rna233, rna233 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna233
Unique Name	rna233
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2049
Alignment location	CM002455.1:588503..589776 +

Link to JBrowse

Properties


Property Name	Value
Product	formate nitrite transporter
Orig transcript id	gnl\|cribi\|Naga_100100g7.8912.mrna
Orig protein id	gnl\|cribi\|Naga_100100g7.8912
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:588503..589776 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100100g7	gene222	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna233	rna233-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30444.1	cds233	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:588503..589776+
coding sequence from alignment at CM002455.1:588503..589776+

mRNA sequence

>rna233 ID=rna233|Name=rna233|organism=Nannochloropsis gaditana|type=mRNA|length=2049bp
AGGGCTGCAGCGACAGCGGCGTCGTCGCATCCTCCCAGAAGGGAATGGGC
CTTTTTAAAAATCTGAACCCCCCTAAACGCTACAATTTCGGATCAATGTG
CCCTATTAACTACCGGCACATTTTCAAGGCATGTCAGAGAGAGAGAGAGA
GCGAGAGAGCAAGTTTTGCATACTCAATCATTTCGATTTACAAGCCTGTC
CTGCACCTCTAAACTCTGCAGTTCTTCTTCCCCATCTCACGCGTACATCC
ACTAGACACTATGATGCGGCGCCGATACGACGGAGAGTCTTTAGAGGAAA
GCTCTGACTATGTTGATGCATCTGGGTCTGACTCGGATGAGGACTCTTCA
GTCTTGGGGCATGGTTTGAAAGAGTCTCAGGCGGAATGGCTGAACTGCAC
GGGTCGAAGGCCATGGGTGTTGTTAGTTTTCGTTGCGAGCGCAATAGGCT
TTGTCATGGTCTCTTTTTCCCAAGAGACAACGGTCTCGTCAAGATCCTTC
ACTCCCTTTGCGGCTTTGCGGGGGGTATACCCTCGAATGGTAGCCCCGCC
AGTCCTAGGAGATGCGGCGATCTCTCCGAGGGAGAAAAAAATCAAGAAAA
AAGACGTCTTCAACAGTGTTAATAGCGTGGACAAGGTGTGGGTGGATGAG
GAGGCGAACCCTTTCGACAAAAACTGGGAGAAATTTCCTCCTTCCGAGCT
TGCCGACCATTGCGGTGCCTCCGACATCTTCTACTGGCAGCGCTACGACC
CCGACCTCGAGAAAGTGGTGAATCCCTGGGCCGCGCTCGGTCCAGAAAAG
AAGTATGTGACATTCGAGCCAGATCGCGGGGGCTGGAACAACATCCGAAT
GGCCATGGAGGTGGTGCTCGTCTTCGCGTATGCCACGGGCCGCACGCTCG
TCATGCCGCCCGAGCAGAACATGTACCTGCTGAACAAAGGCAGCGATCCG
GGGGACAACACCTTGCATTTCGCTGATTTCTTTTACCTGCACCGGCTTCA
GGAAAAAATGGAGATGATCGAAATGAAGGACTTTCTCGAGACAGAGGCCG
TGACGGGGAACCTGGGCGCGCTCCCTCCCTCCAACAGCACGGACCTTCGG
AGGGACGTGCTCTGGAAGTATTTGGAGGGCCTGGAGGTGGGGACGACGCA
TTGGAAGCCTTTTGACGTTTGCTTGGCTTTCCCTGAGACCCCGGGGAAGC
CTATCGAAGATCATTCGGCCGAGCAGCAGGAGCGACTGAAGGAGTTCTGC
GGGAAGCGAACGCCCGTCCACTACAACGAGACCTTGCAAGACGCGAAAGT
CATTCATTTCGGCGCGGGTCAAGGGTCGCGCGTCCTGGCGCATTTCTACA
CCTTCGAGCACTTCATGGACCCGGCCCTGGACAGGGCGGTGAAGCGCTTT
GTCAGGAGCTACATCCACTATAGAGACGAAGTCTTCTGTGCGGCTGGTCG
CATTATTGCCGCCATGGAGACTGAAGCCGGACCTGGAGGCTACAAGGCCC
TGCATATCCGCAGAGGCGATCTGCAGTTCAAGGAAGTAAAAATACCCGCG
GAGAAGATAATTGCCAACACGAAAGATATCTTGAAGGAAAATGAGACAAT
CTATATCGCCACGGATGAGACAGATGAAGCTTATTTGGACGTCTTCCGAA
AGCGTTTTAATGTCTTCTTCCTCAAGGATTTCCACGAGCGCGTTGGGTTG
CCCAAGTTAAATCAAAACTACATGGGCATGCTCGAGCAAATTGTGTGCTC
CAGATCACAGGTTTTCATCGGAACATGGTTTTCCACCTTCACTGGATACA
TAACAAGAATGCGAGGCTATTACGGCTTCGACTACCGGACGAATTGGTAC
CATTTTGGCCTGAGAAAAGACTCCTTTCAAACAGAATACCATCCACGGGA
CCCGTGGTACGTGCGAGAATGGCCAGAGGGCTGGGTGAATATTGATGAGT
AAAATCTCTGCCGAAAAGTAGCTGGCTAGAGGAAATTGTCAGGATATTAA
GATGTTTGCTTGAATCGAGAAGAAACAAATGGGAGGAGGTTGGGCCTTC

protein sequence of rna233

>rna233-protein ID=rna233-protein|Name=rna233|organism=Nannochloropsis gaditana|type=polypeptide|length=329bp
MKISTLCVLTMGMAAASASVSSFSSSSKPAKTLSTVPRLVSKVRGGNDSP
ASIVPQPLMKAPADAYKTVLALGVKKACQPASKILLLGVMAGLQVGIGAA
MAVATLGGVPLMQEQNPALAKLLFGIAGLPCSLLMVMATGAELFTGNTAV
VGTAFFEGKISLQQLLKSWSCSYAGNLIGGGLLALLCNYAGVFSQAAGTF
TAVADAKAALPFGVAVARGIICNWLVCTAVWVSTAAADLVSKAVATLMII
TIFASLGFEHSIANMFVGPFGAMQKTSRTGFVAFFVKNLVPVTIGNILGG
SFLMAGMQHLAFGGRDKTSATTTPVNKRE

mRNA from alignment at CM002455.1:588503..589776+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna233 ID=rna233|Name=rna233|organism=Nannochloropsis gaditana|type=mRNA|length=1274bp|location=Sequence derived from alignment at CM002455.1:588503..589776+ (Nannochloropsis gaditana)
ATGAAGATCTCAACTCTCTGTGGTACGTTTAAAGGCATGCAGAGCCACAG
CATCTCTAAGGCCCCGTGCCATCCCCAGAACTTGATGAGGAGGTTGATAT
GTCTCTATATGCGTAGACTAATCCTCTGCCGGCACAATAAAACCCTACAG
TGCTGACGATGGGAATGGCAGCTGCTTCTGCCTCGGTCTCATCCTTTTCT
AGTAGCAGTAAACCGGCGAAGACCCTCTCCACCGTGCCGCGTTTGGTGTC
TAAAGTCCGCGGAGGAAATGACTCGCCCGCGTCTATCGTTCCGCAGCCTC
TTATGAAAGCCCCTGCGGATGCTTACAAGACAGTCTTGGCTCTGGGAGTC
AAGAAAGCCTGCCAACCTGCCAGTAAAATTCTCCTGCTCGGTGTGATGGC
GGGGCTCCAGGTCGGTATCGGGGCGGCAATGGCCGTGGCCACCCTCGGAG
GAGTTCCGTTAATGCAAGAACAGAATCCCGCTCTCGCAAAACTGCTCTTC
GGCATTGCGGGGCTCCCCTGCTCGCTGCTCATGGTCATGGCGACGGGCGC
AGAGCTCTTCACAGGCAATACTGCTGTGGTAGGCACAGCGTTTTTCGAGG
GCAAAATTTCCTTGCAGCAGCTTCTCAAGTCCTGGTCTTGCTCTTACGCG
GGCAACCTCATAGGGGGAGGATTGCTGGCCCTTCTTTGCAACTACGCCGG
GGTTTTCTCCCAGGCGGCAGGCACATTCACGGCTGTCGCTGATGCTAAGG
CTGCTTTGCCCTTTGGGGTGGCGGTTGCACGCGGCATTATCTGTAATTGG
CTGGTGTGCACTGCGGTCTGGGTCTCCACAGCGGCAGCCGATTTGGTCTC
CAAAGCCGTGGCAACTCTCATGATTATCACCATCTTTGCCTCCTTGGGCT
TCGAGCACTCGATTGCCAACATGTTCGTAGGGCCTTTTGGCGCCATGCAA
AAGACGTCGCGGACGGGGTTCGTCGCTTTTTTCGTCAAAAACCTGGTACA
ACGTTCTCCATTTTCATCTTTTGTTTCCTTGGTCAATAGTTTGAGATTTT
TTTCTCAAAGCACGGCTttaccctttcccctccgttcaTTTAGAACAAGC
AGCCATCTTAATCGACGCGTCTCACCAATAACTCTTCGTGACCCAACACA
GGTGCCTGTGACGATTGGCAACATCCTCGGGGGTTCCTTCTTGATGGCAG
GAATGCAGCACCTCGCCTTTGGGGGCAGGGACAAGACCTCCGCAACCACT
ACCCCCGTGAACAAACGAGAGTGA

Coding sequence (CDS) from alignment at CM002455.1:588503..589776+

>rna233 ID=rna233|Name=rna233|organism=Nannochloropsis gaditana|type=CDS|length=2970bp|location=Sequence derived from alignment at CM002455.1:588503..589776+ (Nannochloropsis gaditana)
ATGAAGATCTCAACTCTCTGTGTGCTGACGATGGGAATGGCAGCTGCTTC
TGCCTCGGTCTCATCCTTTTCTAGTAGCAGTAAACCGGCGAAGACCCTCT
CCACCGTGCCGCGTTTGGTGTCTAAAGTCCGCGGAGGAAATGACTCGCCC
GCGTCTATCGTTCCGCAGCCTCTTATGAAAGCCCCTGCGGATGCTTACAA
GACAGTCTTGGCTCTGGGAGTCAAGAAAGCCTGCCAACCTGCCAGTAAAA
TTCTCCTGCTCGGTGTGATGGCGGGGCTCCAGGTCGGTATCGGGGCGGCA
ATGGCCGTGGCCACCCTCGGAGGAGTTCCGTTAATGCAAGAACAGAATCC
CGCTCTCGCAAAACTGCTCTTCGGCATTGCGGGGCTCCCCTGCTCGCTGC
TCATGGTCATGGCGACGGGCGCAGAGCTCTTCACAGGCAATACTGCTGTG
GTAGGCACAGCGTTTTTCGAGGGCAAAATTTCCTTGCAGCAGCTTCTCAA
GTCCTGGTCTTGCTCTTACGCGGGCAACCTCATAGGGGGAGGATTGCTGG
CCCTTCTTTGCAACTACGCCGGGGTTTTCTCCCAGGCGGCAGGCACATTC
ACGGCTGTCGCTGATGCTAAGGCTGCTTTGCCCTTTGGGGTGGCGGTTGC
ACGCGGCATTATCTGTAATTGGCTGGTGTGCACTGCGGTCTGGGTCTCCA
CAGCGGCAGCCGATTTGGTCTCCAAAGCCGTGGCAACTCTCATGATTATC
ACCATCTTTGCCTCCTTGGGCTTCGAGCACTCGATTGCCAACATGTTCGT
AGGGCCTTTTGGCGCCATGCAAAAGACGTCGCGGACGGGGTTCGTCGCTT
TTTTCGTCAAAAACCTGGTGCCTGTGACGATTGGCAACATCCTCGGGGGT
TCCTTCTTGATGGCAGGAATGCAGCACCTCGCCTTTGGGGGCAGGGACAA
GACCTCCGCAACCACTACCCCCGTGAACAAACGAGAGTGAATGAAGATCT
CAACTCTCTGTGTGCTGACGATGGGAATGGCAGCTGCTTCTGCCTCGGTC
TCATCCTTTTCTAGTAGCAGTAAACCGGCGAAGACCCTCTCCACCGTGCC
GCGTTTGGTGTCTAAAGTCCGCGGAGGAAATGACTCGCCCGCGTCTATCG
TTCCGCAGCCTCTTATGAAAGCCCCTGCGGATGCTTACAAGACAGTCTTG
GCTCTGGGAGTCAAGAAAGCCTGCCAACCTGCCAGTAAAATTCTCCTGCT
CGGTGTGATGGCGGGGCTCCAGGTCGGTATCGGGGCGGCAATGGCCGTGG
CCACCCTCGGAGGAGTTCCGTTAATGCAAGAACAGAATCCCGCTCTCGCA
AAACTGCTCTTCGGCATTGCGGGGCTCCCCTGCTCGCTGCTCATGGTCAT
GGCGACGGGCGCAGAGCTCTTCACAGGCAATACTGCTGTGGTAGGCACAG
CGTTTTTCGAGGGCAAAATTTCCTTGCAGCAGCTTCTCAAGTCCTGGTCT
TGCTCTTACGCGGGCAACCTCATAGGGGGAGGATTGCTGGCCCTTCTTTG
CAACTACGCCGGGGTTTTCTCCCAGGCGGCAGGCACATTCACGGCTGTCG
CTGATGCTAAGGCTGCTTTGCCCTTTGGGGTGGCGGTTGCACGCGGCATT
ATCTGTAATTGGCTGGTGTGCACTGCGGTCTGGGTCTCCACAGCGGCAGC
CGATTTGGTCTCCAAAGCCGTGGCAACTCTCATGATTATCACCATCTTTG
CCTCCTTGGGCTTCGAGCACTCGATTGCCAACATGTTCGTAGGGCCTTTT
GGCGCCATGCAAAAGACGTCGCGGACGGGGTTCGTCGCTTTTTTCGTCAA
AAACCTGGTGCCTGTGACGATTGGCAACATCCTCGGGGGTTCCTTCTTGA
TGGCAGGAATGCAGCACCTCGCCTTTGGGGGCAGGGACAAGACCTCCGCA
ACCACTACCCCCGTGAACAAACGAGAGTGAATGAAGATCTCAACTCTCTG
TGTGCTGACGATGGGAATGGCAGCTGCTTCTGCCTCGGTCTCATCCTTTT
CTAGTAGCAGTAAACCGGCGAAGACCCTCTCCACCGTGCCGCGTTTGGTG
TCTAAAGTCCGCGGAGGAAATGACTCGCCCGCGTCTATCGTTCCGCAGCC
TCTTATGAAAGCCCCTGCGGATGCTTACAAGACAGTCTTGGCTCTGGGAG
TCAAGAAAGCCTGCCAACCTGCCAGTAAAATTCTCCTGCTCGGTGTGATG
GCGGGGCTCCAGGTCGGTATCGGGGCGGCAATGGCCGTGGCCACCCTCGG
AGGAGTTCCGTTAATGCAAGAACAGAATCCCGCTCTCGCAAAACTGCTCT
TCGGCATTGCGGGGCTCCCCTGCTCGCTGCTCATGGTCATGGCGACGGGC
GCAGAGCTCTTCACAGGCAATACTGCTGTGGTAGGCACAGCGTTTTTCGA
GGGCAAAATTTCCTTGCAGCAGCTTCTCAAGTCCTGGTCTTGCTCTTACG
CGGGCAACCTCATAGGGGGAGGATTGCTGGCCCTTCTTTGCAACTACGCC
GGGGTTTTCTCCCAGGCGGCAGGCACATTCACGGCTGTCGCTGATGCTAA
GGCTGCTTTGCCCTTTGGGGTGGCGGTTGCACGCGGCATTATCTGTAATT
GGCTGGTGTGCACTGCGGTCTGGGTCTCCACAGCGGCAGCCGATTTGGTC
TCCAAAGCCGTGGCAACTCTCATGATTATCACCATCTTTGCCTCCTTGGG
CTTCGAGCACTCGATTGCCAACATGTTCGTAGGGCCTTTTGGCGCCATGC
AAAAGACGTCGCGGACGGGGTTCGTCGCTTTTTTCGTCAAAAACCTGGTG
CCTGTGACGATTGGCAACATCCTCGGGGGTTCCTTCTTGATGGCAGGAAT
GCAGCACCTCGCCTTTGGGGGCAGGGACAAGACCTCCGCAACCACTACCC
CCGTGAACAAACGAGAGTGA

Synonyms

Publications