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Properties
| Property Name | Value |
|---|
| Product | DNA-directed RNA polymerase III, subunit Rpc31 |
| Orig transcript id | gnl|cribi|Naga_100206g5.1435.mrna |
| Orig protein id | gnl|cribi|Naga_100206g5.1435 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:7326..8912 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2280 ID=rna2280|Name=rna2280|organism=Nannochloropsis gaditana|type=mRNA|length=1130bp
ATGTCGGGACGTCGCCGGATTGCTGAGCTGGAGGGGGAGCGGGCGCGCCT
AGAGAACGAGAAAGGGAGCGCTGAGGCCAGGGTGGTGGAATTGAGTGCGC
TGATTTCCCGGCTGGAGGATGACCTGGCGCGTGTGGCCAGCAAGGGGGTC
GGGGACGTTATGGCCGAGGGGACGGTCGGCTCACAATCGCGGACGCCCTC
AGTCCCCCCCGGCCGGGGACCGTCCTGGAAGGTGGCGTCCTCCCGGGACG
AGGAAGATCTAGACGTTGATATGCACGAGCTCTTGGCCTCGACGACACAG
CCCGCGCCCGCCCTTGGCGCGTCCCCCTCGGCCTCCCTCGACCTGGTCCG
GATCCTCCAAGCCCAGCGCGACAGGTACAAGGCGCGAACCCGCGAGCTCG
AGGGCCGACTGGCGGCCGTGGAGCAAGAGTCGGGTCGACACAAGGCACAG
GCGGAGTCGATGCTGCGCGACAATCTTAAGCTCTACGAGAAGGTCCGCTT
TCTGCAGAGCTATAAGAAGGGGAGGGTCGGTCCAGACGCACTCGACAGTA
CTCAAGATAAGAGGATGTCCGGGTTAGAACACTCGACGCTCCATCAACGG
AATGTCGTCAACGACGAGGGGAAAGGGGCTCAAGAATACGCGCTGGAAGC
GGGCCGAGTGCCGACTGGCGCAGGGGCTGCCGCAACAGAAGCTCGTTATC
GCGCCATGTACGAAGAGCAAATGAACCCTTTTACCGCCTTTTCAGTTGCA
GAGCGCGTCCGTAAGTATCAAGACTTGAGCGTAATCGACAAAATAACGCT
CCAGACAACACGGGCGTTTCTTGCCCACAAAAAAGCGCGGATGGCGGTCT
TCTTTTACGCGGTGAGTCTGCACCTGCTGGTCTTCCTGACTCTGTACATG
TGGGGGCATCACCACTGCACTGACCTGCATTATCAAGCAGACGTGCTCAT
GGGCCACCCACCCGAGCCGTTAGGGATGCAATCATTGTCAATGGGGAATC
ATGCGGTAGGAGGAGGAGCCAATCATTTGGAAGGCTAAATGAGAATATGG
CTGATCAGTAACCAAAGAACAAATAAGCGTCGTCTCTTTACTGCACTCCG
CTCTATAGAAATAAATCTTCACGGTGAGCA back to topprotein sequence of rna2280 >rna2280-protein ID=rna2280-protein|Name=rna2280|organism=Nannochloropsis gaditana|type=polypeptide|length=185bp
MMGRGRGRGGRFGGRGGVPGGGGLTALDHLRDTAEEMGLDPRAASGSTQQ
EPLPSYPYIPIYPPRPLTEDEGIKIQAQRELVHWWQHSVYYLQPAARAAT
VTKEITRYSDRYRGTLENDGSRGPEAEKDGVKRSRRASLWEVIHVPEPKV
RVQGPMGMAVTLFGRVLCEWLMVTQGRFFAEREGL back to topmRNA from alignment at CM002459.1:7326..8912+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2280 ID=rna2280|Name=rna2280|organism=Nannochloropsis gaditana|type=mRNA|length=1587bp|location=Sequence derived from alignment at CM002459.1:7326..8912+ (Nannochloropsis gaditana)
GACTACCTCCTCACATCTCTGGTCCGCTTTTCACGTAGTTTTTGTGCTCA
TTTCAAGGAAAGTAGCGTAATATCTACCTTGAGGAGCGAtgatggggcgg
gggcggggccgcggTGGACGttttggaggacggggcggagtGCCCGGCGG
TGGAGGTCTCACAGCGCTCGACCATCTGCGAGACACAgcagaggagatgg
ggcTAGATCCTCGCGCCGCTTCCGGCTCTACGCAACAGGAACCGCTGCCT
TCCTACCCATATATTCCTATATATCCGCCCAGGCCGTTGacggaggatga
gggaataAAAATTCAGGCGCAAAGAGAGTTAGGTACGTGGGAGATGGtag
tggagaggggaggtctTATACCAAGTAGCATGCCAAGTACTCTTCGTTCA
ATGATTTACGGATATGGAACTGCACAAGTCCTACATATGATACCATGTGT
CCAAACTTTTGTGTCATTATCCACCTTCATCTCTCCCATTTCAGTGCACT
GGTGGCAACATTCGGTTTATTACCTTCAACCCGCTGCACGCGCTGCAACT
GTAACGAAGGAGATAACTCGCTACTCAGATAGATATAGAGGAACTCTTGA
AAACGATGGAAGCAGAGGgccggaggcagagaaggacgGCGTGAAACGAA
GTAGACGTGCGTCACTGTGGGAGGTCATCCACGTGCCGGAGCCCAAGGTC
CGTGTGCAAGGGCCCATGGGAATGGCGGTGACTTTATTCGGTCGCGTACT
TTGCGAGTGGCTAATGGTCACACAAGGAAGATTCTTTGCCGAGAGAGAAG
GACTTTGATGGAGCAtttctgtctccttcccgtcgccTAAGCCAAGGAAA
TCTCAGCCTGAACTTACTAGTGTCGCATATCTCTTGTTTATCCTGTCACT
TGTCTTACAGAGCGATAGTGCGGTCTACATTCCATTTGAGCTCTACCCTC
GTGCAAAATCCTCAATCCCCCgcagaagggagaaagcatTGACAAAAACT
GGCTTTCGAAATAGAGGCAAGGGGGccgcggcgacggcgaccATGGCAAA
AGTACGTGTCTGGGAAAGGGACTAACAAATTACCATTCACATATTTGATT
CAAACTTATTTTATTTGTCTGCCATAATCCATAGGAGCCTAGGTGCCGGG
TGAtattggaggacgaggaagaagaagcagtaggggaaggagaggaggaa
gaagaagtaaGTGGTACGAAGAAATGGAAGCGAAAGCTCACTCAAGATGA
GCTCGGTGAAAAGGACCCTGTCTCTGGCAACAATCTGaggagcaagaaaa
gggacgaagacgaagaagatgaggaggaggaggaggaggagggtttggtc
gaggaggaagaggaggaggaggttgacgaggatgatgacTATGCCATGAA
TCACTACGCGAGCGATGGCTACGACGGGATGGATGACGGCgacgaaggag
gtggtgacaACGAGGCAATCTTTTAAAAGAAATTTGAGATGATCACGTGC
ATGTAGAAGATGGCGGAAAGAAAAATTGAGGCGCATTTCCCTCATTGATA
AGTGATTCTTCCTTTGCATGATTTGAGTGTCGTTCCA back to topCoding sequence (CDS) from alignment at CM002459.1:7326..8912+ >rna2280 ID=rna2280|Name=rna2280|organism=Nannochloropsis gaditana|type=CDS|length=1116bp|location=Sequence derived from alignment at CM002459.1:7326..8912+ (Nannochloropsis gaditana)
AtgatggggcgggggcggggccgcggTGGACGttttggaggacggggcgg
agtGCCCGGCGGTGGAGGTCTCACAGCGCTCGACCATCTGCGAGACACAg
cagaggagatggggcTAGATCCTCGCGCCGCTTCCGGCTCTACGCAACAG
GAACCGCTGCCTTCCTACCCATATATTCCTATATATCCGCCCAGGCCGTT
GacggaggatgagggaataAAAATTCAGGCGCAAAGAGAGTTAGTGCACT
GGTGGCAACATTCGGTTTATTACCTTCAACCCGCTGCACGCGCTGCAACT
GTAACGAAGGAGATAACTCGCTACTCAGATAGATATAGAGGAACTCTTGA
AAACGATGGAAGCAGAGGgccggaggcagagaaggacgGCGTGAAACGAA
GTAGACGTGCGTCACTGTGGGAGGTCATCCACGTGCCGGAGCCCAAGGTC
CGTGTGCAAGGGCCCATGGGAATGGCGGTGACTTTATTCGGTCGCGTACT
TTGCGAGTGGCTAATGGTCACACAAGGAAGATTCTTTGCCGAGAGAGAAG
GACTTTGAAtgatggggcgggggcggggccgcggTGGACGttttggagga
cggggcggagtGCCCGGCGGTGGAGGTCTCACAGCGCTCGACCATCTGCG
AGACACAgcagaggagatggggcTAGATCCTCGCGCCGCTTCCGGCTCTA
CGCAACAGGAACCGCTGCCTTCCTACCCATATATTCCTATATATCCGCCC
AGGCCGTTGacggaggatgagggaataAAAATTCAGGCGCAAAGAGAGTT
AGTGCACTGGTGGCAACATTCGGTTTATTACCTTCAACCCGCTGCACGCG
CTGCAACTGTAACGAAGGAGATAACTCGCTACTCAGATAGATATAGAGGA
ACTCTTGAAAACGATGGAAGCAGAGGgccggaggcagagaaggacgGCGT
GAAACGAAGTAGACGTGCGTCACTGTGGGAGGTCATCCACGTGCCGGAGC
CCAAGGTCCGTGTGCAAGGGCCCATGGGAATGGCGGTGACTTTATTCGGT
CGCGTACTTTGCGAGTGGCTAATGGTCACACAAGGAAGATTCTTTGCCGA
GAGAGAAGGACTTTGA back to top
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