|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100088g9.1229.mrna |
| Orig protein id | gnl|cribi|Naga_100088g9.1229 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:1342903..1345559 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2270 ID=rna2270|Name=rna2270|organism=Nannochloropsis gaditana|type=mRNA|length=2221bp
ATCACGTCTCAATTTCTAAATACAATTTGTTTACTTGGTAAGCTTGACAT
GCGTTATCAAATCACGAAGGCGCAGGCACATGCCGACATGTTTTATGCGT
CCTAGGACCCGGTTCCCACTGAAAACATTTTCTTGCCCAGTTTTATTTCC
CTACTCAATACACGGAAAGCCGAAGTAGCTTTTTGGGACAGCATACCAGT
TTGAAACAAATGGGCAAGAATATATTTCATGCGATGTTTCCCTTGTTGAC
ACCCACACGTTCCCTATTAAGCAGTTGGGCACTGTCGCTGATCCCAAATA
ATGCGTTCCCTATATAAATTTGTCACTAACGATCTCTTGATACATTTCAC
TCAGACAAATTCGAGACATTCGTCGGACTGTAAAGTTTTCTACGGGGTTG
CCTTCTTCCTGTCGTCCTTTCCAAAATCTTACCTTGGTCAGTGTTTTTTG
TGGACACGTCGCGTCGGCGTAATAGCTCTTCACTGATTAACCAAAAGGCG
ACAAGATACCGTTCCGATGGACAGCTCAAAAACTTCTGATACTCCTTCCT
TTCTATTTTCCTTCCTGCTGAGTGCAGAAAACGCCTCTAAAGCTTTTTTG
CTGTGGTGTTCCTTAGAGGTCCTGTTTTATTTCGTCATAAACCGTCTAAT
ATATCCACGCATAAAGCAGCTGCGGGCCGCTCCTTCTCATCCCCCGGAAA
AATCTCCTCTCGAATGTCTTGCTCGATTGACAGACGCGCTACACCGCTTA
CGAGGAGTCTATAGCCCTGAATCATTCTGGTCAGGATGGTTCAAGGGAGC
GATGCATGAGAATATCCGGCGAAATAATGTAAAAGAGTTTCTGTGCTGGG
CGATTTGGCACGTGAAGTCCTCCGAGGAGTTGGCGAAATCGGATGTGCTA
GCTTTGGAAAAGACAGTTGTACTAATGGAGCGACTACAAGGAAAATCTTT
CCCGGCTGGCCATAATCCAGAGGTTGAACATGTTGCCTTTACCCGTGAGC
CTCTCTACTTTGCCCATCGCTTGCTCATTTTCTACGTGGTCGTCAAATGT
GCTCAGCTCATGGGGCACGGCTTTCTGCTCTTGACGGGGCATCGGCGGTA
TGTAACACCTACTCACAACCTAACTTACTGGCATCGGCCTTGCCAGCAAG
AGGAGGGGTCAATTAAGCAACCGCCCCTTCTCTTCTTTCACGGTATCAGC
CCAGGCATATGGTTCTACATTCCCTTTCTCACGCGGTTGGGTAGAGGCCG
GGAAATCATCTTGCTGGAAGTCCCCCACATAGTCACGCAGCTGTCGTTTG
AAGCCCCTGACCGGATTGAAACCGTGCAGTCCCTTGCAGAGGTCCTTGCT
CTGCATTCCATCTCGAAATGCGCCGTCGCCGGCCATTCTTTCGGCTCCAT
CATCGCTGGATGGGCCGCCACCGCCTTTCCCCAACACGTCAAGCAGTTGG
TACTCATCGACCCAGTCTGTCTCCTCCTCTGCCTTCCTGACGTGGCAGTC
AATTTTCTGTATCGGTCCCCCCCCACGAATCTCTTTCACCGGACACTGAA
AGACTTTATTGATCCTTCCAGCGAGATCACGGTCTCCCATGCCTTGAGGC
GGCATTTCTGGTGGTATCAGAATATATGCTGGCTGCAGGATGTGTCATGT
CCCCTAGTCGTGGCTCTTTCATCCGAGGATGACATTGTTCCTTCCACTGC
CATCCACTATTATGTGCAGCGGCATTACAGAATGCAAGAAGCGGTCAAAC
ATGAAAAGGAGGACGATGCTGGTGAGATGACGGACCAGAGTAACGCAAGC
GGGAGTGGACGCCTGATATATTGGAGGGGCATTGGGCATGGACAAATGCT
GGTGTCATTAAAAGCGCAGGACAGATTAATCGCAGCCATTTGTAAGCAGG
CTATGGAGTCGGGGTTGGCGACAAGAGCCGAAGACATCAAGAATAGCGGA
CAAAAGAGTGTGAGGAGGAGAAGGGTGACCGCAGCGTAGTTTCTCTTAGC
TGGATGTGCATGTCCAATTTGTATAAAAAAGAGCCTTGCAAGGAAGGAGA
AATAAACCCCAAAAGATGCTCTCGCTATTCTGGTAGTTGGGCCTTTGGTG
AAGAAAGGTTGTTCCACCAACTTGACTCTCGATGAAATGAAAGCCTATGC
ATGTTAATAATGAAAAATTGGAGCAAATTCATGTCTACGACCACGAAAAA
GTAAATAACCTTAAGATGCAC back to topprotein sequence of rna2270 >rna2270-protein ID=rna2270-protein|Name=rna2270|organism=Nannochloropsis gaditana|type=polypeptide|length=490bp
MDSSKTSDTPSFLFSFLLSAENASKAFLLWCSLEVLFYFVINRLIYPRIK
QLRAAPSHPPEKSPLECLARLTDALHRLRGVYSPESFWSGWFKGAMHENI
RRNNVKEFLCWAIWHVKSSEELAKSDVLALEKTVVLMERLQGKSFPAGHN
PEVEHVAFTREPLYFAHRLLIFYVVVKCAQLMGHGFLLLTGHRRYVTPTH
NLTYWHRPCQQEEGSIKQPPLLFFHGISPGIWFYIPFLTRLGRGREIILL
EVPHIVTQLSFEAPDRIETVQSLAEVLALHSISKCAVAGHSFGSIIAGWA
ATAFPQHVKQLVLIDPVCLLLCLPDVAVNFLYRSPPTNLFHRTLKDFIDP
SSEITVSHALRRHFWWYQNICWLQDVSCPLVVALSSEDDIVPSTAIHYYV
QRHYRMQEAVKHEKEDDAGEMTDQSNASGSGRLIYWRGIGHGQMLVSLKA
QDRLIAAICKQAMESGLATRAEDIKNSGQKSVRRRRVTAA back to topmRNA from alignment at CM002458.1:1342903..1345559- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2270 ID=rna2270|Name=rna2270|organism=Nannochloropsis gaditana|type=mRNA|length=2657bp|location=Sequence derived from alignment at CM002458.1:1342903..1345559- (Nannochloropsis gaditana)
ATCACGTCTCAATTTCTAAATACAATTTGTTTACTTGGTAAGCTTGACAT
GCGTTATCAAATCACGAAGGCGCAGGCACATGCCGACATGTTTTATGCGT
CCTAGGACCCGGTTCCCACTGAAAACATTTTCTTGCCCAGTTTTATTTCC
CTACTCAATACACGGAAAGCCGAAGTAGCTTTTTGGGACAGCATACCAGT
TTGAAACAAATGGGCAAGAATATATTTCATGCGATGTTTCCCTTGTTGAC
ACCCACACGTTCCCTATTAAGCAGTTGGGCACTGTCGCTGATCCCAAATA
ATGCGTTCCCTATATAAATTTGTCACTAACGATCTCTTGATACATTTCAC
TCAGACAAATTCGAGACATTCGTCGGACTGTAAAGTTTTCTACGGGGTTG
CCTTCTTCCTGTCGTCCTTTCCAAAATCTTACCTTGGTCAGTGTTTTTTG
TGGACACGTCGCGTCGGCGTAATAGCTCTTCGTAAGTACTATCTAAATTA
GACGTGCGTGACGACTTTTAGATATCTCTATATGGCATGTACTGCTGTCT
GTCCAATGTAATACGTAAAAAAGTGCGTTTACTATAGTTTTTAAATATTA
TACGAAGTCTTCCTAGAGCAATTAAAAACATCTTTTTGGTGAATCATAAG
GAATATAAGCGATACTAGCTCCACTACTTTTAAGAATATCTCTTTATTCA
ATCATCACACAGACTGATTAACCAAAAGGCGACAAGATACCGTTCCGATG
GACAGCTCAAAAACTTCTGATACTCCTTCCTTTCTATTTTCCTTCCTGCT
GAGTGCAGAAAACGCCTCTAAAGCTTTTTTGCTGTGGTGTTCCTTAGAGG
TCCTGTTTTATTTCGTCATAAACCGTCTAATATATCCACGCATAAAGCAG
CTGCGGGCCGCTCCTTCTCATCCCCCGGAAAAATCTCCTCTCGAATGTCT
TGCTCGATTGACAGACGCGCTACACCGCTTACGAGGAGTCTATAGCCCTG
AATCATTCTGGTCAGGATGGTTCAAGGGAGCGATGCATGAGAATATCCGG
CGAAATAATGTAAAAGAGTTTCTGTGCTGGGCGATTTGGCACGTGAAGTC
CTCCGAGGAGTTGGCGAAATCGGATGTGCTAGCTTTGGAAAAGACAGTTG
TACTAATGGAGCGACTACAAGGAAAATCTTTCCCGGCTGGCCATAATCCA
GAGGTTGAACATGTTGCCTTTACCCGTGAGCCTCTCTACTTTGCCCATCG
CTTGCTCATTTTCTACGTGGTCGTCAAATGTGCTCAGCTCATGGGGCACG
GCTTTCTGCTCTTGACGGGGCATCGGCGGTATGTAACACCTACTCACAAC
CTAACTTACTGGCATCGGCCTTGCCAGCAAGAGGAGGGGTCAATTAAGCA
ACCGCCCCTTCTCTTCTTTCACGGTATCAGCCCAGGTAGGCCTGCTTGGT
AGTCGTGTAGCGCAATCGATGAAAGTTGTTCCTCACATTTTCTTGCTTGT
GTACAGTAGGCACAGTCCATTTAGTATAAAAATTTTAGACGGGAACTTTA
TTTTCTACCGCTATCTCGATGGTTGTCAGAGAGGCCGTTCGAACCTTCGC
ATTAATTTCCCTCCAACAACGCATTTTCGCTCCATTACAGGCATATGGTT
CTACATTCCCTTTCTCACGCGGTTGGGTAGAGGCCGGGAAATCATCTTGC
TGGAAGTCCCCCACATAGTCACGCAGCTGTCGTTTGAAGCCCCTGACCGG
ATTGAAACCGTGCAGTCCCTTGCAGAGGTCCTTGCTCTGCATTCCATCTC
GAAATGCGCCGTCGCCGGCCATTCTTTCGGCTCCATCATCGCTGGATGGG
CCGCCACCGCCTTTCCCCAACACGTCAAGCAGTTGGTACTCATCGACCCA
GTCTGTCTCCTCCTCTGCCTTCCTGACGTGGCAGTCAATTTTCTGTATCG
GTCCCCCCCCACGAATCTCTTTCACCGGACACTGAAAGACTTTATTGATC
CTTCCAGCGAGATCACGGTCTCCCATGCCTTGAGGCGGCATTTCTGGTGG
TATCAGAATATATGCTGGCTGCAGGATGTGTCATGTCCCCTAGTCGTGGC
TCTTTCATCCGAGGATGACATTGTTCCTTCCACTGCCATCCACTATTATG
TGCAGCGGCATTACAGAATGCAAGAAGCGGTCAAACATGAAAAGGAGGAC
GATGCTGGTGAGATGACGGACCAGAGTAACGCAAGCGGGAGTGGACGCCT
GATATATTGGAGGGGCATTGGGCATGGACAAATGCTGGTGTCATTAAAAG
CGCAGGACAGATTAATCGCAGCCATTTGTAAGCAGGCTATGGAGTCGGGG
TTGGCGACAAGAGCCGAAGACATCAAGAATAGCGGACAAAAGAGTGTGAG
GAGGAGAAGGGTGACCGCAGCGTAGTTTCTCTTAGCTGGATGTGCATGTC
CAATTTGTATAAAAAAGAGCCTTGCAAGGAAGGAGAAATAAACCCCAAAA
GATGCTCTCGCTATTCTGGTAGTTGGGCCTTTGGTGAAGAAAGGTTGTTC
CACCAACTTGACTCTCGATGAAATGAAAGCCTATGCATGTTAATAATGAA
AAATTGGAGCAAATTCATGTCTACGACCACGAAAAAGTAAATAACCTTAA
GATGCAC back to topCoding sequence (CDS) from alignment at CM002458.1:1342903..1345559- >rna2270 ID=rna2270|Name=rna2270|organism=Nannochloropsis gaditana|type=CDS|length=2946bp|location=Sequence derived from alignment at CM002458.1:1342903..1345559- (Nannochloropsis gaditana)
GCATATGGTTCTACATTCCCTTTCTCACGCGGTTGGGTAGAGGCCGGGAA
ATCATCTTGCTGGAAGTCCCCCACATAGTCACGCAGCTGTCGTTTGAAGC
CCCTGACCGGATTGAAACCGTGCAGTCCCTTGCAGAGGTCCTTGCTCTGC
ATTCCATCTCGAAATGCGCCGTCGCCGGCCATTCTTTCGGCTCCATCATC
GCTGGATGGGCCGCCACCGCCTTTCCCCAACACGTCAAGCAGTTGGTACT
CATCGACCCAGTCTGTCTCCTCCTCTGCCTTCCTGACGTGGCAGTCAATT
TTCTGTATCGGTCCCCCCCCACGAATCTCTTTCACCGGACACTGAAAGAC
TTTATTGATCCTTCCAGCGAGATCACGGTCTCCCATGCCTTGAGGCGGCA
TTTCTGGTGGTATCAGAATATATGCTGGCTGCAGGATGTGTCATGTCCCC
TAGTCGTGGCTCTTTCATCCGAGGATGACATTGTTCCTTCCACTGCCATC
CACTATTATGTGCAGCGGCATTACAGAATGCAAGAAGCGGTCAAACATGA
AAAGGAGGACGATGCTGGTGAGATGACGGACCAGAGTAACGCAAGCGGGA
GTGGACGCCTGATATATTGGAGGGGCATTGGGCATGGACAAATGCTGGTG
TCATTAAAAGCGCAGGACAGATTAATCGCAGCCATTTGTAAGCAGGCTAT
GGAGTCGGGGTTGGCGACAAGAGCCGAAGACATCAAGAATAGCGGACAAA
AGAGTGTGAGGAGGAGAAGGGTGACCGCAGCGTAGATGGACAGCTCAAAA
ACTTCTGATACTCCTTCCTTTCTATTTTCCTTCCTGCTGAGTGCAGAAAA
CGCCTCTAAAGCTTTTTTGCTGTGGTGTTCCTTAGAGGTCCTGTTTTATT
TCGTCATAAACCGTCTAATATATCCACGCATAAAGCAGCTGCGGGCCGCT
CCTTCTCATCCCCCGGAAAAATCTCCTCTCGAATGTCTTGCTCGATTGAC
AGACGCGCTACACCGCTTACGAGGAGTCTATAGCCCTGAATCATTCTGGT
CAGGATGGTTCAAGGGAGCGATGCATGAGAATATCCGGCGAAATAATGTA
AAAGAGTTTCTGTGCTGGGCGATTTGGCACGTGAAGTCCTCCGAGGAGTT
GGCGAAATCGGATGTGCTAGCTTTGGAAAAGACAGTTGTACTAATGGAGC
GACTACAAGGAAAATCTTTCCCGGCTGGCCATAATCCAGAGGTTGAACAT
GTTGCCTTTACCCGTGAGCCTCTCTACTTTGCCCATCGCTTGCTCATTTT
CTACGTGGTCGTCAAATGTGCTCAGCTCATGGGGCACGGCTTTCTGCTCT
TGACGGGGCATCGGCGGTATGTAACACCTACTCACAACCTAACTTACTGG
CATCGGCCTTGCCAGCAAGAGGAGGGGTCAATTAAGCAACCGCCCCTTCT
CTTCTTTCACGGTATCAGCCCAGGCATATGGTTCTACATTCCCTTTCTCA
CGCGGTTGGGTAGAGGCCGGGAAATCATCTTGCTGGAAGTCCCCCACATA
GTCACGCAGCTGTCGTTTGAAGCCCCTGACCGGATTGAAACCGTGCAGTC
CCTTGCAGAGGTCCTTGCTCTGCATTCCATCTCGAAATGCGCCGTCGCCG
GCCATTCTTTCGGCTCCATCATCGCTGGATGGGCCGCCACCGCCTTTCCC
CAACACGTCAAGCAGTTGGTACTCATCGACCCAGTCTGTCTCCTCCTCTG
CCTTCCTGACGTGGCAGTCAATTTTCTGTATCGGTCCCCCCCCACGAATC
TCTTTCACCGGACACTGAAAGACTTTATTGATCCTTCCAGCGAGATCACG
GTCTCCCATGCCTTGAGGCGGCATTTCTGGTGGTATCAGAATATATGCTG
GCTGCAGGATGTGTCATGTCCCCTAGTCGTGGCTCTTTCATCCGAGGATG
ACATTGTTCCTTCCACTGCCATCCACTATTATGTGCAGCGGCATTACAGA
ATGCAAGAAGCGGTCAAACATGAAAAGGAGGACGATGCTGGTGAGATGAC
GGACCAGAGTAACGCAAGCGGGAGTGGACGCCTGATATATTGGAGGGGCA
TTGGGCATGGACAAATGCTGGTGTCATTAAAAGCGCAGGACAGATTAATC
GCAGCCATTTGTAAGCAGGCTATGGAGTCGGGGTTGGCGACAAGAGCCGA
AGACATCAAGAATAGCGGACAAAAGAGTGTGAGGAGGAGAAGGGTGACCG
CAGCGTAGATGGACAGCTCAAAAACTTCTGATACTCCTTCCTTTCTATTT
TCCTTCCTGCTGAGTGCAGAAAACGCCTCTAAAGCTTTTTTGCTGTGGTG
TTCCTTAGAGGTCCTGTTTTATTTCGTCATAAACCGTCTAATATATCCAC
GCATAAAGCAGCTGCGGGCCGCTCCTTCTCATCCCCCGGAAAAATCTCCT
CTCGAATGTCTTGCTCGATTGACAGACGCGCTACACCGCTTACGAGGAGT
CTATAGCCCTGAATCATTCTGGTCAGGATGGTTCAAGGGAGCGATGCATG
AGAATATCCGGCGAAATAATGTAAAAGAGTTTCTGTGCTGGGCGATTTGG
CACGTGAAGTCCTCCGAGGAGTTGGCGAAATCGGATGTGCTAGCTTTGGA
AAAGACAGTTGTACTAATGGAGCGACTACAAGGAAAATCTTTCCCGGCTG
GCCATAATCCAGAGGTTGAACATGTTGCCTTTACCCGTGAGCCTCTCTAC
TTTGCCCATCGCTTGCTCATTTTCTACGTGGTCGTCAAATGTGCTCAGCT
CATGGGGCACGGCTTTCTGCTCTTGACGGGGCATCGGCGGTATGTAACAC
CTACTCACAACCTAACTTACTGGCATCGGCCTTGCCAGCAAGAGGAGGGG
TCAATTAAGCAACCGCCCCTTCTCTTCTTTCACGGTATCAGCCCAG back to top
|