rna2244, rna2244 (mRNA) Nannochloropsis gaditana

Overview
Namerna2244
Unique Namerna2244
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1447
Alignment locationCM002458.1:1245590..1246149 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102176g1.6584.mrna
Orig protein idgnl|cribi|Naga_102176g1.6584
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1245590..1246149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102176g1gene2146Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2244rna2244-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28437.1cds2236Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2244 ID=rna2244|Name=rna2244|organism=Nannochloropsis gaditana|type=mRNA|length=1447bp
TGGGGGCGGCCGCAGTGTCCGATAGATAGCAAGGGCGCAGGCAAATTCCC
ACTATGGCCCCACTGCGGCGAAAGGCCACATCAATTTGTCAATACCTCTG
CCGTTTCCTGAGTGTCATAATATTGGGCTCCCACACGACATATACATGCC
AGACGGCAATTCCAAAAACAAGAACGCTGTTTTTGTCGCCGTCACGAGCA
TGCGTGGAGCTGCACCATCCGCTTCCTCCCTCCTCTGCTGCGATCTCTCT
TCCTTACGATGGAAGATATAATAAGGTTTTGTCCACTGACAACGCTAAAG
TGCTCCTTTTCGGCCTGACATACGTCAACTCACAAGACAGTACAGCATTG
GAACCCGCCGAGGGTCCCGAAACAGGAGCGGATTACGAAGAAGAAGCGCT
CAGTCCTGAAGCCTTGAGGATCTACTGGGAAGAGGAGAAAGGTCTTTCCC
CGAAGCGCAGTCACTACCTGGTTGTAGCCGCCAAAAAGCACCCTTCCCTC
CGCTATCCCCATACGGTCCTAGAGCCGAGCCTTGCTGCCTTCGGCCGGGC
TTTCCCGGACGTGGCGGTGCCTGATTTGATGTCGCGGTTCCCGGCCCTTC
TCCTCTTGTCTCCTGCCCAAATTCTTGCACGTCTGCGCACCCTCCAACAC
TGCCTCCCTGACCTCCCCCCTCGCCTCCTCGCCACCCGTGCCGCCCCTCT
CCTCTTGCTCCGCCCCGCCGAGGTGCACGCCCGCCTGGACACTTGGCAAT
CCCTCTTTCCTGGTCGCGACACCGCCCGCCTCTGTCGGCGATCGCTCCCG
CTCCTGCTCCTTTCCCCCTCTTGCGCCGAAACGCTGGTCACAGATGCCAT
GGCCCTCCTGCACGCGCATTTAAATCTCTCCTCCACCGCTGCCGTGGACG
TGTTGACGGAAGCGCCCGCCCTGCTCGTGCCCCGGGAGGGCGGAGGTCGA
GGAGGAGGAAGGGGCAGAGGACGAGGGGGAGGAAGGAACGACATGAAAAA
AGTTGAACTGTGCTGGGACGCCGAGCACCTGCAGAACGTGAAGAACCTTC
TGGAAGGCTACGTGCCAGGCGCTTCCCCCGCCAAGCTGCTCCTCGCCTCC
CCCTCCCTGCTCCTTCTCCCTCTGCCCACGCTTGAAGGTCGGCTTCGGGC
AGTGGAGGAGGTAGGCAAGGAGGGTGGGAGGGAGGGCGGGAAGGAGGAGG
TGCGAGAAGGGGAGGGATTGGCCAGGTTACTGACGCTCTGTCCCCGTGTA
TTGAAGGCGGAGGCGGAGGCAGTGAGGAGAGGTGTCCGGTCGATCAGGGC
AGGGCTTGAGGCCGGGGGGGAGGGCGGGGGGGAGGGAGGGGGGAGGGAGT
GGAACAGGGGGAGAACGGGCAGTTGAATGTCCTGCGGCTCGCTACCAAGT
GTCCGACGCTGTTGTTGAAAGCTGTGGAGGGGTTGGATGTGGAAGCG
back to top

protein sequence of rna2244

>rna2244-protein ID=rna2244-protein|Name=rna2244|organism=Nannochloropsis gaditana|type=polypeptide|length=161bp
PLRPHRLLLLRKAPLLLTEDPPSLFRRARQLLSLLGPADALHLARRYPRI
FLKDFARNLTPKGQWLAGALGDPVTLPSLLRTSPQVFFYSSSSLQIKAAR
LRRALPPSLDLLRMLRTFPGLACMDVEKNVLLKIRYLMALFPGREGGRGG
GRRGRRGASRD
back to top

mRNA from alignment at CM002458.1:1245590..1246149+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2244 ID=rna2244|Name=rna2244|organism=Nannochloropsis gaditana|type=mRNA|length=560bp|location=Sequence derived from alignment at CM002458.1:1245590..1246149+ (Nannochloropsis gaditana)
CCCGCTTCGCccgcaccgcctcctcctccttcggaaggccccccttctcc
tcacgGAAGATCCCCCCAGCCTCTTCCGCCGCGCCCGCcaactcctctcc
ctcttgggcCCCGCGGACGCCCTCCACTTGGCCCGGCGGTACCCGCGAAT
TTTCCTCAAGGACTTTGCCCGGAATCTGACGCCAAAAGGCCAATGGCTGG
CCGGGGCCCTCGGAGACCccgtcaccctcccctccctcctccgcacctcc
ccccaagTCTTTTTctactcctcctcttccttgcagATCAAAGCGGCCCG
CCTCCgtcgggccctccccccctccctcgacctcctccgcatGCTCCGGA
CTTTCCCAGGCCTGGCCtgcatggacgtggagaagaACGTGCTCTTGAAG
ATCCGTTACCTCATGGCGCTTTttccagggcgggaaggagggcggggagg
agggaggaggggaagacgaggtgCTTCGCGTGATTGAAAGTGACCCCCGA
GTGTTGGTGCATGGATTTGGGAGGATGTCCCGCGCCGAGTACgtcgtgag
ggagggaggg
back to top

Coding sequence (CDS) from alignment at CM002458.1:1245590..1246149+

>rna2244 ID=rna2244|Name=rna2244|organism=Nannochloropsis gaditana|type=CDS|length=486bp|location=Sequence derived from alignment at CM002458.1:1245590..1246149+ (Nannochloropsis gaditana)
CCGCTTCGCccgcaccgcctcctcctccttcggaaggccccccttctcct
cacgGAAGATCCCCCCAGCCTCTTCCGCCGCGCCCGCcaactcctctccc
tcttgggcCCCGCGGACGCCCTCCACTTGGCCCGGCGGTACCCGCGAATT
TTCCTCAAGGACTTTGCCCGGAATCTGACGCCAAAAGGCCAATGGCTGGC
CGGGGCCCTCGGAGACCccgtcaccctcccctccctcctccgcacctccc
cccaagTCTTTTTctactcctcctcttccttgcagATCAAAGCGGCCCGC
CTCCgtcgggccctccccccctccctcgacctcctccgcatGCTCCGGAC
TTTCCCAGGCCTGGCCtgcatggacgtggagaagaACGTGCTCTTGAAGA
TCCGTTACCTCATGGCGCTTTttccagggcgggaaggagggcggggagga
gggaggaggggaagacgaggtgCTTCGCGTGATTGA
back to top
Synonyms
Publications