGGTTGGAA
GCAGGTGTTCGGAAACGCCACGGCTATTTTCGGCGGCTGGTCTCTCACCG
GCGCTTGCCACCTGACGGCTGGGATGATGCCACCATCGAAGGCGTCCTGC
ACGATCTCGCCATGATGGACAGCAACAATTTTCTGGGTAACGTTGGTGTT
GGTGAGAGGGAGGCACGCGTCTATTCTTCCTTGGTGCGACGACGACATTA
CGGGCTCGGCCATGGGATGGGGCGGTCGGGAGATATCATGGAGCCGCAAC
CGAAAGCGGCGGGCTCCTCCCTCCTCGTGAAGCTCACCAACCTGCTCGCG
TTGGACGCAGTGCGGGCAGCAGGGTTGACGCGCATGCAGGATTGTGTGGT
GCTGCCTTTGGCCACGGGGATGGCCGTGACCGTGACGCTTTTAACCCTGC
GGCACGAGAGCGCCGTTTCGACCCCCACACCCGCCCCCGCCCCCACACCC
TCCTCCTCCATCGCCTCCGCCTCCTCGGTCTCGACGAAAATGAGCGGGGC
CATCCCCACGTCCACCCCTTCCCCGGGCCTCCCACGGCCAAAGCCCTTCC
TCCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCTCCTCCCTTCCT
GCCAAAGTATACGTCGTTTTCCCACGAATCGACCAAAAGTCCTGTTTAAA
ATCTATTGTAACGGCGGGTCTCCGTCCACTTATTCTTCCCATGCGCCAAT
CTTTCCTCAACGACGAGCTCGAGACAGACCTTCCCCTCCTCCATTCCCAC
CTCCTCCACCACCACGACCAAATTTTAGCCGTCCTCTCCACCACCTCCTG
CTTTGCCCCCCGCGCGCCCGACAACGTCGTGGGCATCGCGCGTCTCTGTG
CCAGCTTCCAGATCCATCACGTCGTGAACAACGCCTACGGTCTGCAATGT
TCCCGCACCGCCCATGCCCTCAACGAGGCCTGTCGGCTGGGGAGAGTAGA
CGCAGTAGTGCACAGCACCGACAAAAATTTCCTGGTCCCGGTGGGAGGCG
CGATCGTGGTGGCGCCTGCACCCGTGGGGGGAGGGAGGGAGGGAATGAGG
GAGGGAGGATGGGAGGATGGTGCGGAGCACGTCCGGGAGGCGCCGGCGGG
GCGGGCAGTGGGAAGACGGGTGCCGAGCCAAGGACAGAAAGAGGGAGGAG
GGGAGGGAGGGCGCGAAGGCCAGGATGCGCAAAGCCAGAGGGAGGTGGAA
AACGGGAGGCGGGAAGTAAGCCCGGCGAGCGGGGGGGCTGGGGAGGAGTC
CTCAAGGGTGGAGTCGAGGGGCGCTAGGGAAAGCGGAGGACGAGACGAGG
GCGGTCCGGGTAGCAGGGGGGGCAGCTGTCCACGCACGGAGAAGACGCAG
GACCAGGGGAGCGGCACAAGCTCCTGCCCCAGGGCCGAGAGCCGCCTTCG
GCGTGGCCTCCATGCCAGCACGGCTCCGGGTAGGAAGAGCCTGATCGATC
GACTCGGGAAAATGTACCCAGGCCGTGCCAATGCCACCCCTCTCCACGAC
CTCTTCATCACCCTCCTCTCCATGGGCCGCAACGGCTATTTGAAATTATT
GCGCGAACGTAACGCCCTGATTCCCGTGATGAGAGGGGGATTACAGGGGG
TGGCGGAGAAACACCAGTGTCGATTGTTAGAGACGCCGCGAAACTCGATT
TCCTTCGCTATTACCTTGAATGGACTTTTGAGGGAAGATGGAGACGGGCA
AGAAGAAGAAGCAGGGGGAGAGGGAGGGCTTTCCTTCCTGGGCTCCATGC
TCTTTGCACGCGGAGTTTCGGGGACGCGCGTGGTCATCCCTGTTAAGGTT
TCCCCTTCCTCCCCCGCTTCCTCTTCCTCCTCTTCCTCCTCCTCCTCTTC
CTCCTCCCCTTCCTCCTCCTCCTTCTCCGCCACCTCTGCTTCCTCCGTGC
ACGTCCCAACCTCCCGAGGACCTTCCAAATCCATCACGCCCCCTCCGGTC
AAGATCGTCGCGGGCGTCCCTTTCTTGGGGTACGGGTCCCACACCAACGA
AGCCTACCCCCCTGGCCCATATTTGACGGCGGCCTGCGCCCTGGGAATCA
CGAAGGACGAGGTGGAGGAATTTTTAAGGCGCTTGGATCGGACTTTGTCG
GAGTTCCAAAAAAAAAGGGGAAAAGTCGGGGCAGAGACCTGGGAGAGACT
TGAGGAAAAGAAGGAACAGCAGGCGCGGAAGGGAGGAGGTGATAACACGA
AGGAACAGGGAAGAAACATGAAGCATGAAGATAGTTAGGGCCTGTGCAGG
CTTTTGACCGTGCGTTGGGAGGCTTCCTGCCAGTCTCGCTTGCATTCATG
GCCACCACGTGAGGGAACGAGGCGGTGGCTGAGCACCCACCCATTCCCCC
TGTGCCAGCCAGCCAGACCGT

protein sequence of rna2345

>rna2345-protein ID=rna2345-protein|Name=rna2345|organism=Nannochloropsis gaditana|type=polypeptide|length=224bp
MKGSNTRTDDSLSGIRRGDATRKVKKKKIKGKLFTLTTSPLPKAKFKAIV
AAVYARKQAEAEELRTQIIHNAKLAEEEAFSRHGLDSCNQAGGCGDETQA
LPKVLESGFDALKAYDEHGRRIAPKALTTVPSLMLGSGRWREREGKVAAG
RKGEEEDSSDEEEEGGGEEGQDTLAVSQGGKGRKREQTMADLVQLHRDLA
ELQRTRTELRWLLEQVERLEYESL

mRNA from alignment at CM002459.1:157330..159383+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2345 ID=rna2345|Name=rna2345|organism=Nannochloropsis gaditana|type=mRNA|length=2054bp|location=Sequence derived from alignment at CM002459.1:157330..159383+ (Nannochloropsis gaditana)
TGAAGTGCCCTCGCCATGTCTTGACTTGCATTAAGCGAGGCTTTGATCAC
CGCATGTCCATGTGCAACTCGCCCAAGCACGCGCAAGCAATCAAAACCGG
AGAGAGGTGTCTCATGGCGCCCGTGGTCTCCGTGTTCTGACACCAAGACT
GCCTTGTTTGGGGACGAATGCCCGTCCTAACGTCTGGACATATAAGGAGA
ACTTGACTAGGCGTGGTAGTAGTGTATAAGCAATGAGTGTGACGACGGGC
GGGGGTATTGCCATATGCTCTCCTATCCCACTTCCTCGGTGCACTGCAAC
AACACCCCAGCTTCTTCCGATTGATGTTCGCATCTACTGACAGCAATTCT
CATCTGACCTGGTATCCTTGTGTCTAACCAGGTTGATTTGCACGAGCTTG
GTTTCTGTCATCAGGGAAACGATGAAAGGCAGCAACACAAGAACGGATGA
CAGTCTGTCAGGCATTAGACGGGGTGACGCGACCCGTAAagtcaagaaga
agaagatcaAGGGCAAGCTGTTCACACTCACCACGAGCCCTTTGCCAAAG
GCCAAATTTAAGGCAATTGTAGCGTGAGTgcggggaaagaaagggtagag
gacgagaagaaaaaagggtcTACtacgacggaggggaggagaggatgtga
GCGCCGGCTTCTTTCGCATTCATTCACCCCTCGTGTTGCAGTGATACTAG
GTGGAACAAAAATATTTTTACGAGGATTGGTGGCTTCTTTTACTCATAAT
TTCGTTTACGTCCCTGCGTCTTCATACATATGTTTAGTGCTGTGTATGCC
CGCAAGCAGGCAGAAGCAGAGGAGCTTCGCACCCAAATAATTCACAACGC
AAAATTGGCCGAAGAAGAAGCCTTTTCAAGACATGGTCTGGACAGCTGCA
ATCAGGCAGGAGGGTGCGGAGACGAGACGCAGGCGTTGCCCAAAGTCTTG
GAATCGGGTTTCGACGCGTTGAAGGCCTATGATGAGCATGGAAGACGAAT
CGCTCCCAAGGCATTGACGACGGTGCCCTCCTTGATGCTAGGGTCCGGGC
GTTGGCGCGAGCGCGAAGGAAAAGTAGCCGCAGGCAgaaagggcgaagag
gaggacagcagtgacgaagaggaggagggagggggggaggaggggcagga
caCGCTCGCTGTcagccaaggagggaaaggtcgTAAACGGGAGCAGACGA
TGGCCGACTTGGTGCAATTGCACCGCGATCTTGCCGAGCTTCAAAGGACG
CGGACGGAGCTGCGATGGTTGCTGGAACAGGTGGAACGCCTGGAGTACGA
AAGCCTCTAAgagagggctgggagggtcttggaagagggaagggattggg
aaggaagggaaagaaggagagcgaaTCGTTGTTATGTTGACACGGGGAGG
CTCGAGTGGTCTCGCAGAGTTCGTCGAAATCGACagagagagcgggaggg
aggacggggatgaCTTTGAGGATATATGATGGCGTCTCACAGACCTTCTA
ACGCATCATTTTTGCTATTTTACGTGGTCTGATGCCTCTTGCTGCTTGTG
ACTGTGCGCATATGCTCTTAAGCAAAGAGTTTACGTTCCAATACATATGG
TGTAGCGGAACAGAAGCACTCGTGGGCGTTGGGTTAAATATTAATGGTGG
GTATCGTAGCAATGCAGGCAGGTAATCAGATAATTTATCAAAAACGGAGG
TGCAGGCCCGCTAATGATTGAACACACCCACAGCATGATAATGACGAAGC
GGTAGGTAGCGGTATCCCGAACTTCTCGTCGGCATCGGAATATAAAGTTG
TGAGGGTGCACAAACGCTCCTCCTTACATGTAAAAGAGGTATTGAAGATA
GAACAAGGAATCAAACCTAAGAAACTGATAACTTGACGAAGACAAGAGAA
ATAGAGAGATTGccctttttaaaaaaaggcAGGCGAATCGTGGTTCACGT
CGAAAGCCACGGTAAATGAGAGAGATCACAAGCCTGGTTCCTTGACAGAT
CGATTGAAATAATGTAGTTATTgcagaaaggaaaaaaatgcatcACGCAT
TGCA

Coding sequence (CDS) from alignment at CM002459.1:157330..159383+

>rna2345 ID=rna2345|Name=rna2345|organism=Nannochloropsis gaditana|type=CDS|length=1350bp|location=Sequence derived from alignment at CM002459.1:157330..159383+ (Nannochloropsis gaditana)
ATGAAAGGCAGCAACACAAGAACGGATGACAGTCTGTCAGGCATTAGACG
GGGTGACGCGACCCGTAAagtcaagaagaagaagatcaAGGGCAAGCTGT
TCACACTCACCACGAGCCCTTTGCCAAAGGCCAAATTTAAGGCAATTGTA
GCTGCTGTGTATGCCCGCAAGCAGGCAGAAGCAGAGGAGCTTCGCACCCA
AATAATTCACAACGCAAAATTGGCCGAAGAAGAAGCCTTTTCAAGACATG
GTCTGGACAGCTGCAATCAGGCAGGAGGGTGCGGAGACGAGACGCAGGCG
TTGCCCAAAGTCTTGGAATCGGGTTTCGACGCGTTGAAGGCCTATGATGA
GCATGGAAGACGAATCGCTCCCAAGGCATTGACGACGGTGCCCTCCTTGA
TGCTAGGGTCCGGGCGTTGGCGCGAGCGCGAAGGAAAAGTAGCCGCAGGC
Agaaagggcgaagaggaggacagcagtgacgaagaggaggagggaggggg
ggaggaggggcaggacaCGCTCGCTGTcagccaaggagggaaaggtcgTA
AACGGGAGCAGACGATGGCCGACTTGGTGCAATTGCACCGCGATCTTGCC
GAGCTTCAAAGGACGCGGACGGAGCTGCGATGGTTGCTGGAACAGGTGGA
ACGCCTGGAGTACGAAAGCCTCTAAATGAAAGGCAGCAACACAAGAACGG
ATGACAGTCTGTCAGGCATTAGACGGGGTGACGCGACCCGTAAagtcaag
aagaagaagatcaAGGGCAAGCTGTTCACACTCACCACGAGCCCTTTGCC
AAAGGCCAAATTTAAGGCAATTGTAGCTGCTGTGTATGCCCGCAAGCAGG
CAGAAGCAGAGGAGCTTCGCACCCAAATAATTCACAACGCAAAATTGGCC
GAAGAAGAAGCCTTTTCAAGACATGGTCTGGACAGCTGCAATCAGGCAGG
AGGGTGCGGAGACGAGACGCAGGCGTTGCCCAAAGTCTTGGAATCGGGTT
TCGACGCGTTGAAGGCCTATGATGAGCATGGAAGACGAATCGCTCCCAAG
GCATTGACGACGGTGCCCTCCTTGATGCTAGGGTCCGGGCGTTGGCGCGA
GCGCGAAGGAAAAGTAGCCGCAGGCAgaaagggcgaagaggaggacagca
gtgacgaagaggaggagggagggggggaggaggggcaggacaCGCTCGCT
GTcagccaaggagggaaaggtcgTAAACGGGAGCAGACGATGGCCGACTT
GGTGCAATTGCACCGCGATCTTGCCGAGCTTCAAAGGACGCGGACGGAGC
TGCGATGGTTGCTGGAACAGGTGGAACGCCTGGAGTACGAAAGCCTCTAA

Synonyms

Publications