rna2323, rna2323 (mRNA) Nannochloropsis gaditana

Overview
Namerna2323
Unique Namerna2323
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1044
Alignment locationCM002459.1:111981..112754 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100368g6.3794.mrna
Orig protein idgnl|cribi|Naga_100368g6.3794
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:111981..112754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100368g6gene2218Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2323rna2323-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28357.1cds2315Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2323 ID=rna2323|Name=rna2323|organism=Nannochloropsis gaditana|type=mRNA|length=1044bp
ATGGTGGGGACAACGCGACAACAGCACACTCCTTTCTTCCTGCTGTGCCT
GTTTTTCCTGTATGTGGCCCGGGCTAGGAATACCCGAGATAGCACGATAC
CAACACCACCTTCATGGGGCCCAACCTTTTCCGTGGCGTATTTAGCTACG
GACCCAAGCCCAGTAGGAAGGCTGCCGCCTTTCCCCTTCTCCTACAAAGG
CACTTGGCACTACCATTGGCCACTACAACGTCAACGCTTGGAGTACAATT
TCTATGAGGAAAGTCCTGGAAGCACAGGGGCCGTGGAGAGGAAAGAGAAA
ACCCTGGTGGAACTCTGGCGGGGGCACGAGGAAGTGTACGTCTTTTCCCC
CACGGACCGTTCGTGCCGGTTGCTGGACCTATGGCCGGACTTCACGCCCC
TCTCTCCCCACTGGCTGAACGGACATGGGACGGGGAAGAAGAAGGGGAGA
GAAGCCTTGTACAGGGGCCGGGCGTACGACGTGATGCGCAGTGTTCAGAA
TGGGAGCGAGGTCTTGGTGGAGGTGGAGAGATGGGAGGGCGGGGCGGAGG
GCGGGGTAGGGACGGCGGTCCCAGGAATGGTTGCATACTTCTTGTCGCCT
CCGCGTGAGGATCCTGGAAAGGTAGTGCAGGAAACGAGGGGGAAAGTGGA
CGTCCCTCTTCGTGTTCTAGGTCCCGTGCCAGGGTGGGGCGAAGGGGGGG
AAGGAGGAAGGGAGGGAGGAAGGGAGGAGGCAGTAAGGGTGTTCTCTTTC
AGTGACTTCTCCACTCAACCGCCGTCGGAAAATTTATTCGTCCTGCCCAG
TTACTGCCGCAATGCGAGCGTGGTGGTCCTTCCCCAGGACATGGGGGAGG
GCGGGGGGGAGGGCGGGAGGGAGGGCGGCTTGGGGCGCCTCCGGGTCGAG
GCGTTGCACACGGCCTTTTTGGGCCGTGGTCGAGGAGGGGAAGCTGCGGA
AGAGTAGGTGGCACGTGAAGGGTGGGAGATTCGAGGAGAGGGGAGAGAAG
AATCAGACGAACGACCATAAAAAGTATAAGTATTTGCCTCCAAA
back to top

protein sequence of rna2323

>rna2323-protein ID=rna2323-protein|Name=rna2323|organism=Nannochloropsis gaditana|type=polypeptide|length=191bp
MSPSFPHDPLPLVVHGSPPLVLRRRSQRAEVKILSFCSEASKAVYTRVLD
DMMMQFYGRSAPSEEGQFPQEVERTIWKTKNRSRRKEHDCTAHPHRRGMP
EPLPRSQGQEYEQLTCVLTRLRSAVERVGGQTTPLLILGEGNIFLLFLRA
AGVRRQWCRREDGVFSSRERSRGEILKARGMTDEDQICSDV
back to top

mRNA from alignment at CM002459.1:111981..112754-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2323 ID=rna2323|Name=rna2323|organism=Nannochloropsis gaditana|type=mRNA|length=774bp|location=Sequence derived from alignment at CM002459.1:111981..112754- (Nannochloropsis gaditana)
ATGTCCCCCTCCTTTCCACATGACCCGTTGCCTTTGGTGGTACACGGCTC
TCCCCCCCTGGTTCTGAGGAGAAGATCGCAACGGTGATGGTCCCTCTGCG
TTGACAGGTTTTTGGCCGGCGCGACCTTGGGGAGTGGGCAAGTGGGGGGG
TTATTCTGACAGGGGAAAAGAGCGGAGGTGAAAATTTTAAGCTTTTGTTC
GGAGGCAAGCAAAGCAGTCTACACGAGAGTACTCGATGATATGATGATGC
AATTTTACGGGAGGAGCGCACCCTCGGAAGAGGGACAATTTCCGCAGGAA
GTAGAAAGGACTATATGGAAGACAAAGAACAGGTCGAGGCGCAAAGAGCA
TGATTGTACGGCACACCCCCACAGAAGGGGTATGCCGGAGCCGCTGCCAC
GGTCGCAGGGTCAGGAATATGAGCAATTAAGTTGAAAAGCACGCAAAAGC
GAATGATGAAAAACATGATTTGATGCGAGGCGGGGTTTTCTAGCCTGTGT
GCTGACTCGATTGAGATCAGCAGTTGAAAGGGTAGGTGGGCAGACGAGTG
TGGAACATACTTTACCATAGCAATGCGTTGAAATATCTACTCAAGCGCCG
CTCCTAATTCTTGGCGAGGGGAATATTTTCTTGCTCTTTTTACGGGCCGC
TGGCGTGCGTCGTCAGTGGTGCAGAAGGGAGGATGGAGTGTTTTCTTCAA
GGGAGAGGAGTCGGGGGGAAATCTTGAAGGCAAGAGGAATGACCGATGAG
GACCAGATATGTTCGGACGTGTGA
back to top

Coding sequence (CDS) from alignment at CM002459.1:111981..112754-

>rna2323 ID=rna2323|Name=rna2323|organism=Nannochloropsis gaditana|type=CDS|length=2304bp|location=Sequence derived from alignment at CM002459.1:111981..112754- (Nannochloropsis gaditana)
CGCCGCTCCTAATTCTTGGCGAGGGGAATATTTTCTTGCTCTTTTTACGG
GCCGCTGGCGTGCGTCGTCAGTGGTGCAGAAGGGAGGATGGAGTGTTTTC
TTCAAGGGAGAGGAGTCGGGGGGAAATCTTGAAGGCAAGAGGAATGACCG
ATGAGGACCAGATATGTTCGGACGTGTGACCTGTGTGCTGACTCGATTGA
GATCAGCAGTTGAAAGGGTAGGTGGGCAGACGAAGCGGAGGTGAAAATTT
TAAGCTTTTGTTCGGAGGCAAGCAAAGCAGTCTACACGAGAGTACTCGAT
GATATGATGATGCAATTTTACGGGAGGAGCGCACCCTCGGAAGAGGGACA
ATTTCCGCAGGAAGTAGAAAGGACTATATGGAAGACAAAGAACAGGTCGA
GGCGCAAAGAGCATGATTGTACGGCACACCCCCACAGAAGGGGTATGCCG
GAGCCGCTGCCACGGTCGCAGGGTCAGGAATATGAGCAATTAAATGTCCC
CCTCCTTTCCACATGACCCGTTGCCTTTGGTGGTACACGGCTCTCCCCCC
CTGGTTCTGAGGAGAAGATCGCAACGCGCCGCTCCTAATTCTTGGCGAGG
GGAATATTTTCTTGCTCTTTTTACGGGCCGCTGGCGTGCGTCGTCAGTGG
TGCAGAAGGGAGGATGGAGTGTTTTCTTCAAGGGAGAGGAGTCGGGGGGA
AATCTTGAAGGCAAGAGGAATGACCGATGAGGACCAGATATGTTCGGACG
TGTGACCTGTGTGCTGACTCGATTGAGATCAGCAGTTGAAAGGGTAGGTG
GGCAGACGAAGCGGAGGTGAAAATTTTAAGCTTTTGTTCGGAGGCAAGCA
AAGCAGTCTACACGAGAGTACTCGATGATATGATGATGCAATTTTACGGG
AGGAGCGCACCCTCGGAAGAGGGACAATTTCCGCAGGAAGTAGAAAGGAC
TATATGGAAGACAAAGAACAGGTCGAGGCGCAAAGAGCATGATTGTACGG
CACACCCCCACAGAAGGGGTATGCCGGAGCCGCTGCCACGGTCGCAGGGT
CAGGAATATGAGCAATTAAATGTCCCCCTCCTTTCCACATGACCCGTTGC
CTTTGGTGGTACACGGCTCTCCCCCCCTGGTTCTGAGGAGAAGATCGCAA
CGCGCCGCTCCTAATTCTTGGCGAGGGGAATATTTTCTTGCTCTTTTTAC
GGGCCGCTGGCGTGCGTCGTCAGTGGTGCAGAAGGGAGGATGGAGTGTTT
TCTTCAAGGGAGAGGAGTCGGGGGGAAATCTTGAAGGCAAGAGGAATGAC
CGATGAGGACCAGATATGTTCGGACGTGTGACCTGTGTGCTGACTCGATT
GAGATCAGCAGTTGAAAGGGTAGGTGGGCAGACGAAGCGGAGGTGAAAAT
TTTAAGCTTTTGTTCGGAGGCAAGCAAAGCAGTCTACACGAGAGTACTCG
ATGATATGATGATGCAATTTTACGGGAGGAGCGCACCCTCGGAAGAGGGA
CAATTTCCGCAGGAAGTAGAAAGGACTATATGGAAGACAAAGAACAGGTC
GAGGCGCAAAGAGCATGATTGTACGGCACACCCCCACAGAAGGGGTATGC
CGGAGCCGCTGCCACGGTCGCAGGGTCAGGAATATGAGCAATTAAATGTC
CCCCTCCTTTCCACATGACCCGTTGCCTTTGGTGGTACACGGCTCTCCCC
CCCTGGTTCTGAGGAGAAGATCGCAACGCGCCGCTCCTAATTCTTGGCGA
GGGGAATATTTTCTTGCTCTTTTTACGGGCCGCTGGCGTGCGTCGTCAGT
GGTGCAGAAGGGAGGATGGAGTGTTTTCTTCAAGGGAGAGGAGTCGGGGG
GAAATCTTGAAGGCAAGAGGAATGACCGATGAGGACCAGATATGTTCGGA
CGTGTGACCTGTGTGCTGACTCGATTGAGATCAGCAGTTGAAAGGGTAGG
TGGGCAGACGAAGCGGAGGTGAAAATTTTAAGCTTTTGTTCGGAGGCAAG
CAAAGCAGTCTACACGAGAGTACTCGATGATATGATGATGCAATTTTACG
GGAGGAGCGCACCCTCGGAAGAGGGACAATTTCCGCAGGAAGTAGAAAGG
ACTATATGGAAGACAAAGAACAGGTCGAGGCGCAAAGAGCATGATTGTAC
GGCACACCCCCACAGAAGGGGTATGCCGGAGCCGCTGCCACGGTCGCAGG
GTCAGGAATATGAGCAATTAAATGTCCCCCTCCTTTCCACATGACCCGTT
GCCTTTGGTGGTACACGGCTCTCCCCCCCTGGTTCTGAGGAGAAGATCGC
AACG
back to top
Synonyms
Publications