rna231, rna231 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna231
Unique Name	rna231
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	525
Alignment location	CM002455.1:584075..585250 -

Link to JBrowse

Properties


Property Name	Value
Product	gdp-mannose transporter
Orig transcript id	gnl\|cribi\|Naga_100100g9.8914.mrna
Orig protein id	gnl\|cribi\|Naga_100100g9.8914
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:584075..585250 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100100g9	gene220	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30446.1	cds231	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna231	rna231-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:584075..585250-
coding sequence from alignment at CM002455.1:584075..585250-

mRNA sequence

>rna231 ID=rna231|Name=rna231|organism=Nannochloropsis gaditana|type=mRNA|length=525bp
ATGAAGGCCGCTTCCACACCCCTTTCCTTCAATCTCCCCCTCTTTACCTC
TCCTTCCCCTTTTTGCGATAGCTCAAATGACAATGCCATCTTCGTCTGCC
AGCATCGCAAAGATGAGAAGGGAATGTCAAGGGCGACCGAGATGCGTTCA
CCTAGACAATTTTTTCCTGCCGTTGGCATCTGTAGCACGTTGTTTTCAAT
TTTTCGGATATCTGAAGGACAATACCCTAGGAGTGTGACGTTTTATGTGT
CGTGCCCGTCGGCTTGTGGCTTTTGTGCGATCAAAGTTGTGTGCGTGACA
AACAGACAAAGACAGATAGATAGACAGGAGGATAGTGAAGGCGGACGCAA
GCAGTGGCAAAGGAGATCATGTGTTGGGTCTGCTGTGTGTTTGATGTCGG
TGAGTTTCTCGCTCCCCACTATTTGTATTACGTGTTGCTGCGTCATTGTG
CTCTACTCCGTGACTGTGTTTGTTTTACATCGACAGAGGTGGTGCCGAAA
GCGAGGAGCGTCCTCTTCCATTTGA

protein sequence of rna231

>rna231-protein ID=rna231-protein|Name=rna231|organism=Nannochloropsis gaditana|type=polypeptide|length=391bp
MSTKGIGTEDSAIGYFKFKGATRDDEAEDPLLIEMRQTKNLASHSNGTGT
SFVADAATSSSSVSTTSSTPTSLNAAGAPTSSNESTSAAIISCFAYTFCS
ITMVLTNKALASQYDADIDFLVIAFQSLCAVLLVLSCDTLGFIQHGSAKF
DPSVALQWLPVNLFFVSMLSTGFLSLRYLNVPMVTIFKNLTNVGIMWGEW
SLYGAHVSLGAILACAIMILGAVLAAANDITFSGIGYFWMLSNCVCCAGY
VLYMKHATKTVRLPKFAMVFYNNLLSLPILLAGAAVRGEYTTFLWSEDLH
TAAYVSLSLYAGLVGFALNLATLWCVSNNSATTYSVVGAMNKIPLAVVGW
LLFRTPITQKALIFLSLSMCGGFLYTYTKLREANQAAGLPR

mRNA from alignment at CM002455.1:584075..585250-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna231 ID=rna231|Name=rna231|organism=Nannochloropsis gaditana|type=mRNA|length=1176bp|location=Sequence derived from alignment at CM002455.1:584075..585250- (Nannochloropsis gaditana)
ATGTCCACGAAGGGCATCGGAACGGAGGATAGCGCGATCGGTTACTTCAA
ATTCAAAGGAGCTACCCGAGATGACGAGGCGGAGGACCCTCTCCTGATAG
AAATGCGCCAGACCAAAAACCTGGCCAGCCACTCAAACGGCACTGGGACT
TCATTTGTCGCGGATGCTGCTACTTCTTCGTCTTCAGTATCGACAACATC
ATCAACTCCGACGTCTTTGAATGCGGCGGGTGCCCCGACGAGTTCTAACG
AATCCACTTCGGCAGCAATTATCTCCTGCTTCGCTTATACTTTCTGCTCC
ATTACCATGGTCCTTACCAATAAGGCCCTGGCGTCGCAGTACGACGCCGA
CATCGACTTCCTTGTGATTGCATTTCAAAGTCTCTGTGCGGTTTTGCTTG
TCTTATCGTGCGATACCCTGGGGTTCATTCAGCATGGAAGTGCCAAATTT
GACCCCAGCGTGGCCCTCCAATGGCTCCCGGTCAACCTCTTCTTTGTCAG
CATGCTCTCCACGGGGTTCCTGAGCCTCAGGTACCTGAATGTCCCCATGG
TTACCATATTCAAAAACCTGACCAACGTGGGAATAATGTGGGGCGAATGG
TCTTTGTACGGCGCGCACGTCTCGCTGGGCGCTATCCTTGCCTGCGCCAT
CATGATCTTGGGTGCCGTATTGGCCGCCGCCAACGATATCACATTTTCGG
GCATTGGCTATTTCTGGATGTTATCAAATTGTGTGTGCTGCGCGGGATAC
GTCCTGTACATGAAGCACGCCACTAAGACGGTGCGCCTGCCAAAGTTTGC
CATGGTCTTCTACAACAATCTCTTGTCTCTGCCTATTTTGCTGGCGGGGG
CAGCGGTCCGAGGGGAATATACGACATTTCTCTGGAGCGAAGACCTGCAC
ACAGCAGCCTACGTGAGCCTATCTCTGTATGCAGGCTTGGTGGGGTTCGC
CCTGAATTTGGCCACATTGTGGTGCGTATCCAACAACTCGGCCACCACCT
ATTCCGTGGTAGGAGCCATGAACAAAATTCCACTCGCGGTCGTCGGATGG
CTGCTTTTCAGGACGCCAATAACGCAAAAGGCCTTGATCTTTCTCTCCTT
GAGTATGTGCGGGGGATTTTTGTATACCTACACGAAGCTTCGAGAGGCGA
ACCAGGCGGCCGGCCTGCCGAGGTGA

Coding sequence (CDS) from alignment at CM002455.1:584075..585250-

>rna231 ID=rna231|Name=rna231|organism=Nannochloropsis gaditana|type=CDS|length=1176bp|location=Sequence derived from alignment at CM002455.1:584075..585250- (Nannochloropsis gaditana)
ATGTCCACGAAGGGCATCGGAACGGAGGATAGCGCGATCGGTTACTTCAA
ATTCAAAGGAGCTACCCGAGATGACGAGGCGGAGGACCCTCTCCTGATAG
AAATGCGCCAGACCAAAAACCTGGCCAGCCACTCAAACGGCACTGGGACT
TCATTTGTCGCGGATGCTGCTACTTCTTCGTCTTCAGTATCGACAACATC
ATCAACTCCGACGTCTTTGAATGCGGCGGGTGCCCCGACGAGTTCTAACG
AATCCACTTCGGCAGCAATTATCTCCTGCTTCGCTTATACTTTCTGCTCC
ATTACCATGGTCCTTACCAATAAGGCCCTGGCGTCGCAGTACGACGCCGA
CATCGACTTCCTTGTGATTGCATTTCAAAGTCTCTGTGCGGTTTTGCTTG
TCTTATCGTGCGATACCCTGGGGTTCATTCAGCATGGAAGTGCCAAATTT
GACCCCAGCGTGGCCCTCCAATGGCTCCCGGTCAACCTCTTCTTTGTCAG
CATGCTCTCCACGGGGTTCCTGAGCCTCAGGTACCTGAATGTCCCCATGG
TTACCATATTCAAAAACCTGACCAACGTGGGAATAATGTGGGGCGAATGG
TCTTTGTACGGCGCGCACGTCTCGCTGGGCGCTATCCTTGCCTGCGCCAT
CATGATCTTGGGTGCCGTATTGGCCGCCGCCAACGATATCACATTTTCGG
GCATTGGCTATTTCTGGATGTTATCAAATTGTGTGTGCTGCGCGGGATAC
GTCCTGTACATGAAGCACGCCACTAAGACGGTGCGCCTGCCAAAGTTTGC
CATGGTCTTCTACAACAATCTCTTGTCTCTGCCTATTTTGCTGGCGGGGG
CAGCGGTCCGAGGGGAATATACGACATTTCTCTGGAGCGAAGACCTGCAC
ACAGCAGCCTACGTGAGCCTATCTCTGTATGCAGGCTTGGTGGGGTTCGC
CCTGAATTTGGCCACATTGTGGTGCGTATCCAACAACTCGGCCACCACCT
ATTCCGTGGTAGGAGCCATGAACAAAATTCCACTCGCGGTCGTCGGATGG
CTGCTTTTCAGGACGCCAATAACGCAAAAGGCCTTGATCTTTCTCTCCTT
GAGTATGTGCGGGGGATTTTTGTATACCTACACGAAGCTTCGAGAGGCGA
ACCAGGCGGCCGGCCTGCCGAGGTGA

Synonyms

Publications