rna2320, rna2320 (mRNA) Nannochloropsis gaditana

Overview
Namerna2320
Unique Namerna2320
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length474
Alignment locationCM002459.1:108869..109186 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100368g9.3793.mrna
Orig protein idgnl|cribi|Naga_100368g9.3793
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:108869..109186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100368g9gene2215Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2320rna2320-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28356.1cds2312Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2320 ID=rna2320|Name=rna2320|organism=Nannochloropsis gaditana|type=mRNA|length=474bp
GATGGCACCGGGGCCGGACCGCACAGGAACGGTGGTGGGGAAGCCTGTGG
ACGATGCCAGGTCGCTCCCAGAGGGGACATCGGCCGCCGACGGGAGCCCG
TCGCACTCCTGGGGGCTGGACCCTCTCTTTTGGACATACATCCGTGCTCT
GGCTTGCATTCTTTCTCCTCCGCACCTGCAGTACCTCGAGGGCTTTGATT
TCGGTCCTTTTTTATTGGGTCCAGGCGAGCGGCCTGTGTGCAAAGCCATG
CTAGTGGGTACAGTGGTGGCCGTGCGACAGTTGAAGCGGCAAGGTAGGGG
CTCGAGGGGGAGGAGAAAACGGGGATCCAGGAGGAAGGGAGGGAGCTAGG
GCGGGGAAAGGCGTCTCACGTTCCTTCCCGACTCATCACGCCAAAGCCTC
CTCCGCGCCCATCAATGGGCCGGCGTTTCTGCTACGCGCTCCGATCCTCA
TTCCTTCTCCATGTATTCCAACCC
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protein sequence of rna2320

>rna2320-protein ID=rna2320-protein|Name=rna2320|organism=Nannochloropsis gaditana|type=polypeptide|length=70bp
MRQISVVYIRYDVQNVICNGVTGRAREDCSKEEWDEAEKGSVLSMQTGAV
RLKRLLNPLQPRFSCSSKLC
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mRNA from alignment at CM002459.1:108869..109186+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2320 ID=rna2320|Name=rna2320|organism=Nannochloropsis gaditana|type=mRNA|length=318bp|location=Sequence derived from alignment at CM002459.1:108869..109186+ (Nannochloropsis gaditana)
ATGCGTCAAATAAGTGTAGTGTATATAGCGCATATACAAAAAGATGTGAT
TTGTAACGGCGCGACGGGACGCCGCGGGAGATAGATCGATCCACGTTGTG
TATTAACTTGTGATCGATGAAATAGATATATAAGATATGATGTACAAAAT
GTGATATGTAACGGCGTGACGGGACGTGCACGGGAAGATTGTTCGAAAGA
AGAATgggacgaggcagagaagggcTCGGTTTTGTCTATGCAGACCGGAG
CTGTCAGGTTGAAGCGCCTCCTCAACCCTTTACAGCCTCGCTTTTCATGT
TCCTCGAAACTTTGCTAG
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Coding sequence (CDS) from alignment at CM002459.1:108869..109186+

>rna2320 ID=rna2320|Name=rna2320|organism=Nannochloropsis gaditana|type=CDS|length=426bp|location=Sequence derived from alignment at CM002459.1:108869..109186+ (Nannochloropsis gaditana)
ATGCGTCAAATAAGTGTAGTATATATAAGATATGATGTACAAAATGTGAT
ATGTAACGGCGTGACGGGACGTGCACGGGAAGATTGTTCGAAAGAAGAAT
gggacgaggcagagaagggcTCGGTTTTGTCTATGCAGACCGGAGCTGTC
AGGTTGAAGCGCCTCCTCAACCCTTTACAGCCTCGCTTTTCATGTTCCTC
GAAACTTTGCTAGATGCGTCAAATAAGTGTAGTATATATAAGATATGATG
TACAAAATGTGATATGTAACGGCGTGACGGGACGTGCACGGGAAGATTGT
TCGAAAGAAGAATgggacgaggcagagaagggcTCGGTTTTGTCTATGCA
GACCGGAGCTGTCAGGTTGAAGCGCCTCCTCAACCCTTTACAGCCTCGCT
TTTCATGTTCCTCGAAACTTTGCTAG
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Synonyms
Publications