rna226, rna226 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna226
Unique Name	rna226
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1290
Alignment location	CM002455.1:571330..574864 -

Link to JBrowse

Properties


Property Name	Value
Product	mitochondrial phosphate carrier 1
Orig transcript id	gnl\|cribi\|Naga_100100g14.8913.mrna
Orig protein id	gnl\|cribi\|Naga_100100g14.8913
Gene	MPC
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:571330..574864 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MPC	gene215	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30445.1	cds226	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna226	rna226-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:571330..574864-
coding sequence from alignment at CM002455.1:571330..574864-

mRNA sequence

>rna226 ID=rna226|Name=rna226|organism=Nannochloropsis gaditana|type=mRNA|length=1290bp
ATGGAACACCACGAGAAAAAATATCTACCTTGGCAAACTCCACTTGCAGC
GGCAGCTTTTGTTCCTCCTTTGCTCGGACAAGAGCCTAATGCTGTGCCCC
TCGGGAGGCAGGTGAAGCTCGTGCCCCCGTCGGAGGAGCGCGTAGCTCGC
ATCATAAAGCAAGCCCATCAGAAGCGCTTAAAGCAAGTGCGTGTGGCCGA
CCAGAGGATAGCTGCCGCCATCCGAACGCACTACAGGGAGAGGCTTGAGA
AGGGCAAAGCTCGGGTCATAGCGAAAGCTTATGCAGCCTGGCAACGAGAC
AAAAGGGAGCGCGTGGGTACGCTGAAAGCGCGTTTGGGCGAGACTGTCCT
ATCGATCGGTTCCGGACATCGTATGGCGGAAAAAGAGGTGGCAGAGCGCG
AGGAAGGGACTGATGAAAGAGAAGCCAAGGCTAAGCAACGTTCTGAAAAA
GAGTCGTTCCGATTCAGTCAGGCGCAAGAACGTATCCGTGACGCAGGGCA
GCAGCGGAAGGGGGCGAAAGACGCGTCGTTGCAGTCTGGTCGCCGAGAAG
AGAGTCGGAGAGCTCCTGCCGAGACGGAAGCAGGTGTCGGCGAGATCGAT
GGGGAGGGGGGGCGCCGGCTCGGAGGAGGCGAGGGAATCGAGTGGCAGGC
GGAGGAAGCGGTAGAGGCAATATTGCGGGGAACAAGATCCAAGATGGTAT
CGCCTTCAAATGAGGATAATACCTCAGGAAGTAGCGGTGTCGGTGCAGCT
CCTCAGATTCTGCGGAAATCGCCATTGGAAACGACAGGAGTGGGTGGGGA
AGGGAGAAAAGAGTCCCACAGGTCAAGGGAAAGAAGGAAGGGAAACGAGG
AAGAGGGGAAAGATCCACTGATAGAAAAATCTTCGAGAGACCGATTGGAA
TCGATCTGGGAGATGAGTCCAAGCAAGAAGAGGGCGCCTATGGCAGAAAA
TGAAGGAGGGGAAGGGTCTGAAGATGACTCATCCCTCCTGGAGGAGCAAG
ACCTCGAGACTGACGATGATGGAGGAGGGGGAAATGCTGCCGTGGGAGAG
AAGTTACCCGTCGATCGAATCATGAGGGTATACCAGGAACGACGCCAGGA
GCTGATTAATCGTCTTGAGACACGTCGACGTGAAGGGTACAGACTCCCGT
CGACCTTGACGCCGGCCAGGTCGACTACGCCCTCTCAACGTCCAATAACT
CGGGTGACACCAGGGATGCCTCCACGCGAAGAACGCTCTCGCTTGCTTGA
ACTCATTAAGCAGCGAGAAGCACGCGTTTATCGTGGTTAA

protein sequence of rna226

>rna226-protein ID=rna226-protein|Name=rna226|organism=Nannochloropsis gaditana|type=polypeptide|length=1040bp
MFTLGPGRSKGMAFALKKRRTCNVDDRVASEACVLAFSTPRVSRCRLACR
GRMMLLFFVLEGLVALGEASVHPLSFMRGPGVRPGVHQPRPLIRPVYKRK
VFARPAFSESRDEKVESPDLECVAEALPPSPALNEAVPVQSIRLRKQKTE
VTRRNQLLTGGLLAGAVTATLLKVPSTSPAFAAMSTPLYVDKEVWAPLED
YMQMDGRERQTTYSPKFTAYLARLLINYDYASMTWWQRKTLVAPRESSLR
INRMLATKGFDATFQELDLDEDTFLSQDELRSALSDPDALNKRDRELLAQ
LQASVNFGLVRYQGKEGVDHLCRTLRSEFGVNRLGKRQLALLFALMDNLQ
PVEAIKQLIAEAENASVVGFNVTYPGFGYDAENPPTVKVGPSPGANVSAE
ARVKLAPTGRILKVVLETPMSGFSTPPKLEISPPIADDGVRAACIPKMNG
ETLERIVLSNPGKGYTETDRVSVVVNVEGQPLPWVLRSARPLLEMKVAGV
ELIKGKGGEGYAHDLPIKVEVSKPPFPVSAVATAKASAILSDPDELILRS
WLPPTNTTIPVTGLLPNNLVPKYDPCLERFIISPVEELDPNYCIYFEDEF
KVVPSQKFSKYFSFLDGPKARDPVEKERELDADVFWRFALCGALCCSTAH
ALLVPLDVVKTKMQASPRRYPSFVQSTKRIIDEGGPTALLLGAGPTVLGY
LVYGAVTFGLTEYLKRVFLDLAGPENATFYPFAILLLASMSAAFFGAVAV
TPFEALRIRSVTSSEDVAGGEDEIEGPSFRLESNQSPTALEDSTSVEEES
DPAASPPGPTAEKATTSVEESSGVKQPVSVLASTGVNGIQSNGAGPQKAI
EHGEGSGTGGAGVAVLSAESPPGNMMATVGQMLKEGTLGELYAGLGPAVV
GEIPFMMAKFAVFDAVSKAIYAVYPSASESVGLSLGVSLVSGMTAGVAAA
VVSQPFDTLTTKVTQYTQMRRSGGIFVAIKDVYSKGSFGGFFKGTFPRAV
KSAANIALQFFLYDFSKRGLHVSADDLKLFFDVMSGLEQT

mRNA from alignment at CM002455.1:571330..574864-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna226 ID=rna226|Name=rna226|organism=Nannochloropsis gaditana|type=mRNA|length=3535bp|location=Sequence derived from alignment at CM002455.1:571330..574864- (Nannochloropsis gaditana)
CAACCTCAGGACATGGAGAGGGGAGAAACATGCCATATATGTAATGTTTA
CATCGGGAAAGTATCTCTACTTGTGCGAGGTGCGTTGACGTCTCCTCAAC
GACCTTGAAATATACATGGTTGATTCAAAAGATGCCTCCCGCCCCGATTT
CTTTCTCCTCAAAACGTTATGTTCACATTAGGGCCTGGCAGGTCGAAAGG
GATGGCGTTTGCCCTTAAGAAGCGTCGGACATGCAACGTCGACGATCGCG
TTGCTTCAGAAGCATGCGTGCTGGCATTTTCGACCCCACGCGTCTCGCGC
TGCCGCTTGGCTTGTCGAGGCAGGATGATGCTACTCTTTTTTGTCTTGGA
AGGCCTCGTTGCTCTCGGGGAGGCGAGCGTGCACCCGCTCTCCTTTATGC
GTGGGCCCGGTGTCAGGCCGGGAGTTCACCAGCCACGACCTTTGATACGC
CCCGTATACAAGAGAAAAGTCTTTGCACGTCCCGCTTTTTCAGAAAGCAG
GGACGAGAAAGTAGAATCCCCAGACCTCGAGTGTGTGGCAGAGGCCTTAC
CGCCATCTCCAGCTTTGAACGAGGCTGTGCCCGTTCAAAGTATTCGTCTC
AGAAAGCAGAAGACGGAGGTGACGCGCCGGAATCAACTTTTAACTGGAGG
ACTCCTGGCGGGGGCCGTGACGGCCACGCTGCTCAAAGTGCCTTCGACGA
GTCCTGCCTTCGCCGCCATGTCTACCCCGCTTTACGTCGACAAGGAAGTG
TGGGCGCCGTTGGAGGACTACATGCAGATGGATGGGAGAGAGCGGCAAAC
CACGTACTCTCCAAAGTTTACGGCGTATTTGGCCAGACTCCTGATCAACT
ACGACTACGCGAGCATGACGTGGTGGCAAAGGAAGACCCTTGTCGCACCA
AGAGAATCCTCTTTGCGTATCAATCGCATGCTGGCCACCAAAGGCTTCGA
CGCTACATTTCAAGAGCTGGACCTGGACGAGGATACCTTTCTGTCTCAAG
ATGAGCTGCGGTCGGCGCTGAGTGACCCGGACGCTCTGAACAAGAGAGAC
CGGGAGCTTCTTGCACAGCTCCAAGCATCGGTGAATTTCGGCCTTGTGCG
GTATCAAGGGAAAGAGGGAGTGGACCACCTTTGCCGCACATTGCGCTCTG
AATTTGGGGTCAACCGATTGGGAAAGCGGCAGTTGGCCTTGCTGTTCGCG
TTGATGGATAATTTACAGCCGGTGGAGGCGATCAAACAATTGATCGCGGA
GGCGGAGAACGCCTCTGTGGTCGGCTTCAATGTGACCTACCCGGGTTTTG
GCTATGATGCCGAGAACCCTCCCACAGTCAAAGTAGGCCCGTCGCCGGGG
GCAAACGTGTCGGCGGAGGCCCGCGTGAAACTGGCGCCAACGGGACGCAT
CCTGAAGGTGGTGCTCGAGACACCCATGTCCGGCTTCTCCACCCCGCCTA
AGCTAGAAATTAGCCCACCCATCGCTGACGATGGCGTGCGGGCTGCCTGT
ATCCCGAAAATGAACGGAGAGACGCTCGAGCGCATCGTCTTGTCGAACCC
CGGCAAGGGCTACACTGAGACGGACCGCGTTTCCGTGGTCGTGAACGTGG
AAGGGCAGCCTCTCCCATGGGTTTTGCGGTCGGCGCGACCACTGCTTGAG
ATGAAAGTGGCAGGGGTGGAGCTGATCAAGGGTAAAGGAGGGGAGGGGTA
TGCCCACGACCTGCCAATAAAGGTGGAGGTGAGCAAGCCGCCCTTCCCTG
TATCGGCGGTAGCCACAGCCAAGGCCTCTGCCATCCTAAGCGATCCGGAC
GAGCTCATTCTCCGGAGCTGGCTGCCACCGACCAACACCACGATCCCCGT
GACTGGGCTTCTGCCAAACAACCTTGTACCGAAATATGACCCCTGCCTGG
AGCGCTTTATCATCTCGCCAGTGGAGGAGCTGGATCCCAACTATTGCATT
TATTTCGAGGACGAGTTCAAAGTGGTGCCCTCCCAGAAATTTAGCAAGTA
TTTTTCGTTTTTAGACGGCCCCAAAGCCCGGGATCCGGTCGAGAAGGAAC
GAGAGCTCGACGCGGATGTCTTCTGGCGTTTTGCCCTCTGCGGGGCCTTG
TGCTGCAGCACGGCCCATGCACTTCTGGTGCCCCTGGATGTGGTCAAGAC
CAAGATGCAGGCTAGCCCGAGAAGGTATCCCTCTTTCGTACAGTCAACGA
AGCGTATCATCGACGAAGGCGGCCCGACTGCCCTGCTCTTAGGCGCTGGG
CCGACCGTGCTGGGGTATCTCGTCTACGGCGCCGTCACCTTTGGATTGAC
GGAGTATCTGAAGCGAGTCTTCCTGGACTTGGCGGGACCGGAGAATGCGA
CGTTTTACCCTTTTGCAATCTTATTGCTGGCCAGTATGTCGGCAGCTTTT
TTCGGTGCGGTGGCAGTCACTCCTTTCGAGGCCCTGCGGATCCGCTCTGT
CACGTCGTCGGAGGATGTAGCCGGAGGGGAGGACGAGATCGAGGGACCCT
CTTTCCGGCTGGAAAGCAATCAGAGTCCTACAGCATTGGAGGATTCAACC
AGCGTGGAAGAAGAATCGGACCCGGCGGCCTCCCCACCCGGCCCGACGGC
AGAAAAAGCTACCACCAGCGTTGAAGAAAGCTCAGGTGTGAAGCAGCCAG
TCTCCGTGCTGGCGTCAACCGGCGTAAACGGCATCCAGAGCAACGGTGCT
GGCCCCCAAAAGGCCATCGAACATGGCGAAGGCAGCGGCACAGGAGGTGC
CGGGGTGGCCGTGTTATCGGCGGAATCCCCGCCTGGGAATATGATGGCGA
CTGTGGGGCAGATGCTGAAGGAGGGCACTTTAGGTGAATTGTACGCGGGC
CTAGGTCCAGCGGTGGTTGGTGAAATCCCTTTCATGATGGCTAAGTTTGC
GGTGTTTGATGCTGTCTCAAAGGCCATCTACGCCGTTTACCCCTCTGCCT
CCGAATCCGTAGGGCTGTCTTTGGGCGTTTCCTTAGTGAGCGGGATGACC
GCGGGTGTGGCGGCCGCCGTTGTCTCACAGCCTTTCGACACTTTGACAAC
GAAAGTCACGCAATACACGCAGATGCGACGCTCTGGTGGCATCTTTGTTG
CGATTAAAGATGTTTACAGCAAAGGGAGCTTTGGAGGGTTTTTCAAAGGC
ACTTTTCCTCGTGCTGTCAAGTCCGCTGCTAACATTGCTCTCCAATTCTT
TCTCTACGATTTCTCGAAACGTGGCCTCCACGTATCTGCGGACGATCTAA
AATTATTTTTTGATGTCATGTCAGGTCTGGAACAAACGTAGTAGCGGAAT
AGCCTTAGGGATTTGCAAATTCTCCCTGGCGCCCGTATGTACATGGCCTG
CACATTCCTTCTGTCAGGACATTGACAGCTCTCGAGGAAGGGGAAACTTA
AGCAGCAGAAAGTGATGATCACTATGTAAAATTATAGTTGCAATGAATTA
TAAAGAAACATGGACGATGCTCTGTTAAGCAAAAGGATTGATACGTCCGC
GGAGGATTGATTTCTCTTATTTAAGTAGCAAAGGG

Coding sequence (CDS) from alignment at CM002455.1:571330..574864-

>rna226 ID=rna226|Name=rna226|organism=Nannochloropsis gaditana|type=CDS|length=3123bp|location=Sequence derived from alignment at CM002455.1:571330..574864- (Nannochloropsis gaditana)
ATGTTCACATTAGGGCCTGGCAGGTCGAAAGGGATGGCGTTTGCCCTTAA
GAAGCGTCGGACATGCAACGTCGACGATCGCGTTGCTTCAGAAGCATGCG
TGCTGGCATTTTCGACCCCACGCGTCTCGCGCTGCCGCTTGGCTTGTCGA
GGCAGGATGATGCTACTCTTTTTTGTCTTGGAAGGCCTCGTTGCTCTCGG
GGAGGCGAGCGTGCACCCGCTCTCCTTTATGCGTGGGCCCGGTGTCAGGC
CGGGAGTTCACCAGCCACGACCTTTGATACGCCCCGTATACAAGAGAAAA
GTCTTTGCACGTCCCGCTTTTTCAGAAAGCAGGGACGAGAAAGTAGAATC
CCCAGACCTCGAGTGTGTGGCAGAGGCCTTACCGCCATCTCCAGCTTTGA
ACGAGGCTGTGCCCGTTCAAAGTATTCGTCTCAGAAAGCAGAAGACGGAG
GTGACGCGCCGGAATCAACTTTTAACTGGAGGACTCCTGGCGGGGGCCGT
GACGGCCACGCTGCTCAAAGTGCCTTCGACGAGTCCTGCCTTCGCCGCCA
TGTCTACCCCGCTTTACGTCGACAAGGAAGTGTGGGCGCCGTTGGAGGAC
TACATGCAGATGGATGGGAGAGAGCGGCAAACCACGTACTCTCCAAAGTT
TACGGCGTATTTGGCCAGACTCCTGATCAACTACGACTACGCGAGCATGA
CGTGGTGGCAAAGGAAGACCCTTGTCGCACCAAGAGAATCCTCTTTGCGT
ATCAATCGCATGCTGGCCACCAAAGGCTTCGACGCTACATTTCAAGAGCT
GGACCTGGACGAGGATACCTTTCTGTCTCAAGATGAGCTGCGGTCGGCGC
TGAGTGACCCGGACGCTCTGAACAAGAGAGACCGGGAGCTTCTTGCACAG
CTCCAAGCATCGGTGAATTTCGGCCTTGTGCGGTATCAAGGGAAAGAGGG
AGTGGACCACCTTTGCCGCACATTGCGCTCTGAATTTGGGGTCAACCGAT
TGGGAAAGCGGCAGTTGGCCTTGCTGTTCGCGTTGATGGATAATTTACAG
CCGGTGGAGGCGATCAAACAATTGATCGCGGAGGCGGAGAACGCCTCTGT
GGTCGGCTTCAATGTGACCTACCCGGGTTTTGGCTATGATGCCGAGAACC
CTCCCACAGTCAAAGTAGGCCCGTCGCCGGGGGCAAACGTGTCGGCGGAG
GCCCGCGTGAAACTGGCGCCAACGGGACGCATCCTGAAGGTGGTGCTCGA
GACACCCATGTCCGGCTTCTCCACCCCGCCTAAGCTAGAAATTAGCCCAC
CCATCGCTGACGATGGCGTGCGGGCTGCCTGTATCCCGAAAATGAACGGA
GAGACGCTCGAGCGCATCGTCTTGTCGAACCCCGGCAAGGGCTACACTGA
GACGGACCGCGTTTCCGTGGTCGTGAACGTGGAAGGGCAGCCTCTCCCAT
GGGTTTTGCGGTCGGCGCGACCACTGCTTGAGATGAAAGTGGCAGGGGTG
GAGCTGATCAAGGGTAAAGGAGGGGAGGGGTATGCCCACGACCTGCCAAT
AAAGGTGGAGGTGAGCAAGCCGCCCTTCCCTGTATCGGCGGTAGCCACAG
CCAAGGCCTCTGCCATCCTAAGCGATCCGGACGAGCTCATTCTCCGGAGC
TGGCTGCCACCGACCAACACCACGATCCCCGTGACTGGGCTTCTGCCAAA
CAACCTTGTACCGAAATATGACCCCTGCCTGGAGCGCTTTATCATCTCGC
CAGTGGAGGAGCTGGATCCCAACTATTGCATTTATTTCGAGGACGAGTTC
AAAGTGGTGCCCTCCCAGAAATTTAGCAAGTATTTTTCGTTTTTAGACGG
CCCCAAAGCCCGGGATCCGGTCGAGAAGGAACGAGAGCTCGACGCGGATG
TCTTCTGGCGTTTTGCCCTCTGCGGGGCCTTGTGCTGCAGCACGGCCCAT
GCACTTCTGGTGCCCCTGGATGTGGTCAAGACCAAGATGCAGGCTAGCCC
GAGAAGGTATCCCTCTTTCGTACAGTCAACGAAGCGTATCATCGACGAAG
GCGGCCCGACTGCCCTGCTCTTAGGCGCTGGGCCGACCGTGCTGGGGTAT
CTCGTCTACGGCGCCGTCACCTTTGGATTGACGGAGTATCTGAAGCGAGT
CTTCCTGGACTTGGCGGGACCGGAGAATGCGACGTTTTACCCTTTTGCAA
TCTTATTGCTGGCCAGTATGTCGGCAGCTTTTTTCGGTGCGGTGGCAGTC
ACTCCTTTCGAGGCCCTGCGGATCCGCTCTGTCACGTCGTCGGAGGATGT
AGCCGGAGGGGAGGACGAGATCGAGGGACCCTCTTTCCGGCTGGAAAGCA
ATCAGAGTCCTACAGCATTGGAGGATTCAACCAGCGTGGAAGAAGAATCG
GACCCGGCGGCCTCCCCACCCGGCCCGACGGCAGAAAAAGCTACCACCAG
CGTTGAAGAAAGCTCAGGTGTGAAGCAGCCAGTCTCCGTGCTGGCGTCAA
CCGGCGTAAACGGCATCCAGAGCAACGGTGCTGGCCCCCAAAAGGCCATC
GAACATGGCGAAGGCAGCGGCACAGGAGGTGCCGGGGTGGCCGTGTTATC
GGCGGAATCCCCGCCTGGGAATATGATGGCGACTGTGGGGCAGATGCTGA
AGGAGGGCACTTTAGGTGAATTGTACGCGGGCCTAGGTCCAGCGGTGGTT
GGTGAAATCCCTTTCATGATGGCTAAGTTTGCGGTGTTTGATGCTGTCTC
AAAGGCCATCTACGCCGTTTACCCCTCTGCCTCCGAATCCGTAGGGCTGT
CTTTGGGCGTTTCCTTAGTGAGCGGGATGACCGCGGGTGTGGCGGCCGCC
GTTGTCTCACAGCCTTTCGACACTTTGACAACGAAAGTCACGCAATACAC
GCAGATGCGACGCTCTGGTGGCATCTTTGTTGCGATTAAAGATGTTTACA
GCAAAGGGAGCTTTGGAGGGTTTTTCAAAGGCACTTTTCCTCGTGCTGTC
AAGTCCGCTGCTAACATTGCTCTCCAATTCTTTCTCTACGATTTCTCGAA
ACGTGGCCTCCACGTATCTGCGGACGATCTAAAATTATTTTTTGATGTCA
TGTCAGGTCTGGAACAAACGTAG

Synonyms

Publications