rna2288, rna2288 (mRNA) Nannochloropsis gaditana

Overview
Namerna2288
Unique Namerna2288
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1413
Alignment locationCM002459.1:39788..40173 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100369g2.2407.mrna
Orig protein idgnl|cribi|Naga_100369g2.2407
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:39788..40173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100369g2gene2186Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2288rna2288-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28395.1cds2280Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2288 ID=rna2288|Name=rna2288|organism=Nannochloropsis gaditana|type=mRNA|length=1413bp
ATGCGACTGCAAACTCTCCCGGCAACGGTGCTTTTGACGGCCGCTGTACT
CGGTGTCACGGAATCCGTAGCTCAACAGTCTCTCCGTGGTATGACGGCGA
CACCGGCAAACAAGGCAGGAGGAAAATATAAACCATTCTTCTTGCCGTAT
TCCAATACCAGCGGCATCCCGCGCGTCGATGCAGACTACCACGATTCCCT
CAAGGCCACTTGGGAGGGCCTGAAAGCGCGCAATATCGACCCCTACGACA
TCAAGCTTGTGCACCGTCCGCGCTCCGAGACCCCCAACGACGCAGTGTCG
GAGGGTGTAGGCTACGGTCTGCTCCTCGCCTTGTACAGCAACGACCAAGA
GTATTTCAACATGCAGCTGGACAACGCGGAGCGATACATGTGGAACTGGC
GCAATTTCCACGACTGGCGCATCAATGAGCAAGGATCCATCCAGGGGACA
GGCGCGGCGACGGACGCGGAGGAAGACATCGCCTTGGCCTGCATTTTTGC
CCAGCACTTAGTGGACAAGGGTGTCTGGGAGCCGCACACCACCCCCAAGG
GCGCCTCCTATGGGAAACGAGCCCAAGAGATTCTGGACGCCATGTGGGAC
GTGGGCATGATCCAAGACGGGAAATTCCTGGCACCCGCTGCGGGCTGGGG
AGGGAGGGATTTTGTCAACCCTGGTTACTTTGCTCCTGCTTGGTACAAGA
TCTTCGCGGAGTTCGATGCCAACGCCGATCGCCACGACTGGAAGGCCGTC
GTCGACCAGTCCTACGAATCGATACTCGCCAATGTGGGAAGCGACAAAGG
TCTCATTCCCGACTGGATGACCCCCGCCGGCACCTTCTACTACCAGGGCC
TTGGCTACAACGCTTATTTGGACGGGCGGGGATTCTACAAAGATGCCATT
CGCACTCATTGGCGCCTGGCTACGGATGCGCTCTGGTTCAACGATGAGCG
CGCGAAAGAGTTCTTGGCCAAGGCTTATACCTTCCTCGAAGGAAAAGGAG
GGCCTAAGGAGGCGAACTTCTTTACGATGGAAGGCGAGCCGGTCCCTATG
ACCGATTTCTGGGACTTCGATAACAATCAACGCCGACGGCATCGATTCGA
GCACTCTCATTTGACCATGGGCATGTGGGCTACCACCGGATTCGTGGCTG
CGGGCCCGAAGGAGTCTAAGCCCTATTCCGACGAGCTCCTTTCCTTCTAC
GAAGGGGGAGACTACTGGGGCCACAAGATCGATCCCGCGGGAGGTACTGA
GGATATCGAACATAACGAGATGTATTTCGACCAATTTCTGGCTTGGTTCG
GAGCCTCCACCATCAGCGGACAAGAACACGATAAACAATTTAACAAACTT
ATGGAAATTCTAAAGTATGCGAAAAAGTACAATACATGTACTTGTAGAGG
CCCGGCTTGGTGA
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protein sequence of rna2288

>rna2288-protein ID=rna2288-protein|Name=rna2288|organism=Nannochloropsis gaditana|type=polypeptide|length=84bp
MKGTNGLSFNTTLRAPDAFLRQRRAQHKIRNTTGKSMNSTVGGRESTSQS
EDPVTTWTWCWHDKDSTGDPKEGKGLLFDVPARV
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mRNA from alignment at CM002459.1:39788..40173-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2288 ID=rna2288|Name=rna2288|organism=Nannochloropsis gaditana|type=mRNA|length=386bp|location=Sequence derived from alignment at CM002459.1:39788..40173- (Nannochloropsis gaditana)
ATGAAGGGAACGAACGGATTGAGCTTCAACAGTGTTTAAAACGGGAAGTG
GATCTTGTCTGGGGTGTCGGTCTCGAGTCAAGTATGAGCAACGCTTCGAG
CGCCGGATGCATTCTTAAGACAACGAAGAGCACAGCACAAGATTAGAAAC
ACCACGGGGAAAAGCATGAATTCCACCGTCGGCGGACGTGAAAGCACATC
GCAATCGGAAGTAAGAAGGCAGTAGTCTTTTCAGAGAGGGTCGATGTCAA
TAGCACAGACCAGTGATCGAAACAAGTGCGTAAGGATCCTGTAACAACAT
GGACGTGGTGTTGGCATGACAAGGACAGTACAGGAGATCCCAAAGAAGGG
AAAGGGCTTTTATTCGATGTTCCAGCACGTGTGTAA
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Coding sequence (CDS) from alignment at CM002459.1:39788..40173-

>rna2288 ID=rna2288|Name=rna2288|organism=Nannochloropsis gaditana|type=CDS|length=765bp|location=Sequence derived from alignment at CM002459.1:39788..40173- (Nannochloropsis gaditana)
GATCCTGTAACAACATGGACGTGGTGTTGGCATGACAAGGACAGTACAGG
AGATCCCAAAGAAGGGAAAGGGCTTTTATTCGATGTTCCAGCACGTGTGT
AACAACGCTTCGAGCGCCGGATGCATTCTTAAGACAACGAAGAGCACAGC
ACAAGATTAGAAACACCACGGGGAAAAGCATGAATTCCACCGTCGGCGGA
CGTGAAAGCACATCGCAATCGGAAATGAAGGGAACGAACGGATTGAGCTT
CAACAGATCCTGTAACAACATGGACGTGGTGTTGGCATGACAAGGACAGT
ACAGGAGATCCCAAAGAAGGGAAAGGGCTTTTATTCGATGTTCCAGCACG
TGTGTAACAACGCTTCGAGCGCCGGATGCATTCTTAAGACAACGAAGAGC
ACAGCACAAGATTAGAAACACCACGGGGAAAAGCATGAATTCCACCGTCG
GCGGACGTGAAAGCACATCGCAATCGGAAATGAAGGGAACGAACGGATTG
AGCTTCAACAGATCCTGTAACAACATGGACGTGGTGTTGGCATGACAAGG
ACAGTACAGGAGATCCCAAAGAAGGGAAAGGGCTTTTATTCGATGTTCCA
GCACGTGTGTAACAACGCTTCGAGCGCCGGATGCATTCTTAAGACAACGA
AGAGCACAGCACAAGATTAGAAACACCACGGGGAAAAGCATGAATTCCAC
CGTCGGCGGACGTGAAAGCACATCGCAATCGGAAATGAAGGGAACGAACG
GATTGAGCTTCAACA
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Synonyms
Publications