rna2316, rna2316 (mRNA) Nannochloropsis gaditana

Overview
Namerna2316
Unique Namerna2316
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length390
Alignment locationCM002459.1:99335..99787 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101258g2.4087.mrna
Orig protein idgnl|cribi|Naga_101258g2.4087
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:99335..99787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101258g2gene2211Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2316rna2316-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28365.1cds2308Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2316 ID=rna2316|Name=rna2316|organism=Nannochloropsis gaditana|type=mRNA|length=390bp
ATGACAGCACAACGTATTTTTGTGCCGATCTTCCTGTGCTTGGCAAGTGC
CAGCGCATTTTTCATGGCGCCGCCACGGTCGATTCTCAAGGCTGGGGAAG
TGGTGTCGCTGCCCGATCATTTGTTTTCTTCCTCTCTGACCGAGCAGCAG
GCCGGACGCAGCAAAGGCGTTCTTTTCTCACTCGTGATTAATCCGAAACG
ACAAGGTATTACCCAACTCGGAGTGGAGGAAATTAAGGCGAGAAAAGCGG
CTTTGCTGCGGACTTGCAGGGGGCTGTCTTGGTCTCGGGGTCTCTGGAGG
AGGAGGTGTTCACGCTCCTCAACGACCAGCGGGTGTGGACACGCATCACG
GCCTTTGCCGAGGATGCGGTTTCGGCCCGCAAGCGGTTGA
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protein sequence of rna2316

>rna2316-protein ID=rna2316-protein|Name=rna2316|organism=Nannochloropsis gaditana|type=polypeptide|length=92bp
MDKNRSNAYNFRKQHETRCDEVTERLQPGKGLSSDVGVLLAPNIVRIVPE
VASPALSGRSLIPPVNEAQKREPFLQKKESNICVSIKWRLPW
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mRNA from alignment at CM002459.1:99335..99787+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2316 ID=rna2316|Name=rna2316|organism=Nannochloropsis gaditana|type=mRNA|length=453bp|location=Sequence derived from alignment at CM002459.1:99335..99787+ (Nannochloropsis gaditana)
ATGAAACAAATTGGAGCTCGACCACCATGTATTACCATCCACACCCACAA
AGATCATCCATCCCTGCACAGTCGGGTCACGGGAAGACTCGCGTGGTCTT
GATGAGTAAGCAAAGCGAGATATGAAGGGGTGTCGCCGTTCCATCTCGTG
CCGGGCGTGGGACGCGGCGCCGTGATGGATAAAAACAGGTCCAACGCGTA
CAATTTTCGAAAGCAGCATGAGACGCGGTGTGACGAGGTCACCGAACGCC
TCCAGCCAGGGAAAGGGCTATCGTCAGACGTTGGGGTTTTACTGGCACCA
AACATAGTAAGAATTGTTCCAGAGGTTGCATCACCCGCGCTGTCAGGGAG
GTCGCTCATTCCCCCTGTCAATGAGGCACAAAAACGAGAACCATTTCTCC
AAAAGAAGGAATCAAATATATGTGTATCCATCAAGTGGCGACTTCCCTGG
TGA
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Coding sequence (CDS) from alignment at CM002459.1:99335..99787+

>rna2316 ID=rna2316|Name=rna2316|organism=Nannochloropsis gaditana|type=CDS|length=279bp|location=Sequence derived from alignment at CM002459.1:99335..99787+ (Nannochloropsis gaditana)
ATGGATAAAAACAGGTCCAACGCGTACAATTTTCGAAAGCAGCATGAGAC
GCGGTGTGACGAGGTCACCGAACGCCTCCAGCCAGGGAAAGGGCTATCGT
CAGACGTTGGGGTTTTACTGGCACCAAACATAGTAAGAATTGTTCCAGAG
GTTGCATCACCCGCGCTGTCAGGGAGGTCGCTCATTCCCCCTGTCAATGA
GGCACAAAAACGAGAACCATTTCTCCAAAAGAAGGAATCAAATATATGTG
TATCCATCAAGTGGCGACTTCCCTGGTGA
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Synonyms
Publications