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Properties
| Property Name | Value |
|---|
| Product | cryptochrome chloroplastic mitochondrial-like protein |
| Orig transcript id | gnl|cribi|Naga_100190g4.3118.mrna |
| Orig protein id | gnl|cribi|Naga_100190g4.3118 |
| Gene | CRY3 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:1181459..1183845 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2215 ID=rna2215|Name=rna2215|organism=Nannochloropsis gaditana|type=mRNA|length=3278bp
CACGGACGCCCCTTTTCAATGTATTAGCTCATGGCTGTGGTCAAGACGTG
TATTGAGTAATCTTACGTACCTTTTCTCACATTTTTTCCCGCTAAGCCAC
AAGCAGTGCTATTCTGAGTGTGGTCCGCTGGGACTGCCCCATTCCTTGAG
AAAACACGCACGTCCCTGGCTAGATGGCCTCTCTGAGGCTTGGAACCAAG
GCAGCGACAGGCGGAAGAAATGTCTCACTATCTTTGCGGAGGAACATGCT
GCCACTGTCCTCCTTGACAAGCTCTGCGACGGGACATGCTTACAAATGCT
GCAATATGCATGGCAGTAAGAGGCCTTACACTGCCCTTTTGTCTGGCTGC
CGTCGTTTCACGCCCGCTTCGCCCTCCCCGGCCTCTTCCGGCTCTGTGTC
TTCCACCTTCTCTACCATCTCTCCAAGCGCCCAGAGCGCCTCGTCGACAG
GAAACGCACCTCTTTGTCATCGGAATGACGTGATGGTCAAGGAGGGTGCT
AAATGCAAAGCTCCTAACCAAGTCCATAAGTCCTTGGATTACGACAACCT
TGCGAGCGAGGTCATGACAGCGGTCGTGAGGGAGGACATGGCATCAGCCA
TGACGAGCTTGGAGCGCATGAACCTCATCGGCCATCCAGGCAGCCCCTTG
AGCATCACTGGCAGCCTCGTGGGAGCGACGTGCCACGCCTTCCTCTCCCT
CTGTCAGCGCCGGCACAGGCAGACCAGTGGCGGCAAGGGACTGGGGGAGG
CCTTGCACATCCTCAGCCTCCAAAATCTGGCCGCGTCTTTCGACATGGCC
TGCACCCGCCTCCTTTTCTCCCTACTGCCCACCTCTCACCCCGCCCAGTG
GTCCACCACATTCAAGGCGCTGGACCTGGCCTTCGCGAACCTCCCGGCGG
TGGCCTACCCCTCCCAAAGCCTCAAACGTACGGCCCTCCGACAATTCGCC
GAGGCCGGGCGCCCGGAGGAAGTGCGCTGGTTGCTGACCCGCATGCAAGA
ACCTTTTCTGGCCCTCTCGTCGAAGACATCGAGAGCTGCCCGGTCCAGGC
AACGCGAAAAGAAACGGGGGATAGGGAAGGAAAGCCACCCGCCCTCTTTG
GGGGAAGTTGGCAAATTGCATTCGTCGGCCTGGCATTTATTCAAAGCCTA
TTTGTACGCATTTCGACCCACCGAGGCCTTGCACTTGCTCCGCACCGAGA
CCTCGCCGGGCATGCTGGACGTGGAAACCACAAATATGCTGTTGAAAGCC
CTGTCGCGCCATTATTTGGTGGAGGAATTGTTCGTCTTCTTCGCTTGGGC
GGAGAAGCACGCCATGGTCAGGTTGAACACGGAGAGCTACACACATGCGA
TCGCCTCGTTGGCCAGGACGTCCCGAGACCCTAAGGGATGCAAGGGGAAG
CCTCTGACCGTTTCCCTGGACGGGGAGACCGGCCCAGGCGCCGGGAGAGG
GGTCGCGGGTGGGACGGATTGCAGCAACCAAGACCAAGCCCTCTCCCTCC
TTGCACGGATGGAGTCGCAAGGCTTGACGCCGGATGTCCACACATTCGTG
GCCCTCATAGACGTGTTTGCTGAGGCGGGCGACCTCGAAGGGGGCCTGGA
GGTCTTCTTCGGGAAGATGGCGAAAGAACGGCGACTCCGCCCGGATGGGG
CCGTGTTTGGGAAGCTGATGAAGTTGTTGTCACGGAGGAAGGAATGGGAA
AAAGTGATCGCCTGTCACGAAGCGATGGAGGAATTGGGCCTCTCGGACAC
GAAGGAGGTCAGTACGGTCATGGTCATGTATGCCTGGGAGAAGATGGGAA
AATGGGGGGAAGTGAAGGACCTGCTGGGGCGCATCCATCAACGCGAAGGG
GGCGTGCGAACGTTGAAGACCTTTACGTACGCCATGCATGCCTTTGGGGT
GGCGGGCAAATATCAGCAGGCCTTGGCATGTGTGCGTGAGGTAGAACGAC
GCGAGGACCTTCATACAGGCATGAATGCTTACGGGCACATGATGCTGGTG
CACGTCTGTGCCCGTGGGCAGGACTGGGCAGGCGTCCAACGATGGTGGCA
GCGAATGCAAGTCAAGGGCTTGGAGGGGGAGGCGGACCAATACTTGTCCT
GCGCCGTGCTGAGTGCCTGCGCGGTTAAGGGGGCTTGGGACGACGGACTG
GCATTTGTGGACCGAGTGGGCGCCTGTGCCAGCTCCAGCCTGGCGGAGGA
GGCGATGGCACTCCTAGTGCTGCGGGCAGCAAAAGCAGGGCGGGGGCGGG
AGGTGGGAGAAGGGGTCCGGAAGAGGCTGCTTGACCACGGCCTTCCCATT
GGGCCCTTTCTGACTGAGGTCTTGGCGGTGGTCTCGGGGGAGGAAGGGGG
GCATGCGCAGGAATGGGAAGGGGTTGTACGGAGATGGTATGAGAGGATGG
AGGGACAGAGGGAGAGGGAGATGGCAGGGCCTGACGTGGCAATAGAGGTT
CTCGGGGACCTTGCCGGCGTGAGGACCCCCTGGCCAGTGTCGTGGTATCT
GGTAGGAGACATGGCGGCACAGGGGCTTCTGAAGGAGAGGGAGGCAGCGA
GGGCAGTGGAGGCGTTGAAGGAAAAAGAGGCGTTTGCACTCTTCGTTTCC
GACTCTTCGACCGCAGCAGTGAGGGATGGGGGAGGGGAGGGAGGGAAAGA
GGGCCAGGAAAGCATGGGCGCTGAGAAGGACGGGCTCGAGAGGAAGGAAA
GGTGGGAAAACGGCGTCGAAGACGTGGGAGGGGAGGTGTTGGCAGCGAAA
GAGAGGCACGAGGGGTCACGGGTCATGGAAACCACTGAACGGAGCAGGGC
GGTCAAGAGGCGGCACAGGGAGAGACGAATACCTGCTTACCTCGACCTGC
CCTACTCAGAGCCGCAGCACGCATACAGGGAACGGGCATGGGCCTCGGCT
GCGCCGTCTGGGGTGACGCAATCCTCGCCTACGTTTCCAGAGACTTGGCG
GTAAGGGAAAAGTGGATGGCACGGAGGTGACGGGGCAAGGATGGACGGAT
ATGCATCGCTCGAGAGAGGGTCATGCGACTCGGGGCACTGCGTGGCAGGA
GGTCGGCCTGCATTTTTGGTGGGGGAGGGGACGGTGGCTAGTGGTTGGAG
TCGCGCCAGAGAAGGAAAGTGGTAGACGGGACGACAGGGGGTGTACAGTC
AGGAAAGAAATTAGTCGCCGTGTAGATCAGGTGCATGGGCGCCATTATAA
AGTGAGCGATAGGGAAGGCATGAATGGGGGGGCGTGCCGGATGAGGCACG
GGTGGGGGACATCAAAACCAAATGTGCG back to topprotein sequence of rna2215 >rna2215-protein ID=rna2215-protein|Name=rna2215|organism=Nannochloropsis gaditana|type=polypeptide|length=628bp
MFPLLPRSAALTTLVCHILVRARAGFPHSSASTVTAFVRPFLTPILATSG
TGQHWLHRAVPRAAVASTVTMTNGEGTSSDTSVKKCGLVWYKCTDLRTLD
HEPLSLAHAENSHVAHLFCFDPRWFGDAGGPSAPGTLKTGPLRARFLLEA
VEDLKTRLGGNMIVKLGKPETEVPRLAKALKVDFVYAHREVTSEEVAVVK
GVKEGLSKATEGKSQFRELWGNYLYHIDDVPFQNLKQDMPSIFTQFRKAV
ESKARVRKYLPKPPSLKPAPPRSTVEENTNALLSPLTLEALGFTREEDLG
PVLSYASDTRVDPSSVLMFKGGETAGLARLQEYFWDKDLLQKYKETRNGM
LGPDYSSKFSPWLATGSISPRVIFAEIRKYERERVENDSTYWLFFELIWR
DFFRFSAISFGNAFFKLGGPQGNPRKYPWKRDGALYHAWKEGLTGYPLVD
ANMRELKTTGFMSNRGRQLVASFLTRDMGLEWRLGAYWFEEVLLDYDPCS
NYGNWCYAAGVGSDPREDRYFSLPKQGATYDPEARYIKHWCPELRHIPAD
ILLNPARFDGPVRAKFAVGEEVYPRQIVPLKFGGGGGGGIKGSGGKSGSK
RGGGGGGKGRAPFKGPRRPTNRLQSDYL back to topmRNA from alignment at CM002458.1:1181459..1183845+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2215 ID=rna2215|Name=rna2215|organism=Nannochloropsis gaditana|type=mRNA|length=2387bp|location=Sequence derived from alignment at CM002458.1:1181459..1183845+ (Nannochloropsis gaditana)
GTCTTGACATCGCTGGCATACAACAAGCCTTTTTCAATGCTGCCAGGTAC
AGATTGGCTTTGCATAATACATCCGTTAATGTAGCCTCTCTTATCAACAT
TTACAACCTTGGTCTTTCGTACACACAGGCTTTGGTCGCTGCATGTTTCC
GTTGCTGCCTCGATCTGCAGCACTCACAACCCTGGTCTGTCATATTTTGG
TCCGCGCCCGTGCTGGATTCCCCCACAGCAGCGCGTCGACTGTTACAGCC
TTCGTACGTCCTTTTCTCACGCCAATTCTAGCCACGTCAGGTACTGGACA
GCATTGGCTGCATCGTGCCGTGCCACGCGCTGCAGTCGCCTCCACCGTCA
CTATGACCAACGGAGAGGGAACGTCCTCGGACACCTCAGTGAAAAAGTGC
GGTCTGGTCTGGTACAAATGCACGGATTTGCGCACCCTCGACCATGAACC
ACTGTCTTTGGCGCACGCCGAAAATTCCCACGTCGCCCATCTCTTCTGTT
TTGACCCTCGATGGTTTGGAGATGCAGGGGGGCCGTCGGCGCCCGGGACC
CTCAAGACGGGGCCGCTCCGCGCACGTTTTCTGCTCGAAGCCGTGGAGGA
TTTGAAGACACGGTTGGGGGGAAATATGATCGTGAAGCTGGGCAAACCCG
AAACGGAAGTGCCGCGCTTGGCCAAGGCGTTGAAAGTGGATTTTGTATAC
GCCCACCGAGAGGTCACGTCCGAGGAAGTGGCAGTGGTcaagggcgtgaa
ggagggcctGTCCAAGGCGACTGAGGGGAAAAGCCAGTTTCGAGAATTGT
GGGGCAATTATCTTTACCATATCGACGACGTACCTTTCCAGAACCTCAAG
CAAGACATGCCCTCGATCTTTACCCAATTTCGCAAGGCAGTGGAATCCAA
AGCGCGGGTTCGAAAATACCTGCCCAAGCCCCCTTCTCTGAAGCCCGCCC
CCCCACGCAGCACGGTTGAGGAGAATACTAACGCCTTGTTGTCTCCCCTC
ACCCTGGAAGCTCTGGGTTTcacccgggaggaggacctgggcCCTGTCCT
AAGTTACGCCAGCGACACTCGCGTGGACCCGTCTTCGGTCCTCATGTtta
aggggggggagacagcAGGCCTGGCGCGTCTGCAGGAGTATTTTTGGGAC
AAGGACCTGGTAAGTTGGCAGGAGAATGGGGGAGGTCACCTAGCGcgcgt
cctctttcttcggcGTCCCGGCCCCttatccctctttccttttgacctct
ctttcctccgccgctggGGGGAGACAGTAAAGTCACATCGACCTGCCATC
ACGGTCCTAGATGGGTCGCTTTGGGCATGGACAATTTATCTTTGTATGAC
AGTTTCATGCCTAGATTTCAGAGTATTCTTACAAgtcttcttttctttgg
cCCTACTCTTTTCCTGACAGCTCCAAAAATACAAGGAGACGCGCAATGGT
ATGTTGGGGCCGGATTACAGCAGCAAATTCAGCCCCTGGCTAGCCACTGG
GAGCATATCTCCCCGGGTTATCTTCGCAGAAATTCGGAAATACGAGCGGG
AGCGCGTGGAGAACGACAGCACGTATTGGCTGTTTTTCGAACTGATATGG
CGCGATTTTTTCCGcttctccgccatctccttcggCAACGCTTTTTTCAA
ACTGGGTGGTCCGCAAGGAAACCCTCGCAAATACCCATGGAAGCGGGACG
GGGCTTTGTACCATGCGTGGAAAGAGGGCCTCACGGGGTATCCGTTGGTG
GACGCGAACATGCGTGAGTTGAAAACCACGGGGTTCATGTCCAACCGGGG
GCGGCAACTTGTCGCCTCTTTTTTGACCCGGGATATGGGCTTGGAATGGC
GCCTGGGTGCGTATTGGTTCGAAGAGGTGCTTTTGGACTACGATCCGTGC
AGCAATTACGGGAATTGGTGTTAtgcggcgggcgtggggagTGATCCGCG
GGAAGATCGATATTTCTCGCTGCCCAAGCAGGGGGCTACGTACGACCCTG
AGGCAAGGTACATCAAACATTGGTGTCCAGAGCTGCGTCATATCCCTGCC
GATATTCTGCTCAATCCTGCCCGCTTTGATGGGCCGGTACGGGCAAAATT
TGCTGTAGGTGAGGAGGTATACCCGCGGCAGATTGTCCCGTTGAAAtttg
gagggggcgggggaggggggattaAAGGGTCGGGAGGCAAAAGCGGCAGT
aaacgaggaggtggtggaggtggaaagggacGCGCACCGTTCAAGGGCCC
ACGACGACCGACCAATCGGCTGCAAAGTGATTACTTATGAAGGGCATTTA
TGTGCTTTGTCGACAGGCGCCGGCGGGTAGGAAAGAAGGATATGGATTAA
GCAAACGCAATGAAAGCAGAAACAacacccctttctt back to topCoding sequence (CDS) from alignment at CM002458.1:1181459..1183845+ >rna2215 ID=rna2215|Name=rna2215|organism=Nannochloropsis gaditana|type=CDS|length=3774bp|location=Sequence derived from alignment at CM002458.1:1181459..1183845+ (Nannochloropsis gaditana)
ATGTTTCCGTTGCTGCCTCGATCTGCAGCACTCACAACCCTGGTCTGTCA
TATTTTGGTCCGCGCCCGTGCTGGATTCCCCCACAGCAGCGCGTCGACTG
TTACAGCCTTCGTACGTCCTTTTCTCACGCCAATTCTAGCCACGTCAGGT
ACTGGACAGCATTGGCTGCATCGTGCCGTGCCACGCGCTGCAGTCGCCTC
CACCGTCACTATGACCAACGGAGAGGGAACGTCCTCGGACACCTCAGTGA
AAAAGTGCGGTCTGGTCTGGTACAAATGCACGGATTTGCGCACCCTCGAC
CATGAACCACTGTCTTTGGCGCACGCCGAAAATTCCCACGTCGCCCATCT
CTTCTGTTTTGACCCTCGATGGTTTGGAGATGCAGGGGGGCCGTCGGCGC
CCGGGACCCTCAAGACGGGGCCGCTCCGCGCACGTTTTCTGCTCGAAGCC
GTGGAGGATTTGAAGACACGGTTGGGGGGAAATATGATCGTGAAGCTGGG
CAAACCCGAAACGGAAGTGCCGCGCTTGGCCAAGGCGTTGAAAGTGGATT
TTGTATACGCCCACCGAGAGGTCACGTCCGAGGAAGTGGCAGTGGTcaag
ggcgtgaaggagggcctGTCCAAGGCGACTGAGGGGAAAAGCCAGTTTCG
AGAATTGTGGGGCAATTATCTTTACCATATCGACGACGTACCTTTCCAGA
ACCTCAAGCAAGACATGCCCTCGATCTTTACCCAATTTCGCAAGGCAGTG
GAATCCAAAGCGCGGGTTCGAAAATACCTGCCCAAGCCCCCTTCTCTGAA
GCCCGCCCCCCCACGCAGCACGGTTGAGGAGAATACTAACGCCTTGTTGT
CTCCCCTCACCCTGGAAGCTCTGGGTTTcacccgggaggaggacctgggc
CCTGTCCTAAGTTACGCCAGCGACACTCGCGTGGACCCGTCTTCGGTCCT
CATGTttaaggggggggagacagcAGGCCTGGCGCGTCTGCAGGAGTATT
TTTGGGACAAGGACCTGCTCCAAAAATACAAGGAGACGCGCAATGGTATG
TTGGGGCCGGATTACAGCAGCAAATTCAGCCCCTGGCTAGCCACTGGGAG
CATATCTCCCCGGGTTATCTTCGCAGAAATTCGGAAATACGAGCGGGAGC
GCGTGGAGAACGACAGCACGTATTGGCTGTTTTTCGAACTGATATGGCGC
GATTTTTTCCGcttctccgccatctccttcggCAACGCTTTTTTCAAACT
GGGTGGTCCGCAAGGAAACCCTCGCAAATACCCATGGAAGCGGGACGGGG
CTTTGTACCATGCGTGGAAAGAGGGCCTCACGGGGTATCCGTTGGTGGAC
GCGAACATGCGTGAGTTGAAAACCACGGGGTTCATGTCCAACCGGGGGCG
GCAACTTGTCGCCTCTTTTTTGACCCGGGATATGGGCTTGGAATGGCGCC
TGGGTGCGTATTGGTTCGAAGAGGTGCTTTTGGACTACGATCCGTGCAGC
AATTACGGGAATTGGTGTTAtgcggcgggcgtggggagTGATCCGCGGGA
AGATCGATATTTCTCGCTGCCCAAGCAGGGGGCTACGTACGACCCTGAGG
CAAGGTACATCAAACATTGGTGTCCAGAGCTGCGTCATATCCCTGCCGAT
ATTCTGCTCAATCCTGCCCGCTTTGATGGGCCGGTACGGGCAAAATTTGC
TGTAGGTGAGGAGGTATACCCGCGGCAGATTGTCCCGTTGAAAtttggag
ggggcgggggaggggggattaAAGGGTCGGGAGGCAAAAGCGGCAGTaaa
cgaggaggtggtggaggtggaaagggacGCGCACCGTTCAAGGGCCCACG
ACGACCGACCAATCGGCTGCAAAGTGATTACTTATGAATGTTTCCGTTGC
TGCCTCGATCTGCAGCACTCACAACCCTGGTCTGTCATATTTTGGTCCGC
GCCCGTGCTGGATTCCCCCACAGCAGCGCGTCGACTGTTACAGCCTTCGT
ACGTCCTTTTCTCACGCCAATTCTAGCCACGTCAGGTACTGGACAGCATT
GGCTGCATCGTGCCGTGCCACGCGCTGCAGTCGCCTCCACCGTCACTATG
ACCAACGGAGAGGGAACGTCCTCGGACACCTCAGTGAAAAAGTGCGGTCT
GGTCTGGTACAAATGCACGGATTTGCGCACCCTCGACCATGAACCACTGT
CTTTGGCGCACGCCGAAAATTCCCACGTCGCCCATCTCTTCTGTTTTGAC
CCTCGATGGTTTGGAGATGCAGGGGGGCCGTCGGCGCCCGGGACCCTCAA
GACGGGGCCGCTCCGCGCACGTTTTCTGCTCGAAGCCGTGGAGGATTTGA
AGACACGGTTGGGGGGAAATATGATCGTGAAGCTGGGCAAACCCGAAACG
GAAGTGCCGCGCTTGGCCAAGGCGTTGAAAGTGGATTTTGTATACGCCCA
CCGAGAGGTCACGTCCGAGGAAGTGGCAGTGGTcaagggcgtgaaggagg
gcctGTCCAAGGCGACTGAGGGGAAAAGCCAGTTTCGAGAATTGTGGGGC
AATTATCTTTACCATATCGACGACGTACCTTTCCAGAACCTCAAGCAAGA
CATGCCCTCGATCTTTACCCAATTTCGCAAGGCAGTGGAATCCAAAGCGC
GGGTTCGAAAATACCTGCCCAAGCCCCCTTCTCTGAAGCCCGCCCCCCCA
CGCAGCACGGTTGAGGAGAATACTAACGCCTTGTTGTCTCCCCTCACCCT
GGAAGCTCTGGGTTTcacccgggaggaggacctgggcCCTGTCCTAAGTT
ACGCCAGCGACACTCGCGTGGACCCGTCTTCGGTCCTCATGTttaagggg
ggggagacagcAGGCCTGGCGCGTCTGCAGGAGTATTTTTGGGACAAGGA
CCTGCTCCAAAAATACAAGGAGACGCGCAATGGTATGTTGGGGCCGGATT
ACAGCAGCAAATTCAGCCCCTGGCTAGCCACTGGGAGCATATCTCCCCGG
GTTATCTTCGCAGAAATTCGGAAATACGAGCGGGAGCGCGTGGAGAACGA
CAGCACGTATTGGCTGTTTTTCGAACTGATATGGCGCGATTTTTTCCGct
tctccgccatctccttcggCAACGCTTTTTTCAAACTGGGTGGTCCGCAA
GGAAACCCTCGCAAATACCCATGGAAGCGGGACGGGGCTTTGTACCATGC
GTGGAAAGAGGGCCTCACGGGGTATCCGTTGGTGGACGCGAACATGCGTG
AGTTGAAAACCACGGGGTTCATGTCCAACCGGGGGCGGCAACTTGTCGCC
TCTTTTTTGACCCGGGATATGGGCTTGGAATGGCGCCTGGGTGCGTATTG
GTTCGAAGAGGTGCTTTTGGACTACGATCCGTGCAGCAATTACGGGAATT
GGTGTTAtgcggcgggcgtggggagTGATCCGCGGGAAGATCGATATTTC
TCGCTGCCCAAGCAGGGGGCTACGTACGACCCTGAGGCAAGGTACATCAA
ACATTGGTGTCCAGAGCTGCGTCATATCCCTGCCGATATTCTGCTCAATC
CTGCCCGCTTTGATGGGCCGGTACGGGCAAAATTTGCTGTAGGTGAGGAG
GTATACCCGCGGCAGATTGTCCCGTTGAAAtttggagggggcgggggagg
ggggattaAAGGGTCGGGAGGCAAAAGCGGCAGTaaacgaggaggtggtg
gaggtggaaagggacGCGCACCGTTCAAGGGCCCACGACGACCGACCAAT
CGGCTGCAAAGTGATTACTTATGA back to top
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