rna223, rna223 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna223
Unique Name	rna223
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	834
Alignment location	CM002455.1:559734..562552 +

Link to JBrowse

Properties


Property Name	Value
Product	soluble pyridine nucleotide transhydrogenase
Orig transcript id	gnl\|cribi\|Naga_100100g18.8918.mrna
Orig protein id	gnl\|cribi\|Naga_100100g18.8918
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:559734..562552 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100100g18	gene212	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna223	rna223-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30450.1	cds223	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:559734..562552+
coding sequence from alignment at CM002455.1:559734..562552+

mRNA sequence

>rna223 ID=rna223|Name=rna223|organism=Nannochloropsis gaditana|type=mRNA|length=834bp
ATGAATTCAGATGCGGGTGCAGGCGCCTTGGAGCAGTTCACTATTCTTGC
GAAGAGCGCCAAGGGAAATGCCTGCGTAGCTCTCATTCAGCAGGTGCTAT
CCACTCGTAAAATTGTCGTCTTTGGGGAGCTGTTGGCGATGCCAAATTTG
GAAGCTCTGCGTGGTAGCGAGCACGAGCCTTATTTGAGGCTTTTGGAGAT
ATTTGCCTACGGGACTTACGCCGACTATCAAAGACAACGCGGGACCCTCC
CTCCGCTCACGCCGCCACAGCTTCGCAAACTCCAGCAATTAACTTTGGTG
ACGCTGGCACAGAAACATGAGAATATTCCGTACGCCGTCCTTTTCCGCGA
ATTAGACATGGACGGGGATGTGCGTGAGTTGGAGGATTTGATAATCGAGA
GCATCAACATGGGTCTCCTGACCGGGCGCCTGGATCAACGCGGGGGCCGC
TTTCGGATCAAAGGGGCTATCGGGAGAGACGTGCGCCTGGAGGACATCGA
TGGCATGATGGATAAATTGCAGAAATGGGTCGCGAACGCAGAGACGCTGC
TTACAAGTCTGGAACAGCGCATGAGCGAGATTCACGACGAACGTTGCGAG
CTTGATCAGCAACGACAAGACTATAAAGAGAAACTACAGCACGCCAAAGC
CCATCCTGTCCGGGGAGTGAGGGGAGGAGGAGGCGGAGCCGGTGGGTTTG
GAGGTCTGGACGACGATGACATGGAGAGTTTTCTGACCGCGGGAGCCAGT
GGAGGCCGCAGGAAAGTGGCAAGCGAAGGAAGATACAAGCGAAAAGGTGT
ACGAGAGCCCATGAGCCGCATGCGAAATAAATAA

protein sequence of rna223

>rna223-protein ID=rna223-protein|Name=rna223|organism=Nannochloropsis gaditana|type=polypeptide|length=577bp
MLNSTSTTLRGPFSLLVGRMSLVRRPTLARNGRAFADSSKSTKDEDSGSQ
TTIHPTHSNPKATPGAVNSQKPDFDLMVIGSGPAAQACAISSSRRGKKVA
VIDKPGMLGGVCVNTGTIPSKTFREAVLHLTGYRHQGFYGKSYAPAGRIS
MEGILHRVSMVVKGEKDVMRNRFRQYGISHIYGTAHFTGEEKTVQVTSVA
VEEEERKRKRAVGTAGAGLEVEPFSKPFTTEKALVAVGTTPARRADFDFD
GVHIIDSDDLLSGSLQRVPRELIVVGAGVIGMEYASMFNVIPGTRVTVID
GRPDVLTFADKEIIQSLEYEMRQKGARFLLGEEVLNARVEGDHVVANMAS
GKVLRGDCLLYTVGRQGNTAGLGLDKAGVEVSKRGLMTVNDNYQTSVPWL
YAAGDCIGFPALASTSSQQGRMAAHHMWGGNEGDALKAFGGFPYGIYTIP
EISMVGYTEQQLTQQKIPYEMGVARYDELAKGQMMGGSSGMLKVLFHAET
LKILGVHCMGESATEIVHVGQVAMDMGMDMHFLTENVFNYPTFAESYRVA
AFNGLKRLALAGYTDVSQHQHEGAASP

mRNA from alignment at CM002455.1:559734..562552+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna223 ID=rna223|Name=rna223|organism=Nannochloropsis gaditana|type=mRNA|length=2819bp|location=Sequence derived from alignment at CM002455.1:559734..562552+ (Nannochloropsis gaditana)
TCTCTTTGTTCCGGGCTTGAAGGGGTACGCTGTCACCGTGCATGGAATGA
CTATGCCATTGAGGCCACTTATACATCGCTTTGGATGGTGTGACGATTAT
GGTAGGTTTCGTGGAAACAGCCCTGGCATTCGTGCAATGAGCTTTACAGA
TTCACTCCAAGCCATAACTGCCGCCAAGGCCTGAAATGAGCTGTCATCCA
ACCTCAAAATATGTAATGCGGTAGCAACAATGCCGTGCTAGACCATTCTT
TTAGTAGCGATTGAGTCTGTGCATGGATGAGAATGACTTCATTGCCTGAT
TAAGATCCTTTTGCAGTAGCATACCCCCCTAAAAGTGCTCTGCAAACGCA
TCTctatttcttcctttcaatCCACCTCCAGAGCATTTTCACGGCCCACC
ATGCTAAATAGTACAAGCACCACACTGAGAGggcctttctctcttcttgT
GGGCAGGATGTCCCTCGTTCGCCGGCCAACGCTGGCGCGCAATGGGCGCG
CGTTTGCCGATAGCAGCAAGTCCACGAAGGACGAGGATAGTGGTTCTCAA
ACTACCATCCACCCTACTCACTCGAATCCTAAGGCAACGCCCGGTGCTGT
CAACTCGCAAAAGCCTGACTTTGACTTGATGGTCATTGGATCTGGTCCAG
GTAAGCATCTCCAGTGCGAGGTGGCCGCCCTTCTTGCTTGACCCGTGGTC
GCCGCCTCACTGGGTCACATTAATCCGTTCTCTCCGCCCGCATGTACCGG
ATTGTGTTGCCATATAATGATTGGTTGCCCTTTTTATGCGATCGAACGAA
GCTCTGACTCATTCCTTTTCGCTCCTTGCGTCGTGCTCGTGTGGCAGCCG
CCCAGGCCtgtgccatctcctccagccgTCGCGGGAAAAAAGTGGCCGTG
ATCGACAAGCCGGGCATGTTGGGGGGAGTCTGCGTCAATACGGGAACCAT
TCCCTCCAAAACATTCCGGGaggccgtcctccacctgacGGGCTACCGTC
ACCAGGGCTTCTACGGCAAGTCTTACGCTCCTGCTGGCCGAATCAGCATG
GAGGGGATCCTGCACCGAGTGTCGATGGTGGTAAAAGGCGAGAAAGACGT
GATGCGGAACCGATTTCGCCAGTATGGTATCTCGCATATTTACGGCACAG
CGCACTttacgggggaggagaagacggttCAAGTCACCtccgtggcggtg
gaggaggaggagcgaaaaaGGAAGCGAGCAGTCGGTACCGCAGGCGCGGG
ATTGGAAGTGGAGCCTTTTAGCAAGCCTTTCACCACGGAGAAAgccctgg
tggcggtgggaaCAACGCCAGCACGACGGGCAGACTTCGATTTCGACGGT
GTACACATTATCGATAGCGACGACCTTTTAAGCGGGTCGCTGCAGCGGGT
GCCTCGGGAGCTCATCGTGGTGGGAGCCGGTGTGATAGGAATGGAGTACG
CCAGTATGTTCAACGTCATCCCCGGGACACGTGTCACGGTGATTGATGGC
AGGCCGGACGTGCTCACGTTCGCGGATAAAGAAATCATTCAATCCCTCGA
GTACGAGATGAGACAGAAAGGGGCCCGCTTCTTACTCGGCGAGGAAGTGC
TTAATGCGCGCGTGGAAGGCGACCACGTCGTCGCAAACATGGCGAGTGGG
AAAGTTCTGCGAGGGGACTGCTTGCTGTACACCGTCGGTCGTCAAGGGAA
CACGGCTGGCCTCGGCTTGGACAAGGCTGGTGTGGAGGTTAGCAAGCGAG
GGCTGATGACTGTGAATGACAATTATCAAACATCAGTGCCGTGGCTCTAT
GCCGCTGGGGACTGCATCGGCTTCCCTGCGCTTGCGTCTACGTCCTCACA
ACAGGGGCGAATGGCGGCCCACCACatgtgggggggaaacgagggggatG
CACTTAAAGCCTTCGGGGGGTTTCCCTATGGTATCTACACGATCCCGGAG
ATATCAATGGTTGGGTACACGGAACAGCAGCTTACGCAGCAAAAAATACC
GTACGAAATGGGCGTGGCTCGGTATGACGAACTGGCCAAGGGCCAGATGA
TGggtggcagcagcggcatGCTCAAGGTGCTGTTCCACGCGGAAACGCTG
AAGATCCTCGGCGTCCACTGCATGGGCGAAAGCGCGACAGAGATCGTGCA
CGTGGGCCAAGTGGCGATGGACATGGGGATGGACATGCATTTCCTGACGG
AGAACGTCTTCAATTATCCGACGTTCGCCGAATCATACCGTGTGGCAGCC
TTTAACGGCTTAAAACGCCTGGCCTTGGCAGGGTACACCGACGTGTCACA
ACATCAGCACGAAGGTGCAGCTTCACCGTGAGGTGCCTAAGGTAGGAGGT
AATGTAGAAAACTGGAAATGAAATGGTTTAAGAATGAAAACAGATGCTCT
AAGTCTGtgtggaaagaaaggcacaAGCAAACAGCCGTACAAAGTAAATG
GAAGGTGATATGTTTCCTACACTCCTGCTTCTCTAATCATCACACTGTAT
GAGTTTTTTGGGGCATGATTTTACCTTTTTGGTTACGCAAAAAGCGGCTT
CTATAAAATTTAACTCTGCGATAATTTTCCGTATTTGGACACAAACGTTG
AAATTTTCCGAGACCGCCCCTCTGCATCACGACATTTATCGTGTCGACGA
GCAGAGTCTCCTTCACTTCATGGTCCAATGTGTACTCTCGCgccaaggaa
ggagatgaatTAACCTCCAGCAACCATGGCCGGAGGTCCGAATCTAGTAA
GACATCGAATCCGAATAACTCGAATGTCCCTGGCAGTGGAGGAATAGAAT
CCTCTACGCACACTAAACT

Coding sequence (CDS) from alignment at CM002455.1:559734..562552+

>rna223 ID=rna223|Name=rna223|organism=Nannochloropsis gaditana|type=CDS|length=3468bp|location=Sequence derived from alignment at CM002455.1:559734..562552+ (Nannochloropsis gaditana)
ATGCTAAATAGTACAAGCACCACACTGAGAGggcctttctctcttcttgT
GGGCAGGATGTCCCTCGTTCGCCGGCCAACGCTGGCGCGCAATGGGCGCG
CGTTTGCCGATAGCAGCAAGTCCACGAAGGACGAGGATAGTGGTTCTCAA
ACTACCATCCACCCTACTCACTCGAATCCTAAGGCAACGCCCGGTGCTGT
CAACTCGCAAAAGCCTGACTTTGACTTGATGGTCATTGGATCTGGTCCAG
CCGCCCAGGCCtgtgccatctcctccagccgTCGCGGGAAAAAAGTGGCC
GTGATCGACAAGCCGGGCATGTTGGGGGGAGTCTGCGTCAATACGGGAAC
CATTCCCTCCAAAACATTCCGGGaggccgtcctccacctgacGGGCTACC
GTCACCAGGGCTTCTACGGCAAGTCTTACGCTCCTGCTGGCCGAATCAGC
ATGGAGGGGATCCTGCACCGAGTGTCGATGGTGGTAAAAGGCGAGAAAGA
CGTGATGCGGAACCGATTTCGCCAGTATGGTATCTCGCATATTTACGGCA
CAGCGCACTttacgggggaggagaagacggttCAAGTCACCtccgtggcg
gtggaggaggaggagcgaaaaaGGAAGCGAGCAGTCGGTACCGCAGGCGC
GGGATTGGAAGTGGAGCCTTTTAGCAAGCCTTTCACCACGGAGAAAgccc
tggtggcggtgggaaCAACGCCAGCACGACGGGCAGACTTCGATTTCGAC
GGTGTACACATTATCGATAGCGACGACCTTTTAAGCGGGTCGCTGCAGCG
GGTGCCTCGGGAGCTCATCGTGGTGGGAGCCGGTGTGATAGGAATGGAGT
ACGCCAGTATGTTCAACGTCATCCCCGGGACACGTGTCACGGTGATTGAT
GGCAGGCCGGACGTGCTCACGTTCGCGGATAAAGAAATCATTCAATCCCT
CGAGTACGAGATGAGACAGAAAGGGGCCCGCTTCTTACTCGGCGAGGAAG
TGCTTAATGCGCGCGTGGAAGGCGACCACGTCGTCGCAAACATGGCGAGT
GGGAAAGTTCTGCGAGGGGACTGCTTGCTGTACACCGTCGGTCGTCAAGG
GAACACGGCTGGCCTCGGCTTGGACAAGGCTGGTGTGGAGGTTAGCAAGC
GAGGGCTGATGACTGTGAATGACAATTATCAAACATCAGTGCCGTGGCTC
TATGCCGCTGGGGACTGCATCGGCTTCCCTGCGCTTGCGTCTACGTCCTC
ACAACAGGGGCGAATGGCGGCCCACCACatgtgggggggaaacgaggggg
atGCACTTAAAGCCTTCGGGGGGTTTCCCTATGGTATCTACACGATCCCG
GAGATATCAATGGTTGGGTACACGGAACAGCAGCTTACGCAGCAAAAAAT
ACCGTACGAAATGGGCGTGGCTCGGTATGACGAACTGGCCAAGGGCCAGA
TGATGggtggcagcagcggcatGCTCAAGGTGCTGTTCCACGCGGAAACG
CTGAAGATCCTCGGCGTCCACTGCATGGGCGAAAGCGCGACAGAGATCGT
GCACGTGGGCCAAGTGGCGATGGACATGGGGATGGACATGCATTTCCTGA
CGGAGAACGTCTTCAATTATCCGACGTTCGCCGAATCATACCGTGTGGCA
GCCTTTAACGGCTTAAAACGCCTGGCCTTGGCAGGGTACACCGACGTGTC
ACAACATCAGCACGAAGGTGCAGCTTCACCGTGAATGCTAAATAGTACAA
GCACCACACTGAGAGggcctttctctcttcttgTGGGCAGGATGTCCCTC
GTTCGCCGGCCAACGCTGGCGCGCAATGGGCGCGCGTTTGCCGATAGCAG
CAAGTCCACGAAGGACGAGGATAGTGGTTCTCAAACTACCATCCACCCTA
CTCACTCGAATCCTAAGGCAACGCCCGGTGCTGTCAACTCGCAAAAGCCT
GACTTTGACTTGATGGTCATTGGATCTGGTCCAGCCGCCCAGGCCtgtgc
catctcctccagccgTCGCGGGAAAAAAGTGGCCGTGATCGACAAGCCGG
GCATGTTGGGGGGAGTCTGCGTCAATACGGGAACCATTCCCTCCAAAACA
TTCCGGGaggccgtcctccacctgacGGGCTACCGTCACCAGGGCTTCTA
CGGCAAGTCTTACGCTCCTGCTGGCCGAATCAGCATGGAGGGGATCCTGC
ACCGAGTGTCGATGGTGGTAAAAGGCGAGAAAGACGTGATGCGGAACCGA
TTTCGCCAGTATGGTATCTCGCATATTTACGGCACAGCGCACTttacggg
ggaggagaagacggttCAAGTCACCtccgtggcggtggaggaggaggagc
gaaaaaGGAAGCGAGCAGTCGGTACCGCAGGCGCGGGATTGGAAGTGGAG
CCTTTTAGCAAGCCTTTCACCACGGAGAAAgccctggtggcggtgggaaC
AACGCCAGCACGACGGGCAGACTTCGATTTCGACGGTGTACACATTATCG
ATAGCGACGACCTTTTAAGCGGGTCGCTGCAGCGGGTGCCTCGGGAGCTC
ATCGTGGTGGGAGCCGGTGTGATAGGAATGGAGTACGCCAGTATGTTCAA
CGTCATCCCCGGGACACGTGTCACGGTGATTGATGGCAGGCCGGACGTGC
TCACGTTCGCGGATAAAGAAATCATTCAATCCCTCGAGTACGAGATGAGA
CAGAAAGGGGCCCGCTTCTTACTCGGCGAGGAAGTGCTTAATGCGCGCGT
GGAAGGCGACCACGTCGTCGCAAACATGGCGAGTGGGAAAGTTCTGCGAG
GGGACTGCTTGCTGTACACCGTCGGTCGTCAAGGGAACACGGCTGGCCTC
GGCTTGGACAAGGCTGGTGTGGAGGTTAGCAAGCGAGGGCTGATGACTGT
GAATGACAATTATCAAACATCAGTGCCGTGGCTCTATGCCGCTGGGGACT
GCATCGGCTTCCCTGCGCTTGCGTCTACGTCCTCACAACAGGGGCGAATG
GCGGCCCACCACatgtgggggggaaacgagggggatGCACTTAAAGCCTT
CGGGGGGTTTCCCTATGGTATCTACACGATCCCGGAGATATCAATGGTTG
GGTACACGGAACAGCAGCTTACGCAGCAAAAAATACCGTACGAAATGGGC
GTGGCTCGGTATGACGAACTGGCCAAGGGCCAGATGATGggtggcagcag
cggcatGCTCAAGGTGCTGTTCCACGCGGAAACGCTGAAGATCCTCGGCG
TCCACTGCATGGGCGAAAGCGCGACAGAGATCGTGCACGTGGGCCAAGTG
GCGATGGACATGGGGATGGACATGCATTTCCTGACGGAGAACGTCTTCAA
TTATCCGACGTTCGCCGAATCATACCGTGTGGCAGCCTTTAACGGCTTAA
AACGCCTGGCCTTGGCAGGGTACACCGACGTGTCACAACATCAGCACGAA
GGTGCAGCTTCACCGTGA

Synonyms

Publications