rna2254, rna2254 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2254
Unique Name	rna2254
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3432
Alignment location	CM002458.1:1269701..1271543 -

Link to JBrowse

Properties


Property Name	Value
Product	midasin-like protein
Orig transcript id	gnl\|cribi\|Naga_100388g7.10438.mrna
Orig protein id	gnl\|cribi\|Naga_100388g7.10438
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:1269701..1271543 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100388g7	gene2155	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28427.1	cds2246	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2254	rna2254-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:1269701..1271543-
coding sequence from alignment at CM002458.1:1269701..1271543-

mRNA sequence

>rna2254 ID=rna2254|Name=rna2254|organism=Nannochloropsis gaditana|type=mRNA|length=3432bp
ACAACGTGACAAGAGCATCACCTTTGCCTGTTGACCATTTATCTCTATAT
TTACAAGCCCGATGCCATGATTAAAAGGAAAATAATTTGTGGCCCGATGG
GGGGCTTGTCCGTTTGTCATGGTAACGGATACTGGGTCGCATGCAATAGG
ATGGATGACTCACAGCTTCTCGGTGCACTGTAACATAAGGGAAAATAAGC
TTCACATTGTCAGCGGCTTCCAGCACCCATTCATACAACAGGAGTTGACG
ACTGCCTCGGGTCTAAATTGCGAAAATGGTTAATACCGATGGAGATGCAA
GCCACCCCTCCATTCTGGTATGTTTTGGAAGCGCCACGGGCAATTCCGAG
TTCATCGCCAAGCGCATCCACGCCGAGCTTCAGAACAAGCATGGATTACC
AGGTGCCCGGTTGCTGGCCATGAATGATTGGAAGAAGCTATCCAATCCCA
CATTTGAAGAGTACGAGGCAGGCATATTTGTGTGCGCCACTACTGGGAAT
GGTGACGCCCCGGAAAATGCAGAAAAATTCTGGCGCTTCCTGAAGCGGCG
GACGCAGCCCAAGACGCTCCTGGCCAACCGAATGCACTTCGCCGTGTTGG
GTCTGGGGGACACGAACTACGATAAATTCTGTCACATGGGCAAGAGTATG
GACACGCGCTTGTCCGAAGTGGGTGGCCGACGAATGCACAATTTGGGGAC
AGCGGACGAGGCCGTGGGATTGGAAGGCACAGTGGAACCCTGGATTGAAA
CTCTGTATCCGGCGTTGATGAAAGCGTTAGGGAGGGACGAAGCTGGCGCA
AAGGATACGGCCCTTGCCTCGGTGGGCAACGGAGAAGCCTCAAACAAGGC
CAATGATGACAGCACCCTCGGTGTGGGCCCGGAGACCGGGAGGGAGGGAA
TGGCCGGGCAGGGGGAGGAAGGAGCCCCTGCAATGGAGGTGGAAAGGGTG
GCCGTGGAAGGCAAAGTGGAGGAAAAAGACGCGGAGCCACACGTGGCGGA
TCGCGTGGGCCTGCCTCAAGCGAGAGGGGGGCCTTTGACGCAAGCAAGCG
GGGCTCAGTGGGTGGAAAGCCTTCTGGCCCCCGCCGACTTCCAACAAATC
CGAGAGACGGCGTTGGCAGCAGCCAAAGACCGACCCTGGACCGCATACAC
CCCCTCCGTCAAGGTCGTTTTTATGGACGAGAGCGGCCCCGGGGCGGGAT
GCACCCCGCCTGTCGCCGAGGCCCACCCCATCCCGAGACGGGGTTCTCCC
CCACGCTCCTCCACCTCCTCCCAGTCCTCCCTCCCTTGCTCGACACCTTT
TAGCCATGGCGGGGCTTTCCCCACGCCTTCGGCTGCCCCTTCCCCTACTG
CGCTCAAACCACCCAGCCCCTTCAAAGGACGACTCTCCCCCTTCACGGGC
GTGACGGGCGGGGGTAGGGCGGCTCCCACCGGCTCCGCCCCCGTAGCAAC
CCCGCAAGCACAGGGAGCCAGCTACAGCTACGAACATCCCGCACAGGCGA
AAGTGCGACACGCCGTGTACTTGACCAAGACGGCAGGAGACGGACACCAC
TCGGAGCCCCCCACCCGCCGGGTCCTGGAGCTGGAGCTTGACACCCAGGA
CTGTGACCCGCCCTTCCCGTACGTGCCCGGGGACGCGGTGGGTATCCGGT
GCCCGAACCGGACGGAGGCGGTGGAAAGAGTGCTGGAGCGGGTGGGGAGG
GAGGGAGGGAGGGCGGGCAACCGAAAGTCGCGGCTGCAGGTGACGGATGG
TGTGGCGGTAGGAGGAGTCTTGGGGACGGCGTGCTGGACGCTGGAGGAGG
TGGTAAGGGAGGTGATGGATCTGGAAGGGACGCCCAAGCCCCACGTCCTG
AAGGCGCTGGCCGCTTATACCCAGGACGAGGGCGACCAGGCCTTGCTCTG
GTGGCTGGGGGCGGGAGGGGAGGGAGGAAAAGCCCTCTACGAGTCGTGGA
TATTGGAGCAACGTCTGTCGCTGGCGGAAGTCTTGGAATTGATCCCCTCC
GCGGCCCCTACCTTGGCAGCCCTGCTCGATCTGCTCCCGCCCTTGCCCCC
CCGGTACCTACTCTGTGGCGTCCTCCCCCTTGGTCTGTCCCACCCGGCTA
CGTATCGCCTTCAGCGTGGTCGAGTACGAGCTCCCACGTCCCGGGGGGGG
GGATCCGACGGACGGGTCTCTGCACCTCCTGGATGGAAAGCATGCTGCGA
GAGGCGGCCGGGCCCGCCAGTGGGGACGACAAGTGCCTCTATACGTCGTC
CCTTGCCCCCTCCCTCCCTCCCTCCCTCCCCCCTGTACCTGAAAACCGGC
CAAGGAATTCGTCCTTCCAGGCAGCCCCTCCTGGCCCCTGATTTTGGTGG
GGCCCGGAACGGGCGTGGCTCCGTTCATGGGGTTTTTGTCCCACCGACAG
GCGCGGAGAGAGGCCTTGAAACACTCGCGGTCCGAAGTGTGCTCCGGTTA
CTGGCGGGGGGGTTTTGACGTGTGGGACGACGCGGACGGGGCGGGGACCG
GGGTGGAAATGGAGGAGGAAGGGATAGGGTCCTTCGCGCAGAAGGGAGGG
GAAGGACCGATCTGGTTGTTCTTTGGGTGTCGAACGAAAGCGGGGGACTG
GATCTATCGGGAGGAAATGGAAAATTTCTTGAAACGGGGTGTCTTGAGTG
AGTTGCAGACGGCGTTTTCGAGGGAGAGCGCTCGAAAAGTGTACGTGCAA
GACAGGATGCAGGAGCAAGGGGAGGCGCTGGCCCGGATGCTGCTGAAGGA
AGGGGCCTATCTCTACGTGTGCGGGGACGCCGAGCACATGGCCCGCGACG
TGCATGCCAGCCTGAGGACCCTCTTGGTGCAGCACGGGGGTAGACAGGAG
GGGTTAGGGAGTGAGGAAGAGGCAGAGGCCTTCCTGGTCGAGTTAAAGCA
GCGCCAGCGTTATGTATTGGACATATGGGCGTAAAGCGATGCGAGAAGGG
GGAAAGGGCAGTAATGTGGGAGGGATCCTGTAGCGTTGGCGCAGGAGCAG
GAGCTTGCCAGCGAGCACCGTTCAAATCAATCAGACCCGATAAGAATGCA
CTCGGCCTCTGCCGCTTCCCTCCTTTGACTTTGGATGTGCGCAGGATGGA
GGGCACTTTGACTGCGTCCCGGTGGGCCCGCTTTCTGGTCGACTCCGAAA
TCCTCCGAACAAGCTCGCCGAACCGATTTCCTTCGAGAGGGCTGGCATGA
CACGGGGTGCATTGTGGCCTGAGGGAGATGCCACGCACGTCTGTGAGCCC
TTCATGGAGACGGCGCCGAGCATGAAAGGGAGGAGGTGACAAGAGAGCTG
TGGCATGACGCGGCTCAGCAGCAAGGTATTCGCGATGGACAATATAAAGG
AATTTAAAAATGACGTACAGATTGAAGCTATCGACCACTCGAAAGGCGAA
TTGTCAAAGAAATCAAACAGGGCGCGATATCT

protein sequence of rna2254

>rna2254-protein ID=rna2254-protein|Name=rna2254|organism=Nannochloropsis gaditana|type=polypeptide|length=516bp
MEEGRGTYEHVPKGGAGGTTQVLAPTDKEEQLEEQHEEGEGGGKEGEEEE
GEEGPLGDEDGVGMDMEDAEREGVGRGGEEAAQPHAPQEAPKASSSSSTS
GSHKARTGGNREGKRREEGEHLPGSEMKGREEDGKEDEVRDGEACANQEG
EREEGGEEGGGRIVTNPAPPAAVGEDAGPSIDPSCNVQDGEKKRKEEEEE
EEEEEEEVLDLRRGVQGLWQEHPHPSPDAAANLWARYRSASAPLALRLCE
QLRLVLEPQVASKLGGDYRSGKRINMRRVIPYIASGYRKDKIWLRRTKPA
KRAYQVLLAIDDSGSMKHFGAEDMALTALATLASGMSALEIGEVGVAAFG
ETLSLLHGFGEPWTEDAGARVLSSFTFEQEATDGALLLESVSAALEMAAR
GARQASAASQGPGAPAKIFQLVFVVSDGSFERGDKATLRRLVRQMGEKGQ
LLVLLIVDRSIEERQEVEYSATGGVRLSKYLDSYPFPYYVVLRDVQALPE
VMADALKQWFELLGRE

mRNA from alignment at CM002458.1:1269701..1271543-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2254 ID=rna2254|Name=rna2254|organism=Nannochloropsis gaditana|type=mRNA|length=1843bp|location=Sequence derived from alignment at CM002458.1:1269701..1271543- (Nannochloropsis gaditana)
ATGGAGGAGGGCCGTGGGACGTATGAACACGTGCCCAAGGGGGGAGCGGG
GGGAACGACACAGGTGTTGGCGCCCACGGACAAGGAGGAGCAGCTGGAGG
AGCAGCACGAGGAAGGGGAAGGCGGAGGGAAGGAAGGGGAGGAGGAGGAG
GGGGAGGAGGGCCCGTTGGGTGATGAGGATGGAGTGGGCATGGACATGGA
GGACGCCGAGAGGGAAGGGGTCGGGAGGGGAGGGGAGGAAGCCGCGCAGC
CACACGCGCCACAGGAGGCGCCCAAAGCCTCATCCTCCTCCAGTACATCC
GGGTCGCATAAAGCGAGGACCGGGGGGAACAGGGAAGGGAAACGGAGGGA
GGAGGGAGAACACTTGCCTGGCTCGGAAATGAAGGGGAGGGAAGAAGACG
GGAAGGAGGACGAGGTCAGGGATGGGGAGGCATGTGCGAACCAGGAAGGC
GAGAGGGAGGAAGGGGGAGAGGAGGGGGGCGGGAGGATCGTCACCAATCC
AGCCCCCCCTGCGGCAGTGGGGGAGGACGCAGGACCGTCGATCGACCCTT
CTTGCAATGTCCAGGACGGGGAGAAGAAGAGGAAGGAGGAAGAGGAGGAG
GAGGAGGAGGAGGAGGAAGAGGTGCTGGACCTTCGTCGCGGGGTCCAAGG
GCTTTGGCAGGAGCATCCCCACCCCTCCCCTGACGCGGCAGCCAACCTGT
GGGCTCGTTACCGCTCCGCCTCCGCGCCCCTCGCCCTCCGCCTGTGCGAG
CAGCTCCGCCTGGTCCTAGAGCCTCAGGTGGCCAGCAAACTGGGAGGGGA
TTACCGGTCAGGGAAACGGATCAACATGCGTCGAGTGATTCCTTACATTG
CCTCTGGGTACCGCAAGGACAAGATATGGTTGCGACGGACCAAACCGGCG
AAACGCGCGTACCAAGTCTTGCTTGCCATCGACGACTCGGGCTCCATGAA
GCATTTCGGCGCGGAGGACATGGCCTTGACGGCACTGGCGACGCTCGCCT
CGGGGATGTCTGCGCTGGAGATCGGGGAGGTGGGGGTGGCGGCCTTCGGG
GAGACATTGAGCCTATTGCACGGCTTTGGCGAGCCTTGGACGGAGGACGC
GGGGGCGCGCGTGCTGAGTTCGTTCACGTTCGAGCAGGAGGCGACGGACG
GGGCCTTGCTGCTCGAAAGCGTGTCTGCGGCGTTGGAGATGGCGGCGAGG
GGGGCGCGGCAAGCAAGTGCTGCCAGCCAAGGGCCAGGGGCCCCTGCCAA
GATTTTCCAGTTGGTGTTTGTCGTCTCGGACGGCTCTTTCGAGCGAGGGG
ACAAGGCGACGTTGCGGAGGCTGGTACGGCAAATGGGCGAGAAAGGGCAG
CTCCTGGTGCTGCTGATTGTGGATCGGTCAATCGAAGAGCGCCAGGAGGT
TGAGTACTCGGCCACAGGGGGCGTGCGGCTGTCCAAGTATTTGGATTCGT
ATCCTTTCCCGTATTATGTGGTGCTACGAGATGTACAAGCCTTACCAGAA
GTGATGGCTGACGCCTTGAAGCAATGGTTCGAGCTTCTGGGGCGTGAGTA
AGAAAAATTGAAAAAGTGGGGGCAAAGCTGTATATTTCATCTGTATATGA
CATTTTATCGTCACTGTGGAGAATTTGGGGTCGTGTTGTCCGGAGGGACA
ACTTTGTGGAAGAGTATTTTTGAAAAAGTAAAAAGCCAGATTCATCAAAC
AGATGAACTATGACTATCATTTCTTCCTGTCCTCTTAATATGATTGTCAT
GGAGCAGACTTTAGTTTGGGGGCAACATTTTTTCGCCTCACGTTTATGTC
GCATGGCGCGACAAAAGAAGCATGTCATTACAATCGTGGGGAA

Coding sequence (CDS) from alignment at CM002458.1:1269701..1271543-

>rna2254 ID=rna2254|Name=rna2254|organism=Nannochloropsis gaditana|type=CDS|length=1551bp|location=Sequence derived from alignment at CM002458.1:1269701..1271543- (Nannochloropsis gaditana)
ATGGAGGAGGGCCGTGGGACGTATGAACACGTGCCCAAGGGGGGAGCGGG
GGGAACGACACAGGTGTTGGCGCCCACGGACAAGGAGGAGCAGCTGGAGG
AGCAGCACGAGGAAGGGGAAGGCGGAGGGAAGGAAGGGGAGGAGGAGGAG
GGGGAGGAGGGCCCGTTGGGTGATGAGGATGGAGTGGGCATGGACATGGA
GGACGCCGAGAGGGAAGGGGTCGGGAGGGGAGGGGAGGAAGCCGCGCAGC
CACACGCGCCACAGGAGGCGCCCAAAGCCTCATCCTCCTCCAGTACATCC
GGGTCGCATAAAGCGAGGACCGGGGGGAACAGGGAAGGGAAACGGAGGGA
GGAGGGAGAACACTTGCCTGGCTCGGAAATGAAGGGGAGGGAAGAAGACG
GGAAGGAGGACGAGGTCAGGGATGGGGAGGCATGTGCGAACCAGGAAGGC
GAGAGGGAGGAAGGGGGAGAGGAGGGGGGCGGGAGGATCGTCACCAATCC
AGCCCCCCCTGCGGCAGTGGGGGAGGACGCAGGACCGTCGATCGACCCTT
CTTGCAATGTCCAGGACGGGGAGAAGAAGAGGAAGGAGGAAGAGGAGGAG
GAGGAGGAGGAGGAGGAAGAGGTGCTGGACCTTCGTCGCGGGGTCCAAGG
GCTTTGGCAGGAGCATCCCCACCCCTCCCCTGACGCGGCAGCCAACCTGT
GGGCTCGTTACCGCTCCGCCTCCGCGCCCCTCGCCCTCCGCCTGTGCGAG
CAGCTCCGCCTGGTCCTAGAGCCTCAGGTGGCCAGCAAACTGGGAGGGGA
TTACCGGTCAGGGAAACGGATCAACATGCGTCGAGTGATTCCTTACATTG
CCTCTGGGTACCGCAAGGACAAGATATGGTTGCGACGGACCAAACCGGCG
AAACGCGCGTACCAAGTCTTGCTTGCCATCGACGACTCGGGCTCCATGAA
GCATTTCGGCGCGGAGGACATGGCCTTGACGGCACTGGCGACGCTCGCCT
CGGGGATGTCTGCGCTGGAGATCGGGGAGGTGGGGGTGGCGGCCTTCGGG
GAGACATTGAGCCTATTGCACGGCTTTGGCGAGCCTTGGACGGAGGACGC
GGGGGCGCGCGTGCTGAGTTCGTTCACGTTCGAGCAGGAGGCGACGGACG
GGGCCTTGCTGCTCGAAAGCGTGTCTGCGGCGTTGGAGATGGCGGCGAGG
GGGGCGCGGCAAGCAAGTGCTGCCAGCCAAGGGCCAGGGGCCCCTGCCAA
GATTTTCCAGTTGGTGTTTGTCGTCTCGGACGGCTCTTTCGAGCGAGGGG
ACAAGGCGACGTTGCGGAGGCTGGTACGGCAAATGGGCGAGAAAGGGCAG
CTCCTGGTGCTGCTGATTGTGGATCGGTCAATCGAAGAGCGCCAGGAGGT
TGAGTACTCGGCCACAGGGGGCGTGCGGCTGTCCAAGTATTTGGATTCGT
ATCCTTTCCCGTATTATGTGGTGCTACGAGATGTACAAGCCTTACCAGAA
GTGATGGCTGACGCCTTGAAGCAATGGTTCGAGCTTCTGGGGCGTGAGTA
A

Synonyms

Publications