rna2260, rna2260 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2260
Unique Name	rna2260
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3026
Alignment location	CM002458.1:1305285..1307084 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100166g6.1622.mrna
Orig protein id	gnl\|cribi\|Naga_100166g6.1622
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:1305285..1307084 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100166g6	gene2161	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2260	rna2260-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28425.1	cds2252	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:1305285..1307084-
coding sequence from alignment at CM002458.1:1305285..1307084-

mRNA sequence

>rna2260 ID=rna2260|Name=rna2260|organism=Nannochloropsis gaditana|type=mRNA|length=3026bp
ATGGAAGGCAAATATATCAATCTTTCCCTGCACTACCTTGAACAAGTAAT
TGTCGCTTTGCAAGAGAAAGCCCGACGGCAGAAAGATGAAGACGAAGAAA
TTACAAACCGGCTAAGTGCCCCTAGGCTCGGGCGTGGATCGTCGTCCTCC
TCTTCTACGGGAGGCCAATCGTCTTACCATATTCCTTACCGAAACAGCGT
CATGACGTCAATCCTGCGCGATTCGCTCGGTGGTAACTGTCGAACGGTTT
TCGTCGTTACCCTGAACTCGGAAATGGATCATCTCGAAGAGTCCCTTTCA
ACTTGTCGCTTTGCGCAACGCTGTGCTCAACTGTCCATGGACGTGCTCGT
GAACGAAGAGATTGACCCTTACCATCTAAGCGCCTCCCTCCAAGCTGAGG
CCGCCTCTTCTCCCGTTGCTTTCCTACCTTCCTCTTCGGGTGCTTCTTGC
GTCCCTTCTGCTTATCAATGGGTCTACACACTGAGTCGTCCATTGGTTGC
TCATTGTGCTCAGCTGCTTCTTCGCGGAGAGTCTATGCGCGAGGGAGGAA
TAAAAGAAGGGGCTACGGAAGGGAAGAAAAGCGCAAGCGTCACCATTCAC
CAACCTCCTAATTTGGAGCACGAAAACGACGGCATGCTACGCCACCCTTA
CTATAATCATCGTCAACAACATCAACATCATCATCATCATCATCATCAAC
AACAACAACAACAACAATATTGTGACCCCTCTTTTCCCATAAAGGAATCA
TCCTGTAATGCCCCGGAGGAAGAAGGACCACATCTGCATGGGTCATCAAG
TCAGCATCGCCTGCAATCACCTTGTGCGATGCCCGTCTTACAGGCCATCA
CTGCTGCTCCTATCCAAAGCAAGCAGAAGGGACGAAAGCCTAAAGCTGGT
AATATTGATTGGGGAGTCAAAGAGCGCCTTCAGCAGGGGCAGATCTTTTT
CAAGCTGGGCCGGGGAGGGAAAAGGCACGAAAGGTTTCTTTGGGTGTCTC
CTGACATGGCGTCCTTACGATGGCGAAAATTAGGGAGGAGAGGAGGGGGA
GATGGTCGGAGAGACGGAAATAAGATAGAAGCCCTCTCTCCGACTCCGGT
ATCTACGTCACTGCCCTTCGCGGAATGCCAGCGCGTCGTCGTGGGGCGAG
ACTCCGGCAGCCCAGAGAGGGGCGCATCAAAGAATAGGGACGGAAGCGCC
TGTTTCACTCTGTACAGCCACGATCGATACGTGACGTTTGAGGCCCCCCG
GGGCTCGCAAAGAGAACTTTTGCGCGACGCGTGGGTGGCAGCCCTGGCTC
ATATGATCCATCGAACACAAGGGCTGACCACATATCGTGACATTCATAGC
ATGTCCCACGAACACATGTTTGGGAAAACTAGAAGTGGTGTTGAATCGGG
GCCTTCCATCTTGCCAGAATCATGTGCTCAGTCGGAGATGCACGACGATC
CCACGGGATACAAGGATGCCGAGTCGCACCGCCAGTCGCGTTCTCAAGGG
GAGGAACAATGCAAGATAGAAGAAGAGACCCCTGTATCTGCCCAAGAATT
GCCGTACCACCGAGAGGGGAGATCTCCACGCGTGCAGGAATATCCAAGCA
TGCCATCGGCCTTTTGGACAAGTCACACACAAGAGCCAACGAGGTATATA
TACCCAGCAATGTCTGAGATTCCTGCGCCTGCGTTCTTCACGCATGCCCA
GCATTCCCTCGACCGCCAGAATTTTTGTAACCCTCATTCGCATCAACAGC
GGCACAGTCGAGAGGCTCTCCTCCATCGCTCTCTTTCAGGTTCAAATGCG
TTCCTGGCAGACCAATCGACGCAAGGAGATGACCATGAAGCTCCCCGGCA
GAGCTATCCGGACCAGAATGACTCGTCGTTCCGCAGCTTCACCACGCCCC
AGCGCAAAATGGGTTCCCGGAGAGATAATGAACAGCAGTCAGCAGTCAGC
AGCAACAGCAGGACCGTCAACAGCAGCGAAGATCGATATCGAGTGCCGTC
GGAAGCTTCTAGCCATCCAATCAATCCTAACCTGGCAGCCACACATCCTG
CTTCGATGCAGAGTAACATGCAGCGCTCAGGTTCACAAACACCCCTGAAG
GAAGGCGCGCAAGCAGAACGCCAGGGGTCAGGAGAGGTCAATCTTCATCC
CTCCTTGATAACTCCGTCAACGGAAGTCCTTCCGCACGAGCGTGAAAGAG
CCGGAGTAGCCGCAAGGCAAGGGGTTGAAGAAAGCAGCATTCAACATGTG
GGAGAAGGGCGGGAGTGGGGAAGGAGCAGCAGGGAAGGTACATTGGCGTG
CGAGGGCAAGGGGTATCCCATCTACCCTCCACCACGTCCAAATGTCTTAA
CCACCTTGTTCGTGCACACGGGTTCCTTGCCCAAAGGCCCGTCACCCGAA
TTTTCTTCCTCCCCTCAACTTTCTTCCACGTCACGTCGTCATCACACTCT
CTCCGGAAGCGCCCCCTCTCCCTCCTCAGCCTACCCGCGCTATTCCCCTT
CGCAGCCCCCAGATGTAGCATTGTCCTCCCCCCCTTCGCTTCCTCGAGAA
GAGAAGGCCTTCACTGCTTCTGCTGAGAGAGGATCGTACAGTACGAAGAC
TGCCCTGGTCCCTGCTTATGCTTCTCCCTCATCCTTCCGCTCCCCCTCCT
CTGCATCCTTCTATTCCGCATTCAAGCGCGGCGGTAGTCGTTCACAAACC
CAAGCAAGCACGCATGACACCGTAAATTCCCGCCAGAACACTTCCTCTTC
CTTCGTCACCTCCATCATGGTCGCCTTAGGCGGACGTAGGAAGGAAGAAA
AGAGGGCAGAGGCGCATGCTTCTCATACACCAGAAAGGGAAAAGAATTCG
GGGAGCTACGCAGCGCAGGGTTTGTTGAAACGCACAGCCAGCATCAACCA
GCAGGCACGCCGAGCCATGTATTGAGGCGGGATGCGAGTGAAGGACTTTT
GATATGGAATGATCGCAAAGTGCCGCTGAAACTTTATATAATGTGCACAA
AGACATGGAAAAAGACTTTAATCTCG

protein sequence of rna2260

>rna2260-protein ID=rna2260-protein|Name=rna2260|organism=Nannochloropsis gaditana|type=polypeptide|length=260bp
MGEEFILAEAPWLLSDDTEDASLLARFPALLAAYRRVTDSLFCPFDSTAP
PPTVSSPSPSASCPLPSPLAFFSLRRNSSSSPTSFSAPAPGSFSRTAVLF
RHFLQSEAPRAYSKLRKAQRELEGQLQVLSAHEGDKGGEGHLNEKIKGNE
KASREVMALEGEEKGESYASRLSLGPQGWRKGREAGDRTVGDEGVEEEGE
EREDLEEAWARVQAEEAAERRAEKRRVVGRLLDKWKIAWMLWRSKGRYRV
RREEGGRRYI

mRNA from alignment at CM002458.1:1305285..1307084-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2260 ID=rna2260|Name=rna2260|organism=Nannochloropsis gaditana|type=mRNA|length=1800bp|location=Sequence derived from alignment at CM002458.1:1305285..1307084- (Nannochloropsis gaditana)
TTGGCAATGGCCCGGGGGCGCCAGGGGGAGGGCGGGAAGGAGGGCGGGAG
GGAGGGCAAGGAGGAAAAGGGCAGTGGAAAGGCTTGGAGGGGAGCACGCG
CATACGACTGACGGGAGAAAGTGGGGTTATACGGTGAGGGATGAGGGAGG
GAGATAGGGAAGGAGGGAGGGAGGGACGGGAGAAGGTCGAGGAGGGAGCC
ATCGATGTAGTTTCCACCCTTGCCTGGACCGATGAGGGCTTCTTGTGTTC
TCTATCTCACTGCTCCCCTCTTCATGACTCCCGTTCATTCTCTCTCCTGT
CCCTCCCCTGCTCTTCCCCACGTCCCTCCTCGCCTCCCTCCTGGCTTTGG
CAGGAGTACGGACCGGGCCCCTCGGCTAGGAGCATCGTTGCGGCGATCGG
TGCGAGCCCGGCTTCTGACGGCATTGACGGCGCGCCTGTACCACGAACAC
GGGCAGGAGATCGAAGAGGCAGGGAGGGAGGGAGAGGGACAGAGAGTCGG
GGCACCCTGAAGTTTGGTACTTTCAAGCTCATGCTTATGGCTTTTTTCTT
GCACGAACAGCGGGAGCTTCCCTTAGCCTACTTGATTTATCGTCTGTCAG
AGGCGTGTCTACGTGGCGCCGACAATTCAGGAGAAGAAGGACGGGAAATG
GGGGAAGAATTCATCCTGGCAGAGGCGCCCTGGTTGTTAAGGTGAGGAGG
AGAGAAAGAGGAAGGGACAAGAAGATGAGAATGGAGGACCGGGGGAGCTT
GTGGAGGCTCAAGGCTCGAATAGAGCCTCACTTCCACCCTCTTCCGTGTG
CATTGACGGACCCTCGCTTCACCTTCCTTCCTCCAAACGCACCTAGCGAC
GACACTGAAGACGCGTCCCTTCTGGCCCGCTTCCCAGCCCTCCTGGCCGC
CTATCGTCGCGTCACGGATTCCTTGTTCTGCCCCTTTGACTCGACTGCCC
CCCCCCCGACTGTCTCCTCCCCGTCCCCCAGTGCGTCCTGCCCGCTTCCT
TCCCCCCTCGCCTTTTTTTCACTCAGGAGGAATTCATCCTCCTCCCCCAC
CTCCTTCTCCGCGCCCGCCCCCGGATCTTTCTCTCGCACGGCAGTTCTTT
TCCGCCACTTCTTGCAGAGCGAGGCCCCGCGCGCGTATTCGAAGCTAAGG
AAAGCTCAACGTGAGCTAGAGGGACAACTACAGGTCTTGTCGGCGCATGA
GGGCGATAAAGGCGGAGAGGGGCACTTAAACGAAAAAATAAAAGGCAATG
AGAAAGCGTCGAGGGAAGTTATGGCCTTAGAGGGCGAGGAAAAAGGAGAG
TCATATGCCTCGAGACTATCACTTGGCCCGCAGGGCTGGCGAAAAGGGAG
GGAGGCGGGAGATAGGACGGTGGGCGACGAGGGGGTCGAGGAGGAAGGAG
AGGAGAGAGAAGACTTGGAGGAGGCGTGGGCCCGAGTGCAGGCGGAGGAG
GCAGCCGAACGTCGAGCGGAAAAGAGAAGGGTGGTGGGTCGGTTGCTGGA
TAAATGGAAAATAGCGTGGATGCTGTGGAGGAGCAAAGGAAGGTACAGGG
TGAGGAGGGAAGAGGGGGGCAGGAGGTACATTTAAGGGGGGATGATAGAA
AATGTGTGGTCCGCGGAGAGGGCGTCCTGGAAGAGGTCCAGGAAGAAAAG
CAAAGGAAACTGACTGTACACAGCAGCAAAGGAAGCGCCACGGCATGTAA
CGGAATACATTTAAACCTACTTGCCCATCTCTACATTCCTTCCGAGTATT
TATTGGGTAGTACAGCGAAAAAAAAGGAACAAAATATCAGGCGATGAATA

Coding sequence (CDS) from alignment at CM002458.1:1305285..1307084-

>rna2260 ID=rna2260|Name=rna2260|organism=Nannochloropsis gaditana|type=CDS|length=1566bp|location=Sequence derived from alignment at CM002458.1:1305285..1307084- (Nannochloropsis gaditana)
CGACGACACTGAAGACGCGTCCCTTCTGGCCCGCTTCCCAGCCCTCCTGG
CCGCCTATCGTCGCGTCACGGATTCCTTGTTCTGCCCCTTTGACTCGACT
GCCCCCCCCCCGACTGTCTCCTCCCCGTCCCCCAGTGCGTCCTGCCCGCT
TCCTTCCCCCCTCGCCTTTTTTTCACTCAGGAGGAATTCATCCTCCTCCC
CCACCTCCTTCTCCGCGCCCGCCCCCGGATCTTTCTCTCGCACGGCAGTT
CTTTTCCGCCACTTCTTGCAGAGCGAGGCCCCGCGCGCGTATTCGAAGCT
AAGGAAAGCTCAACGTGAGCTAGAGGGACAACTACAGGTCTTGTCGGCGC
ATGAGGGCGATAAAGGCGGAGAGGGGCACTTAAACGAAAAAATAAAAGGC
AATGAGAAAGCGTCGAGGGAAGTTATGGCCTTAGAGGGCGAGGAAAAAGG
AGAGTCATATGCCTCGAGACTATCACTTGGCCCGCAGGGCTGGCGAAAAG
GGAGGGAGGCGGGAGATAGGACGGTGGGCGACGAGGGGGTCGAGGAGGAA
GGAGAGGAGAGAGAAGACTTGGAGGAGGCGTGGGCCCGAGTGCAGGCGGA
GGAGGCAGCCGAACGTCGAGCGGAAAAGAGAAGGGTGGTGGGTCGGTTGC
TGGATAAATGGAAAATAGCGTGGATGCTGTGGAGGAGCAAAGGAAGGTAC
AGGGTGAGGAGGGAAGAGGGGGGCAGGAGGTACATTTAAATGGGGGAAGA
ATTCATCCTGGCAGAGGCGCCCTGGTTGTTAAGCGACGACACTGAAGACG
CGTCCCTTCTGGCCCGCTTCCCAGCCCTCCTGGCCGCCTATCGTCGCGTC
ACGGATTCCTTGTTCTGCCCCTTTGACTCGACTGCCCCCCCCCCGACTGT
CTCCTCCCCGTCCCCCAGTGCGTCCTGCCCGCTTCCTTCCCCCCTCGCCT
TTTTTTCACTCAGGAGGAATTCATCCTCCTCCCCCACCTCCTTCTCCGCG
CCCGCCCCCGGATCTTTCTCTCGCACGGCAGTTCTTTTCCGCCACTTCTT
GCAGAGCGAGGCCCCGCGCGCGTATTCGAAGCTAAGGAAAGCTCAACGTG
AGCTAGAGGGACAACTACAGGTCTTGTCGGCGCATGAGGGCGATAAAGGC
GGAGAGGGGCACTTAAACGAAAAAATAAAAGGCAATGAGAAAGCGTCGAG
GGAAGTTATGGCCTTAGAGGGCGAGGAAAAAGGAGAGTCATATGCCTCGA
GACTATCACTTGGCCCGCAGGGCTGGCGAAAAGGGAGGGAGGCGGGAGAT
AGGACGGTGGGCGACGAGGGGGTCGAGGAGGAAGGAGAGGAGAGAGAAGA
CTTGGAGGAGGCGTGGGCCCGAGTGCAGGCGGAGGAGGCAGCCGAACGTC
GAGCGGAAAAGAGAAGGGTGGTGGGTCGGTTGCTGGATAAATGGAAAATA
GCGTGGATGCTGTGGAGGAGCAAAGGAAGGTACAGGGTGAGGAGGGAAGA
GGGGGGCAGGAGGTACATTTAAATGGGGGAAGAATTCATCCTGGCAGAGG
CGCCCTGGTTGTTAAG

Synonyms

Publications