rna2309, rna2309 (mRNA) Nannochloropsis gaditana

Overview
Namerna2309
Unique Namerna2309
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1706
Alignment locationCM002459.1:80558..81121 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100616g1.10675.mrna
Orig protein idgnl|cribi|Naga_100616g1.10675
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:80558..81121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100616g1gene2204Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28372.1cds2301Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2309rna2309-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2309 ID=rna2309|Name=rna2309|organism=Nannochloropsis gaditana|type=mRNA|length=1706bp
TTTTCAAGGAAACATGTCAGATAAAGCTTAACATGTCAGATAAAGCTTGT
AGACGACAGTAAAATAATGACACTCGTATGGTGCTACTTATTCCAGGACT
CACTGTCTCTGCTTTGTTATTTGCCTCCCTTTCAGCCGGACCAACAAGCA
AGCTGAAGACGCATATTTTGCCTACATTTCCCACTCCGCCTACTACGCAT
GGCCACCCAAGTGAATACCACACAGGACAGCGAAAACTCAACAGTGATAA
CAGACGAGCAGGCATGGCAATATTTTTCCCCTTTCCTGACCGTAGGCCTT
GTAAAAGCGCACGAATTGCACGCCCTGCTCAAAGCTCCTCTCCGGCAACG
CGGTGAACGCTTACAGCTGCTTTTCGACGAGACAATCCAGAAGCGAGAAG
CAATGCGGCGGATTTGTGCAGAATGTGGGAGACGAGAGGGGGACAAAGGC
GTAGACAAGTTGAAGGTGTGTGGGAAATGCGCTAACATATGGTATTGTAG
TCGGGACTGCCAGCTCGCAAATTTCCATTCGGGCGAGCATAAGAAGGCGT
GCACTTCTCTAAAAATCGCCCGAATCTGTCGCGAAAATCAAATGAAGCGT
GCGGAAATGAAAGAGGATTGGATCCGAACCTATCTGATGGGTTTGGAGGG
ACATACGAAGATACAGTGGCCAGAGGGCCAGATTCCTGAGGGCTGGTCGG
AGTTTTTCGCGGCGCGGCAACTCGGTCACCAGGTCAGTGCCAACAGCAAC
AGCGGTATGTGCCTGAGCGAGCTGTTGCACGAAGGGTTGACGGTGGCCAT
GGCGGCGAAAAGGTTCGGGCTTTTGGGTGGGAGGGGAGGTAGAGAGGGTC
ATGGTGGGGACCACGGACGCCATCGACGGCCTTTTCGCTTGCACATCCTG
GGGGCGACGGAGACGCAGGAGATCCAACGCTTGCCCCTGTCGATGGGGGA
GCTTGGGGCCTTGCTCTGTCCCTTCTATTTTGAGGGCTTGGAAGTGTCGG
TCTTTGGGCCCCAGGTCATGACCCCGACGGCGTTCCGGGTATCCTTGGCG
GAGGGCAAGGAGACAGCCAGGGACATCACGGTGTGGAAGAGCAACCTCCT
TTACCACAACTGGGTCCTATCTCACGAGGGAAGCAAAGAGGCGCCACCGG
ACCTGGTGGTTGCGTTGAACAGCGGACTGCATACTGGCGACGATCATCAC
CACGTGGACGGCTCCATGTGGCTACCCACCCTTACTTACCTGGTCGCGTC
CGGGATCCCATTTCTGCTTACCATGTACGACGCGGAGGAAGGGAGGAAGA
CCCTGGAGATGCTGGAGTCGTTCGACGCGTGCGTTGCATGGGGCCCCGAC
TTGAACCCCATGCGGTCGCTGGTCTTGGAGGAAACGGAGGCACCGGCCTT
GCAACGGTACGCCCGCCTGGTCGCGGATGGGCGCATGGACGCCGGGGCCG
ACGAGCCGGACGGTCCATTGCCACCCTTGGAATTGACGTTGTGTAATCGA
ACCACGGGGGACTCCAGGTATTGGGTTGGGGTTAAAGGCACCCGCGGATA
GGGTGAGAAGGAGGTATGGTTGGATGGGAAATGGAGGGGAGGAGCGGAAA
ATGTGGAGGCCATGGAGTTGAATCAGGAGGGGAAAGACCTTCTTGAAATG
AACCAGTAAACGCAAGACATATCATGAAAGTAAAATAATTGGGAGTGATA
CCTCTT
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protein sequence of rna2309

>rna2309-protein ID=rna2309-protein|Name=rna2309|organism=Nannochloropsis gaditana|type=polypeptide|length=128bp
FSSSSSFSSSSSSSGPSASKKEKEEHQGDCLHLPSDRSEKEWLCVDFAAV
ERTLDAAIRAKSEKTSRAASKTSPSRGLGFCAQPRSGGRYRGWGGSRGRS
GEEVCGEKEEDRMKAGRPEHGREEEEFN
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mRNA from alignment at CM002459.1:80558..81121-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2309 ID=rna2309|Name=rna2309|organism=Nannochloropsis gaditana|type=mRNA|length=564bp|location=Sequence derived from alignment at CM002459.1:80558..81121- (Nannochloropsis gaditana)
TTTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCTTCAGGCCCCTC
CGCCTCCAAGAAAGAGAAAGAAGAACACCAAGGGGACTGCTTGCACCTGC
CCTCGGACAGGTCCGAGAAGGAATGGCTCTGTGTCGATTTTGCCGCGGTC
GAACGGACACTGGATGCGGCGATACGTGCCAAATCTGAGAAGACGAGCAG
AGCTGCCAGCAAAACAAGCCCTTCAAGGGGATTGGGTTTCTGTGCACAAC
CGCGCTCAGGAGGGAGGTATAGGGGCTGGGGGGGAAGCAGGGGGAGGTCG
GGGGAGGAAGTTTGCGGTGAGAAGGAGGAAGACAGGATGAAGGCAGGAAG
ACCTGAACATGGGAGGGAGGAGGAAGAGTTCAATTAGATAGGATTAATTT
GGACGGGACTCGGACCTGTAAAGTAGACTTAGGTAGTGACAATGTAAAGC
AATACAGGCAAACAGTTGGCCAGACTCGATTATAAATTGGCATTTTAAAA
ACATACGTGTCCTGCGACATTTTCTTCCACTTTAGGTCGGAAAAACAATG
AGTATCAACAATGC
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Coding sequence (CDS) from alignment at CM002459.1:80558..81121-

>rna2309 ID=rna2309|Name=rna2309|organism=Nannochloropsis gaditana|type=CDS|length=387bp|location=Sequence derived from alignment at CM002459.1:80558..81121- (Nannochloropsis gaditana)
TTTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCTTCAGGCCCCTC
CGCCTCCAAGAAAGAGAAAGAAGAACACCAAGGGGACTGCTTGCACCTGC
CCTCGGACAGGTCCGAGAAGGAATGGCTCTGTGTCGATTTTGCCGCGGTC
GAACGGACACTGGATGCGGCGATACGTGCCAAATCTGAGAAGACGAGCAG
AGCTGCCAGCAAAACAAGCCCTTCAAGGGGATTGGGTTTCTGTGCACAAC
CGCGCTCAGGAGGGAGGTATAGGGGCTGGGGGGGAAGCAGGGGGAGGTCG
GGGGAGGAAGTTTGCGGTGAGAAGGAGGAAGACAGGATGAAGGCAGGAAG
ACCTGAACATGGGAGGGAGGAGGAAGAGTTCAATTAG
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Synonyms
Publications