rna2301, rna2301 (mRNA) Nannochloropsis gaditana

Overview
Namerna2301
Unique Namerna2301
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length237
Alignment locationCM002459.1:67934..68460 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101161g2.6793.mrna
Orig protein idgnl|cribi|Naga_101161g2.6793
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:67934..68460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101161g2gene2197Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2301rna2301-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28380.1cds2293Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2301 ID=rna2301|Name=rna2301|organism=Nannochloropsis gaditana|type=mRNA|length=237bp
ATGCCACGCTCCCCGACAAATTTGCTGCCTCGTGGCGTCAACTCCTACAG
TCTTGAGGCGATCAATACGGCGAAAAGCAATTCCTCGCCATCTCCCGCCA
CAAGTACCGAAAACATCTCCTCCCCTACCTCCCCTGCCGCCTCGCCTGCT
CCCTTCGCCCCAAAGAGCGGCCCTGTCGGGACATGCTTCCTCCACAGTGA
CCCTTTCCTCCCCCACTCCCTCCGCTCCTCACCCTGA
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protein sequence of rna2301

>rna2301-protein ID=rna2301-protein|Name=rna2301|organism=Nannochloropsis gaditana|type=polypeptide|length=115bp
MHTKLDAFGACVYLLYGLDLHRGLLMLSRIVFNQLYGKRSADRSDICLVE
PADGLFVSVCVCAGPKRATEMGKNGIVPPELHVESITFGRIYIPKKRAEV
SRLIRHFYIESVVYR
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mRNA from alignment at CM002459.1:67934..68460+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2301 ID=rna2301|Name=rna2301|organism=Nannochloropsis gaditana|type=mRNA|length=527bp|location=Sequence derived from alignment at CM002459.1:67934..68460+ (Nannochloropsis gaditana)
ATTTAATGTTTACACTCGCTGGAATTATTCGTCTCGGGTAATTGTTGATC
TCCAGGTGGGGGCTGGGAAAGCGTCCTTTGTCGATAACATGTGCCAATAA
TTTTTGCCCGAAGAGATGCACACCAAGCTTGATGCATTTGGCGCATGTGT
ATATTTGTTGTATGGTCTGGATCTCCATCGCGGGCTTTTGATGCTTTCTA
GGATTGTGTTTAACCAACTTTACGGGAAAAGGTCAGCAGATCGATCCGAT
ATCTGCCTTGTCGAGCCAGCGGACGGTCTTTTCGTCTCCGTTTGCGTCTG
TGCGGGTCCAAAAAGGGCGACAGAAATGGGAAAGAACGGAATAGTGCCAC
CAGAACTGCATGTGGAATCTATTACATTCGGTAGGATCTATATTCCAAAG
AAGAGGGCTGAAGTCTCGAGATTGATCCGTCATTTTTACATCGAGAGTGT
AGTTTACCGGTGAGACTTTTGCAACCCCTCGTTTGCTTTAACCATCGGGC
ATCATTAACAAAACAGAACAGAAGAAC
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Coding sequence (CDS) from alignment at CM002459.1:67934..68460+

>rna2301 ID=rna2301|Name=rna2301|organism=Nannochloropsis gaditana|type=CDS|length=348bp|location=Sequence derived from alignment at CM002459.1:67934..68460+ (Nannochloropsis gaditana)
ATGCACACCAAGCTTGATGCATTTGGCGCATGTGTATATTTGTTGTATGG
TCTGGATCTCCATCGCGGGCTTTTGATGCTTTCTAGGATTGTGTTTAACC
AACTTTACGGGAAAAGGTCAGCAGATCGATCCGATATCTGCCTTGTCGAG
CCAGCGGACGGTCTTTTCGTCTCCGTTTGCGTCTGTGCGGGTCCAAAAAG
GGCGACAGAAATGGGAAAGAACGGAATAGTGCCACCAGAACTGCATGTGG
AATCTATTACATTCGGTAGGATCTATATTCCAAAGAAGAGGGCTGAAGTC
TCGAGATTGATCCGTCATTTTTACATCGAGAGTGTAGTTTACCGGTGA
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Synonyms
Publications