rna2218, rna2218 (mRNA) Nannochloropsis gaditana

Overview
Namerna2218
Unique Namerna2218
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2826
Alignment locationCM002458.1:1190109..1190823 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100190g1.3115.mrna
Orig protein idgnl|cribi|Naga_100190g1.3115
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1190109..1190823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100190g1gene2121Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28464.1cds2210Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2218rna2218-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2218 ID=rna2218|Name=rna2218|organism=Nannochloropsis gaditana|type=mRNA|length=2826bp
GATGATGGAAGGCACTAGCAACGCAACTAGCAATTAGTGTTATTAGTTGT
GTATCCACGCTTTGGGCAAGTAGCTGATGTCAAAATTTTCACTAAAAATC
ACATCTTGTACCAATACAAGCAGGGTTATGGTTTTTGGTGCTAAACACAC
ACCGTTTCATTCCCTGTCGTACTTGACAGGCAACGTCAACTGAGAAGGAG
CCTTGGGCGAAATATGCCACTGCTTGCGTGCTTCGCTACTATCCATCACG
CCCAATAGCAAAATTACGACTATTAAATGTGATGCATCCTCCCTACAAAA
AGATCCCCATCCGCTTGGACCATGGAGGCAACGTCCTCCTTTCCCTCTGC
GAGCTCACGCCGATGGAGCGCTGGCAAGGTTATGGTGTCTTTCCAACCAA
AGTGGTCTTGCACGTGATCCTCTTGGTGCTTACCACAGCCGCCGTATTAC
ACGACGCCGCACGCTGGAGCCCTTACCGTCTCGCAAGTCAAGCATCTGCG
TGTCATTTTTTCGCTCCCGCTCCCTGTGCAGCCAAGATGTGTGGGGCTTC
TCCTACTGTAAGCTACGGTTGGGACAATTGGAGCAACTGCTTCATATTCT
CGACAGATGAACTGTATGCAGCGGTGCGGGGGGTAGTTTACAATTATTTC
CACATCGAAGACATTGCGCTGGCGAATTATGGAGTAATGAGGATGGCGGC
GGGTGAAGTGGACGATTCTGCGGGCACATCGGCAATCAACGTGGACGGTC
ACAACGCCCCACGACGCACGAATCATTCGGAGAAACTGATTCCTCGCCCA
CCTTTGCTGACGGCATCACTGCAAAGCAGCACCAATGATTCGGAGCACCA
CTACCATCGTCAGTACCCGCTGACCCTTGCGGACCTGGGGCCCTTGGATA
CACGCAAGAATACTCCCGCAGCTGTCGAGGACTTCGTCGCCCGCCTGCTT
ACCTTGGCCATAGACCTGGAGCTCACGGACGAACTGGCGGAAGACGGCGC
CAATGTCTGCTACCTCTGGCATGTCCGGGTCCTGTATGACATTCGGAACA
AAGCAGAAATCGCAGTCAGTCAGAAGACTTACATTCGGGCCTTTTGCGAT
GCTTTACCCAGAAAAGGAGGCGACCAGCCCGGGCGTATGGACGGAAATCG
ACAGGTCTTTCAAGCGCGCCGTCTCATCCAGGGGACGCAAACGTTTCTGG
GCGAAAGCCTGGGGTCAGACGGGGGGCGGCGGCAGGCCTTATTTCCCTTT
ATCCACCCTCTTTGGACCTCCACGGTGCATGTGGACAGACAGGCATACGT
GCTCAGCGCAGGTATTCTGGGGATAAGCCTCTGGCTCGTTGTTTTCCTCC
TGTGCGAGCTCTACGGCTCTTGTTGCATCCTGCGCCGGGCGCGGGCCCTC
GTAGGCATGGGCCGCCGCGTCTCCTACCAGGGACTTCTCCCTCCGGGGCG
CACCCGCAGCACCGACAGCCTGGCCAGCCTGGGGAGCCGAAGTACGGCCT
GGAAAAGGGGCTTGGACTGGGACCGCGACGTGCACCTGAGCACCAAGTTC
CATTTCGTCTCGTTCTGGCAGCTGTTGCTGCTGACGGGCACCCTAGTGTC
GGGAATCGAGTCGCTTTGTGCCTTGCGCCACGTGGGGCCGCTTGCCCCTC
CCATGGTGACGGACGTGCACGCAGCTTGGCGAGGGCTGGGCGCTGCCTGT
CTGTGGGTGTATGCCTGTCGGTATATGCACCACTCTGACAGACTCTACGC
CATCGTCCTGGTCATCAACCACAGTGTCCCCCGCGTCGCCCGGATGCTCG
TCCAGGTCGTGCCGCTCTTTGTCGGCTACGCATGGTTTGGGGTCATGTTC
TTCGCCCCTTACTTGCCTCGCTTTGGCTCCTTCTCTCAAGCTTTCGCCAC
CCTTTTTTGTGTGTGGAACGGGGACGGCTTGATGGACGTGCAGGGGGAAC
TCGGCACCTGGTTTCCCGGTCTGGGTTTCGCCTACCTGTCGGTGTTTGTC
GGGGTTTTTTCCTACGTGGTATTGAACATCTTGTTGGTGGTGGTGCAGCA
GACTTTGGTGTATGTCCAAGTCCTAGGCCGGGGGAAGCGGCGGCTGCACC
GGTTGCTTCTACGACGGGAGGGGGGGAAGAAGCCCGGTGGGGAAGGGAGG
GAAGGAGGGGATGGGGACAGGGACGTGGTGGAGGAAGGAGCTTCCAACAA
AGGGAGACAAAGTGGTGGGAGGCACCAGGGACTGGACGAAGAGAAGGACT
TTTTGGCCCTGCTGGATTTGACGCACGGGCAGGATGCGACCAGGGCATTT
TTTGAGGGGGAAAGCGGAGGGAGGGGCGGGGGCGGAGAGAGGAGGGAGAA
CAAGGGGGAGCGAGGAACCATGTGGCCCGAGAAAGGGAGGGCAGACGGGT
GCAAAGGACTGCGGCAGCGGCGTGGAGGCCGAGGGGAAAGGGAAGGGGGA
AAGAGAACGCCGGCCGTGAACTGGGATCAACATGATGCCGGCAGTGGGGT
GTAAGGGGGGCTTGCAGAGAATATCCGCCCAGAGGAGAAAGCAAGCAGAT
CGAGGGACAAGATCATTTCATGCTGGGCGATGGTGCTGATTTGTGTGACA
TGGCTTACAAAGGGAAGTGTAGATATGTGCTGGATTGGACTGTAGGCGCA
TTTCGTTGCTTGAGGTAGGAGGGTAGAGGGTATGATGATGACCCCGCTGG
CATCGAAAGCTGTACAGATAGCTCGACCGAGACGACCTCTCTTCGGTCCG
AGAAAGCAATACACAAGGCTGGTAACGGCAATGTGTGCTGTGTCAGAACG
AGCCTCCAGTCTCCCGTCGACTTTTC
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protein sequence of rna2218

>rna2218-protein ID=rna2218-protein|Name=rna2218|organism=Nannochloropsis gaditana|type=polypeptide|length=172bp
LPPSLLLLIHRQPPFPAFLDTFVEAAIAQAGYFDQQHLANFWLGCANLNY
GPSKAYWAACREALEGDRVLSSLSLFETSTLLHALAVMDVEESRSLLAPL
VGRATEEMRRRREQERDRAKRREMDVETESALRQLHQTYLYLQVLRRERE
DGREGGGRAGGRVRERSRWWGR
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mRNA from alignment at CM002458.1:1190109..1190823-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2218 ID=rna2218|Name=rna2218|organism=Nannochloropsis gaditana|type=mRNA|length=715bp|location=Sequence derived from alignment at CM002458.1:1190109..1190823- (Nannochloropsis gaditana)
CTCCCTCCCTCCCTCCTTCTCCTTATCCACCGCCAACCCCCTTTCCCAGC
ATTTCTTGACACCTTCGTAGAGGCGGCGATCGCGCAAGCGGGATATTTCG
ATCAACAGCATCTGGCCAATTTCTGGCTGGGGTGTGCAAATTTGAATTAT
GGGCCGTCCAAGGCATACTGGGCGGCATGTCGAGAGGCCCTGGAGGGGGA
CCGGGTACTGTCCTCCCTATCCCTCTTTGAGACCAGCACGCTCTTGCACG
CGTTGGCGGTGATGGATGTGGAAGAAAGCCGTTCCCTCCTGGCTCCGCTT
GTGGGGCGGGCGACCGAGGAGATGCGGAGGCGGCGGGAGCAGGAGCGGGA
CCGAGCCAAAAGGCGGGAGATGGACGTGGAGACGGAAAGCGCCTTAAGGC
AACTGCACCAGACGTATCTGTATCTACAGGTTTTGAGACGGGAGCGAGAA
GATGGAAGGGAGGGCGGGGGGAGGGCAGGGGGGAGGGTGAGAGAGAGGAG
CCGGTGGTGGGGGAGGTGACGCCGGCAGCCTTGGGCGCGTTTGGTCGCTT
GATAAAAGAGGTGTGGGACGAAAGCTCGCATTTGCTCAGTTTCCGGATAC
GGACCTCGGAATTCCAACGAGACGTGCAGCACGTGGCAGAGAGCATGGGG
TTGTGTTGCCTCCCCGAGGCCCGCGACGGGCCTTTTACCCTCGACATGGT
CATCGTGCCCGTGTC
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Coding sequence (CDS) from alignment at CM002458.1:1190109..1190823-

>rna2218 ID=rna2218|Name=rna2218|organism=Nannochloropsis gaditana|type=CDS|length=519bp|location=Sequence derived from alignment at CM002458.1:1190109..1190823- (Nannochloropsis gaditana)
CTCCCTCCCTCCCTCCTTCTCCTTATCCACCGCCAACCCCCTTTCCCAGC
ATTTCTTGACACCTTCGTAGAGGCGGCGATCGCGCAAGCGGGATATTTCG
ATCAACAGCATCTGGCCAATTTCTGGCTGGGGTGTGCAAATTTGAATTAT
GGGCCGTCCAAGGCATACTGGGCGGCATGTCGAGAGGCCCTGGAGGGGGA
CCGGGTACTGTCCTCCCTATCCCTCTTTGAGACCAGCACGCTCTTGCACG
CGTTGGCGGTGATGGATGTGGAAGAAAGCCGTTCCCTCCTGGCTCCGCTT
GTGGGGCGGGCGACCGAGGAGATGCGGAGGCGGCGGGAGCAGGAGCGGGA
CCGAGCCAAAAGGCGGGAGATGGACGTGGAGACGGAAAGCGCCTTAAGGC
AACTGCACCAGACGTATCTGTATCTACAGGTTTTGAGACGGGAGCGAGAA
GATGGAAGGGAGGGCGGGGGGAGGGCAGGGGGGAGGGTGAGAGAGAGGAG
CCGGTGGTGGGGGAGGTGA
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Synonyms
Publications