rna2227, rna2227 (mRNA) Nannochloropsis gaditana

Overview
Namerna2227
Unique Namerna2227
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length664
Alignment locationCM002458.1:1210890..1212237 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100636g1.7281.mrna
Orig protein idgnl|cribi|Naga_100636g1.7281
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1210890..1212237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100636g1gene2130Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28453.1cds2219Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2227rna2227-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2227 ID=rna2227|Name=rna2227|organism=Nannochloropsis gaditana|type=mRNA|length=664bp
ATGGCAGACGTACCAGCGGGCCATGGAGGCGAAGAGACACCGGGTGGAAG
ATGGACTGGGCTTCGGCCGGGGGGAAGGCAGCGGGGGAAGGAGTTAGGGG
AGGAGGAGGGGAAAGGAGGAGGGAAAGAGGGGGGGAGGGAGGGAGGAGAG
GATGGTGGGAAGGACGTGGCCAGAAAGTACCCCTTACAACCGCCAGGGGC
CTCCCTGCCCTTCATGGTCACCCGAGACATGCGCCGGGCCCTGATCGAGG
ACATGAACTACTCGAGGAAGGAAGTGGACAGGATGAAGCCCGAACAGGCA
TGGGCCGTGATCCAGAGCGGCGTGAAGAAGGCCCCGAAACCTCGCAGGCT
TGCCCCGTACCCGCCGCTCGACTTGGCGCCGGTGTTGGACCGGGAGGAGG
AAGGCGGGGAGGAGGGCGGGAAGGAGGGGGAGGTGATTGAAGTTTCCTCT
TCGTCAGCATAGCCGTGTGGAGTGGGAGTCCTGACGGGAAAACTCTGCGG
AAGTTCTTTCCCCACAAGGTCATGAAGAAGCGACTTAGCCAAGTTGTGTG
CGTGGAAGGCGAAGCATTGGACATATCTCCGCAAGCTGGCTTCGGTCGAG
GAACGACAGAAGGTGCAACACGGGTGCTTTTTTAAAGAAAAAATCACAAA
TCAGGAGGCAGACG
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protein sequence of rna2227

>rna2227-protein ID=rna2227-protein|Name=rna2227|organism=Nannochloropsis gaditana|type=polypeptide|length=359bp
MRRGRCRIHALVSHCFSVLLITFVLQALLEQNGGNDQNPFNVHAFQIPTR
TQLNSKPERQPSSRAHHTALSSSPFDDFFLLDDPFHQRRPSPPPPSSTAG
SLPPGTHVHIADLQGPGLVMGRDADGQYVLQCHVAGQSMPVLVRRPASQL
YVRGPDDTRPDRAPTTPSSSSFPSSPITSATRPESASLDQAQRREEAGGE
GRGSYRVLHDPKTGKTYAIYHTSPRPRFQGSTGSRPLAQKRVRLSPGREE
LRDFFLSRQGPGGPMANTATMSSTPSSPLSYPRPPLPSSEGVYSPSVSWE
GLRRTGLPRPTACFIRCVLPRVHARLLPFLPFLHLLFPFGRAIPSAVSLS
GGLFSAWGT
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mRNA from alignment at CM002458.1:1210890..1212237-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2227 ID=rna2227|Name=rna2227|organism=Nannochloropsis gaditana|type=mRNA|length=1348bp|location=Sequence derived from alignment at CM002458.1:1210890..1212237- (Nannochloropsis gaditana)
AGGCAAATGTATCGATGCTAGCTATAAGAGCTTCTCACGAGCCAACGACA
TCATACTACTACCTTTTTCACACTTTGTAGCAGCATGCGTCGTGGCAGAT
GCCGCATTCACGCCCTCGTGTCACATTGCTTTAGTGTGCTGCTCATCACC
TTCGTGCTTCAAGCCCTTCTGGAACAAAATGGGGGGAATGATCAGAATCC
CTTTAACGTCCACGCTTTCCAAATTCCGACGCGTACACAATTGAATTCCA
AGCCTGAACGACAACCAAGCTCCCGGGCCCACCATACTGCTTTGAGTTCG
TCGCCTTTTGACGATTTTTTTCTCTTGGATGACCCCTTTCACCAGCGTCG
TCCCTCCCCTCCTCCTCCCTCCTCTACGGCGGGCAGTCTCCCTCCGGGAA
CTCACGTCCATATCGCGGACCTCCAAGGCCCCGGGCTGGTGATGGGGCGG
GACGCGGATGGACAGTACGTGCTGCAGTGCCACGTGGCGGGCCAGTCCAT
GCCGGTCCTGGTGCGTCGTCCTGCCAGCCAACTGTATGTCCGGGGTCCTG
ACGACACGCGACCGGATAGGGCACCTACTACTCCTTCTTCTTCCTCTTTC
CCGTCCTCACCCATCACCTCTGCCACCCGTCCCGAATCTGCGTCTCTGGA
CCAAGCGCAGCGTAGGGAGGAGGCGGGAGGGGAGGGGAGGGGCAGCTACC
GTGTGCTCCACGACCCGAAGACTGGCAAGACCTACGCGATCTACCACACA
TCACCCCGCCCTCGTTTTCAGGGTTCTACAGGTTCCAGGCCTCTGGCGCA
AAAGCGCGTGCGTTTGTCGCCTGGCCGGGAGGAACTTCGTGACTTCTTCC
TCTCTCGGCAGGGTCCCGGGGGTCCGATGGCAAATACTGCGACCATGTCC
TCGACCCCTTCCTCCCCCCTGTCCTACCCCCGCCCCCCCCTTCCCTCGTC
CGAGGGAGTCTACTCGCCCTCCGTTTCCTGGGAGGGACTTCGCCGCACAG
GCTTACCAAGACCAACTGCATGCTTTATCCGCTGCGTCCTCCCCCGCGTC
CACGCCCGCCTCCTCCCCTTCCTCCCCTTCCTCCACCTCCTCTTCCCCTT
CGGACGCGCAATACCGAGCGCTGTGTCGCTTAGCGGAGGTCTATTCTCTG
CATGGGGAACCTGAAGCAACCCTTTTGTATCTCCGCAGTGCGGAGACGCT
AGACTCGAACCGTTTCTCAAAGGACGTGGAGGCGTTAAGCAGGCTGGGGG
AGGCACAACACCGCCTGGGACAATTAAAAGGCGCACGGAGGACGTACCAA
CGCGTGGTTCACCTGCAAGAAAGCGAACGGAAGGAGGGAGGGAGGGAG
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Coding sequence (CDS) from alignment at CM002458.1:1210890..1212237-

>rna2227 ID=rna2227|Name=rna2227|organism=Nannochloropsis gaditana|type=CDS|length=1080bp|location=Sequence derived from alignment at CM002458.1:1210890..1212237- (Nannochloropsis gaditana)
ATGCGTCGTGGCAGATGCCGCATTCACGCCCTCGTGTCACATTGCTTTAG
TGTGCTGCTCATCACCTTCGTGCTTCAAGCCCTTCTGGAACAAAATGGGG
GGAATGATCAGAATCCCTTTAACGTCCACGCTTTCCAAATTCCGACGCGT
ACACAATTGAATTCCAAGCCTGAACGACAACCAAGCTCCCGGGCCCACCA
TACTGCTTTGAGTTCGTCGCCTTTTGACGATTTTTTTCTCTTGGATGACC
CCTTTCACCAGCGTCGTCCCTCCCCTCCTCCTCCCTCCTCTACGGCGGGC
AGTCTCCCTCCGGGAACTCACGTCCATATCGCGGACCTCCAAGGCCCCGG
GCTGGTGATGGGGCGGGACGCGGATGGACAGTACGTGCTGCAGTGCCACG
TGGCGGGCCAGTCCATGCCGGTCCTGGTGCGTCGTCCTGCCAGCCAACTG
TATGTCCGGGGTCCTGACGACACGCGACCGGATAGGGCACCTACTACTCC
TTCTTCTTCCTCTTTCCCGTCCTCACCCATCACCTCTGCCACCCGTCCCG
AATCTGCGTCTCTGGACCAAGCGCAGCGTAGGGAGGAGGCGGGAGGGGAG
GGGAGGGGCAGCTACCGTGTGCTCCACGACCCGAAGACTGGCAAGACCTA
CGCGATCTACCACACATCACCCCGCCCTCGTTTTCAGGGTTCTACAGGTT
CCAGGCCTCTGGCGCAAAAGCGCGTGCGTTTGTCGCCTGGCCGGGAGGAA
CTTCGTGACTTCTTCCTCTCTCGGCAGGGTCCCGGGGGTCCGATGGCAAA
TACTGCGACCATGTCCTCGACCCCTTCCTCCCCCCTGTCCTACCCCCGCC
CCCCCCTTCCCTCGTCCGAGGGAGTCTACTCGCCCTCCGTTTCCTGGGAG
GGACTTCGCCGCACAGGCTTACCAAGACCAACTGCATGCTTTATCCGCTG
CGTCCTCCCCCGCGTCCACGCCCGCCTCCTCCCCTTCCTCCCCTTCCTCC
ACCTCCTCTTCCCCTTCGGACGCGCAATACCGAGCGCTGTGTCGCTTAGC
GGAGGTCTATTCTCTGCATGGGGAACCTGA
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Synonyms
Publications