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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100636g4.7280.mrna |
| Orig protein id | gnl|cribi|Naga_100636g4.7280 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:1216116..1218216 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2229 ID=rna2229|Name=rna2229|organism=Nannochloropsis gaditana|type=mRNA|length=3057bp
TCAAGTTCGGGGCGCCTCAACATACACATGAACCCGGTGGCTCGCGTATA
TCAGTCCGTGAGGGTTCAGGAATGCAAAAGAAAGCAAAGCAACCCCTAAA
TCCGAGGCCGGGCTCACCCTCGCGCATCAGGGAAACACGCACAACAGGTC
CATATTCCAACTACGTCTGTATGCCCTGCCTGGTGCACGTCCACCTGGTC
TCTACGTCTTTTTATTTCCACATCTTGTGGACCACCCCGACGGCTCATAT
TTCTCAGGCAGGCCATAGCCCCAGCAAGCTCGGAACGCCTTTTAAAAAAT
GATGCTCCACGCTTCCGGGGACCAATTACCGTGGTTGCGGCCCCCCAACC
CGCCAATTGACTTGCGCACAAAATTATTGTTGCTGTGATTTGGTGGTTTG
CGAACCTGGGCGACGCGTTTTTGTGGACGAGATGTGGTCTTGGAAGGCTG
TGGTTCAAGAAGGTTGGGGTTGAAGCACTCCTCTCAACATACGCCCATCG
TTCTTTTCCTTCTTTTTTTGCTGCCACGCGCCCCAGCCTTCGTCTACACT
AGATTGCGATGGCAGACTCGACAGAGGAGCAATCGTCTTCACCTTCCAAG
GCGCCGTATCCGCCGCCGCGGCCCCCGCGTGCTGGCGGCATCAAAGGCAC
AAGTCCCTTCTATTCCATCAGTGACAACAGCACAGGGGCCGAGACCAGCG
GAACGGCCAAGACAACCACGGACAGCAACGCCATGGAACATAATGCCCGC
GGGATGACCGCGAAGCATCACAGTGCCAAAAGACCTTCGTCTGTCTCCAG
CCACAGTGGCAAATCCTCACGGGGACCATCTCCCTATCCTGGCCGCACGT
CCGAGAGCCGCGCTGGCCTCCTCTACCACCAAAACGTCGCACAAAACGTC
AGCGAAAGCATGGAGGAAGTCACAGGCCTTCGGCGTCGGCATCCGGCGGC
CTCGGAACGCGCGCCGTCCCCAGAACGTGACGGTGTGCACGCGCAGGGGG
CGGACCGACGGCGTAGCTCCACTCCAGGAGGGGGGCCTTCCGTGCTGGGA
GCATTGGGTCGCGGAGTCCTAGGGGTGAGCAAATGGACTCTAGGCTCCTT
GTCCAACCAATTGGGCCCTCCATTTGCTTGGGCGGAGTTTATGTTTGCCT
GGGTGCGGGAGGTGACCCCTCCCCGATTGAAGCGCCTCGCCATTATCTTT
TGGGATGCTGGTGCCCACATCACGAAGCTGGCGTACACTTCTGGCGGAGA
AGAATTGGGTTTTGCCGCTCGAAACGTGATCGACGGGTTGGTGGAGACGA
TCGCGGCACCTAAAGGCCGAGCATTTGTATTGGAAGGAGGGATGACCTTT
GTGAAATTCGCCGAGGCGGTGGACACGCCGGAAATGCACGCCGCCATCAC
GCAAGGCTTCAAGCTGGGCTCCCGGGGCCTTGAAGTATTGGCCACAGAGC
AAGCCAAGGACTTCCTCTCCAACGTGTCGGATTTCCTCTCGCGCCTGGTG
CGCCTGGCGAATGCCCCCGAAACCACCCTGGCCGTGGCAGAATTCGTGAC
TGTGGTGTGTCATGCCTTGGCTCAAGAAAACGCCGCTTACAGCCGGGAAC
GGGTCTCCCAGCTCTCGCCGTTCGAAGGGGCGGGAGAGGGAGGGGAGGAG
GAGGGAGAGGAGGGAGAAAAGGGAGGGGAGGGCCCGGTGAAGGAGGGGGG
AAAGAAGAAAAAGAAGGGCATGCGCATTGTGAAAAACGAAGACGGAGAGA
GGCTGGAATGGGATGAGGACTTGGTATTGGGTCGGAAGGGTGGGAGGGAG
GAAGAGGGGGAGGAAGGGAAGGAAGCAGGGGACGAGAGCGGTACTACTGC
GTCGAGTGACACCCCATCCTCGTGGGCGAAGGCGGGAGGCGAGGGCGAGC
GGGAGGGCGAGCGGGAGGCGGGGGGAGGGGTGGAAGGCGACCTGCTCCCG
ATCCAGGACGGGGAGATGGAGGACATGCTGGGGGCGCGGTGGGGCGGACG
AGGGGAAGGGAGGCTGGGCCGAGTAGGTGCAGACAAGGCCTCGACGGTGA
AGGGCTTGGTGGAGGCGATCTTGGATGAGAAGCGCGCGGCCGCGGAAGCC
AGGACAGGAGGCGGGGTCGGGGTCCAGTACAAGACCGAGCAGGAGCGTGC
CGCCCGTTGTGCCTTGTCCTTCTTGTTTTTCATCACCTACACATTTTTTG
CCCTCATTGGGATCCGGGCCTCCATCGGAAGCTTGACTGCCGCTGTGGGG
GGATACAAGAGGGGATGAGGGAGGCATACGGGCGGAGTAAGGAAAACGAG
ATGGAGCTGGCGCGAGCGAAAAGGGAGGCAGTGGTTGGGAGGGGATTTTT
GGTCAAACTACGTGCTTGTAACATGGTAGCCTGGCGTCATCCCTCTGGTT
TAGTATCCAGGGGGGTTGGGGATTTCTGGCGAGGGTTGCCTCGGATAGCG
CTAGGCAAGGACAGAGAGGAGGACACCGGGCGAAGGCGTTAGAGAGGGGT
CGGGATGGGAGTTTGGACCCTGTGTAGAGGGAGGCCGCCGGGCACGGATA
CGATACGATAGGTCGTGGATTGGGGAGGTAGTCTGGAGGCGGGGGAGGAC
GGCTGCGATTGGATGGGGAAATTTTGACGAGACAGGCTTGTGAAATATTA
GGTAAGAAGGAAAGGGTCTCTTGGTCGTCCGGAGCGGCGGGGACAGCGTA
AAAATTCTGAGAAAGGAGATTGACGGTCGATGACGATCCAAGAATGGCGA
AGTTGTGTCCGTTTCTTTGTCCCTCAGGAGCCACGCGCGTTTTTTTAAAA
TGTGCAAGGTCATCGATTTCCATATCAAAAGAAAATGGCTGACGTACTGC
CTGAAATGTCACATTCGGAGGACAATGGGGAAAGGGCTTTGTGCTGTCCA
CAAATCAACTTGAGATATGTGTCATTGATACGGTGAGACATACAATTCAA
TTCTGCGACCGATTTTGCTTCAAATGGTATTATCACTTACGACTACTGGT
CGGACTCTTTTCGCATGATATCTCACGTGTATGATGACGGGAAACAAAAT
AATAGGT back to topprotein sequence of rna2229 >rna2229-protein ID=rna2229-protein|Name=rna2229|organism=Nannochloropsis gaditana|type=polypeptide|length=697bp
MTSTATTLATCAHQPPTSYTPVTAFTDFETSGGEAAGPWGEGAEQQHFPD
DCGSESSTALRASHAPSQPTAPQEISSKGRTTTDDNSVATASHVASSSLP
STASVNNPNDHEEGPQQEPIARPHGHSDTGPLDSDSCASRTSSTSADLVS
DVHVPPAVLEKLLRRLECLEAQMGRRQRREEEETPCSHSRRARPQRPRLH
DPSRSSFGARLASRPLSLQTADSFLELQSATVRAKNVGRSHPAWPLLRSL
DTIDLPDSARNSPTHSTASSSRSTGSGRFGAGGEAGGEEGSEGDGEKKCM
LSSSSSSSHSEEAEEEEEEEQADVVEEEEEEEELEEEEEEEEVEVEEKEE
EEEKVRITSFVQKEEEIRERMEEEVGKEEGTKEATGVQESETTLKEADTG
IGGGLGLVEGSVEWRQRRRKLSLPEGLLGKAGPALAKARRDVAPLGGAEQ
GVGKEKEARKPAAGGTDVANKGGAAVADAPCRYTRTEEGGKDEGKGIYPV
AQDTATLCPLPPIPSSSSSSPLPRPGEAPPPSLPPSSLSTTRRRRSNSTH
SDTIRHRRHHHHHSLACKGGAALLSPPSTPTHSSSTGSWPGLPPAATRGK
AAFSLLPSLPASLQSFRVYVWHEVFGAQHYYGNDEDAAEVTAKADGVVQN
FLHVPAQLEECLAFGLVVCIDAFLYALTVLPLRVTAALGRLLTARYG back to topmRNA from alignment at CM002458.1:1216116..1218216+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2229 ID=rna2229|Name=rna2229|organism=Nannochloropsis gaditana|type=mRNA|length=2101bp|location=Sequence derived from alignment at CM002458.1:1216116..1218216+ (Nannochloropsis gaditana)
ccccctaaaAGATGACAAGCACCGCGACCACATTGGCAACTTGCGCTCAT
CAACCACCCACATCCTACACTCCAGTCACGGCGTTCACAGATTTTGAGAC
CTCCGGCGGGGAAGCCGCTGGGCCTTGGGGCGAGGGCGCTGAGCAACAAC
ATTTCCCCGACGACTGTGGATCAGAgtcctccactgccttgcGTGCCTCC
CATGCCCCATCACAGCCGACTGCTCCTCAAGAAATCTCCAGCAAGGGTCG
CACAACAACCGATGACAATAGTGTCGCCACCGCCTCGCACGTGGCGTCGT
CATCTTTGCCTTCCACGGCTTCCGTGAACAACCCTAACGACCACGAGGAA
GGACCACAGCAGGAGCCCATCGCACGTCCTCATGGGCATAGCGATACTGG
CCCGTTGGACAGCGACAGCTGCGCCTCGAGGACTTCTTCTACGAGCGCGG
ATTTGGTCAGCGACGTGCACGTGCCTCCCGCCGTGTTGGAAAAGTTATTG
CGACGGCTCGAGTGTTTAGAAGCGCAAATGGGCCGGAggcaaaggcggga
ggaggaggaaaccccCTGTTCACACTCTCGGCGGGCGCGGCCGCAGCGTC
CCCGACTCCACgatccctctcgctcctccttcggcgCTCGTCTTGCCTCC
CGCCCATTGTCCTTGCAGACAGCAGACTCCTTCTTGGAGCTGCAGTCCGC
GACTGTGCGGGCCAAGAACGTCGGGAGGAGTCACCCCGCGTGGCCTTTGC
TTCGAAGCCTCGACACGATCGATTTGCCCGACAGTGCCCGAAACTCGCCC
ACGCATAGCACGGCCAGCAGCAGTCGGAGCACAGGGAGCGGGCGTTTTGg
cgcgggtggggaggcggggggggaggaagggagtgagggggacggagaaa
agaagtgcatgctttcctcctcctcctcctcgtcacactcagaggaggca
gaggaggaggaagaggaggagcaggctgatgtggtcgaggaggaggagga
ggaggaggagttggaggaggaggaggaggaggaggaggtggaggtggagg
agaaggaggaggaggaggaaaaggtacGGATTACGTCGTTTgtgcagaag
gaagaggagatcagggagagaatggaggaagaagtggggaaggaagaggg
aacgaAGGAAGCCACAGGAGTGCAGGAGAGCGAAACGACtttgaaggagg
cggacacGGGCATTGGAGGGGGATtggggctggtggagggaagcGTGGAA
TGGCGGCAGCGCCGGCGAAAGCTTTCTCTCCCCGAAGGGCTACTAGGAAA
GGCGGGCCCAGCCCTGgcgaaggcaaggagggacgtGGCGCCCCTAGGAG
GTGCGGAGCAGGgcgtgggcaaggagaaggaagcgaggaagccGGCGGCC
GGTGGGACCGACGTTGCCAACAAAGGGGgcgccgccgtcgccgaCGCTCC
GTGCCGGTACACGAGgacggaagaaggggggaaggatgagggaaaaggca
tcTACCCGGTCGCGCAGGACACGGCCACGCtctgcccgctccctccgatt
ccttcctcctcctcctcctcgcccctcccgcggccgggggaggcgccccc
gccgtctttgcccccgtcctccctctccaccacccgaCGCCGGCGGAGCA
ACAGCACGCACAGCGACACGATCCGGCATCgtcgccatcaccaccatcat
TCTTTGGCCTGCAAAGGAGGTGCTGCGctcttgtcccctccctctacccc
gACacactcttcctccaccggctcctGGCCTGGTTTGCCGCCGGCGGCCA
CGCGGGGAAAGGCAgcgttttccctccttccctccctcccggcttcCCTC
CAATCATTCCGGGTCTACGTCTGGCACGAAGTCTTCGGCGCCCAGCATTA
CTACGGcaacgacgaggacgccgcGGAGGTAACCGCCAAGGCGGACGGGG
TGGTGCAAAACTTCTTGCACGTCCCTGCGCAATTGGAGGAATGCTTGGCT
TTTGGTCTTGTGGTCTGCATCGACGCCTTCCTCTACGCCTTGACCGTCTT
GCCCTTGCGGGTCACGGCGGCCTTGGGGCGGCTCCTGACTGCCAGGTACG
G back to topCoding sequence (CDS) from alignment at CM002458.1:1216116..1218216+ >rna2229 ID=rna2229|Name=rna2229|organism=Nannochloropsis gaditana|type=CDS|length=2090bp|location=Sequence derived from alignment at CM002458.1:1216116..1218216+ (Nannochloropsis gaditana)
ATGACAAGCACCGCGACCACATTGGCAACTTGCGCTCATCAACCACCCAC
ATCCTACACTCCAGTCACGGCGTTCACAGATTTTGAGACCTCCGGCGGGG
AAGCCGCTGGGCCTTGGGGCGAGGGCGCTGAGCAACAACATTTCCCCGAC
GACTGTGGATCAGAgtcctccactgccttgcGTGCCTCCCATGCCCCATC
ACAGCCGACTGCTCCTCAAGAAATCTCCAGCAAGGGTCGCACAACAACCG
ATGACAATAGTGTCGCCACCGCCTCGCACGTGGCGTCGTCATCTTTGCCT
TCCACGGCTTCCGTGAACAACCCTAACGACCACGAGGAAGGACCACAGCA
GGAGCCCATCGCACGTCCTCATGGGCATAGCGATACTGGCCCGTTGGACA
GCGACAGCTGCGCCTCGAGGACTTCTTCTACGAGCGCGGATTTGGTCAGC
GACGTGCACGTGCCTCCCGCCGTGTTGGAAAAGTTATTGCGACGGCTCGA
GTGTTTAGAAGCGCAAATGGGCCGGAggcaaaggcgggaggaggaggaaa
ccccCTGTTCACACTCTCGGCGGGCGCGGCCGCAGCGTCCCCGACTCCAC
gatccctctcgctcctccttcggcgCTCGTCTTGCCTCCCGCCCATTGTC
CTTGCAGACAGCAGACTCCTTCTTGGAGCTGCAGTCCGCGACTGTGCGGG
CCAAGAACGTCGGGAGGAGTCACCCCGCGTGGCCTTTGCTTCGAAGCCTC
GACACGATCGATTTGCCCGACAGTGCCCGAAACTCGCCCACGCATAGCAC
GGCCAGCAGCAGTCGGAGCACAGGGAGCGGGCGTTTTGgcgcgggtgggg
aggcggggggggaggaagggagtgagggggacggagaaaagaagtgcatg
ctttcctcctcctcctcctcgtcacactcagaggaggcagaggaggagga
agaggaggagcaggctgatgtggtcgaggaggaggaggaggaggaggagt
tggaggaggaggaggaggaggaggaggtggaggtggaggagaaggaggag
gaggaggaaaaggtacGGATTACGTCGTTTgtgcagaaggaagaggagat
cagggagagaatggaggaagaagtggggaaggaagagggaacgaAGGAAG
CCACAGGAGTGCAGGAGAGCGAAACGACtttgaaggaggcggacacGGGC
ATTGGAGGGGGATtggggctggtggagggaagcGTGGAATGGCGGCAGCG
CCGGCGAAAGCTTTCTCTCCCCGAAGGGCTACTAGGAAAGGCGGGCCCAG
CCCTGgcgaaggcaaggagggacgtGGCGCCCCTAGGAGGTGCGGAGCAG
GgcgtgggcaaggagaaggaagcgaggaagccGGCGGCCGGTGGGACCGA
CGTTGCCAACAAAGGGGgcgccgccgtcgccgaCGCTCCGTGCCGGTACA
CGAGgacggaagaaggggggaaggatgagggaaaaggcatcTACCCGGTC
GCGCAGGACACGGCCACGCtctgcccgctccctccgattccttcctcctc
ctcctcctcgcccctcccgcggccgggggaggcgcccccgccgtctttgc
ccccgtcctccctctccaccacccgaCGCCGGCGGAGCAACAGCACGCAC
AGCGACACGATCCGGCATCgtcgccatcaccaccatcatTCTTTGGCCTG
CAAAGGAGGTGCTGCGctcttgtcccctccctctaccccgACacactctt
cctccaccggctcctGGCCTGGTTTGCCGCCGGCGGCCACGCGGGGAAAG
GCAgcgttttccctccttccctccctcccggcttcCCTCCAATCATTCCG
GGTCTACGTCTGGCACGAAGTCTTCGGCGCCCAGCATTACTACGGcaacg
acgaggacgccgcGGAGGTAACCGCCAAGGCGGACGGGGTGGTGCAAAAC
TTCTTGCACGTCCCTGCGCAATTGGAGGAATGCTTGGCTTTTGGTCTTGT
GGTCTGCATCGACGCCTTCCTCTACGCCTTGACCGTCTTGCCCTTGCGGG
TCACGGCGGCCTTGGGGCGGCTCCTGACTGCCAGGTACGG back to top
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