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Properties
Property Name | Value |
Product | pleckstriny domain-containing |
Orig transcript id | gnl|cribi|Naga_100190g8.3126.mrna |
Orig protein id | gnl|cribi|Naga_100190g8.3126 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002458.1 | supercontig | CM002458.1:1171289..1174454 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2211 ID=rna2211|Name=rna2211|organism=Nannochloropsis gaditana|type=mRNA|length=1437bp GTGAGGCGATAGATGCAAACGACGGGGCAGAGTCCTCCATGGCTTCACGA GGCCGAGCGCCGGCGTTTCCGATACCGGTGGGAGGGCGCACCTTCCCTCC TTCCCGCCCTCTCTCCGTGTACACGGACATGCCCGTCCTCGTACACAGCT TGGACTTGCCTGCCCGCTTCTATCTCACCGACCATGCTCAGGACGCTGAC ATCTTGTGGGCGACGCCGGCCTTTTTCGCTTCCCACGTCCCGCAGTCGGC CCGGGGCCGGAGGCAGTGGAAAGCAACCCTGCCCTTCCTGGGGGAGGTGG ACGATAAATGCCAGCTGGTGCACCTGCTGACTCGGCTCTCCCACACACGG TCCCAGCTCTCTATACCCTGGCTGCCTCGCTCCTACTGCCTTCCCGAGGA CCTTCCGCGGCTTCTCGATGACTGGGAGACCCCTTCCTCCCGCCCGCCCT CCGCCCCGCCCTCGACCTGGATCCTCAAACCCCCCCATCTGGCTCGAGGA TGGGATATTGCTCTCACTCGCTCCCTACCCTGTATCCTTCGGCATTTGCA AGCGTCGGGGAGGCTACTTGTCTCAGACTACCTGACTTCTCCAGACCTGT GGCTCGACGGACACAAGTACGACCTGCGCATGTACGTCTTGCTCCTCAGC CCCTCCCTCGTCTTGATCCACAGACAATTCCGAGTTCGGAGGGCTAGCCA GCCATATTCAATGGCGTTGGAACATTTGGAGGATTTGAGAATACACCTGA CCAATACTACTTTGGGCCTCAGCGGGCTGGGACAAGCGGACGCGGGAGGC GAGGAAGGGCATGGATGCCCGACGGAGACCGTCTCCTGCCTCGACTTTGT GGAGAAGTGGGAAAGCCTGCACCCTGGACGTGAAGGCTGGGAGGGTGTGC GTCGACGCATCGACAGCATGTTGAGGGAGTGCTTTAGCCTAATAGGAAGG GCAGGTGGGCGGGAGGGAGGGAGGGAGGCATTGCACGTTCATGATCCCTA CGGACGGGCCTTGGTAGGTGTGGATGTATTGCTGGACCGTGCGACGCTAT CACCGCATTTGATCGAGATAAATGCTTCACCGAATATCTCGGGCATGCTA TCCGAACGTCCCGGGTTCTCCAATGAAGTCTTCTCAGCGGCCTTCATCGA GGGAGGGTGGCGGGAAGATGGAAACGGCTTTTATCCTTTGATTGATCAGC AGAATCCCAATGAAGGCTGCTCATGACATCGAGACCATACCGGGGCTTAG TTACATGAAGGTGTCATGGGAGGCTTGTTGCTTTCACTTGTTGCCCTTTT TCTCCGAAACGTATAAATTAATAATGTTTGGCTGCAGCGTTGTGTCCTCA CCCGTTGTTTTTTTGGGATGGAAAACCAAAATTGTATTCTCCAAGATAAC ATGTATCGATGTCCGGCAAAGCGAAGTAAAAAAGACC back to topprotein sequence of rna2211 >rna2211-protein ID=rna2211-protein|Name=rna2211|organism=Nannochloropsis gaditana|type=polypeptide|length=824bp MAYVKRLWKRGVRRQSSFETKPRSDSQTQIDLLLEPSCALANDVDGRPRL VPGSEASSSRHQQDDRMQQEALVGALQTTVLEQSRKLKDLSRSIDRLHAE NRRAGHHIEALRSLLGHVTGCDLGGSGPDFQMEEVRETEEKEGRMLALED ETAPVSDDQASGVTNIASRGIAPGAFSTTQAAISEEGPGTSHDIQGVYAY LSSLVASATSTLFPSVEPLGGSLASAASSSSTSYADLPSLAFPASTGAGP RKGVPTSVEDTQALLMGQILEKLHLAEDRYAFQAEEIHACHKRLEGLEEE AAALRAEKQRYERLLLGLKRELTAYKNKLQARDYKEATMEVEIDRYRHEK QRMTRMLSEVVDSAAASSAPASATNTPGSQELGEFFPLPGASPLGTGRMR ARVEMAALQAELDAARAVSEVEVRKRVAAEHELSVWRKALAESGPRLSSV QGSAARPGGGESVSGEGKGPGIGGVGGGGRRVEDRWSGEEDVEDREVTTL VIKEQLSSLRELNPAFHASWGDATTEWKVRGRTYMADGVKVGGRAAEPLC ELVHMELFEVESAGLVPRADHVTALFQRKDGVYSRCQLLASQPPPFLIIL NFQVPGNPPCSMMCYFALCGARRQGLEKARERVRRRKAREGAVAAAEIIG EEQEEEEEEEEAEEEGMEDLGDGECVQEKREEKKFLRLLAEFLEGDDEEK NRRFKLIPSIIEGPALVRLMVGNKPVLLGNKLTQRYWTGPGYLEIGIDIG SSAMASRTLGFVRDGSKNVVVELAVLVQGEDEKELPEKVLGSLRSSRLDW GLAEGLKGRLEAAVIARTPSGETS back to topmRNA from alignment at CM002458.1:1171289..1174454+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2211 ID=rna2211|Name=rna2211|organism=Nannochloropsis gaditana|type=mRNA|length=3166bp|location=Sequence derived from alignment at CM002458.1:1171289..1174454+ (Nannochloropsis gaditana) TATGTGCCGCTGGAAATCAAGAGGGCACCAGTGTTTCGCGCGGATTATTG
GATCTAGTCCCGCGAATCTCTAACAGGACCCTCGCAGATAAGCCATCAAA
ATGGCCTACGTGAAGCGCCTGTGGAAACGGGGCGTGCGTCGACAATCCTC
CTTCGAGACCAAGCCAAGGTCCGATTCTCAGACGCAGATCGATTTGCTCT
TGGAGCCGTCTTGTGCTCTGGCCAATGACGTCGACGGGCGCCCCCGTCTT
GTTCCTGGGAGCGAggcgagcagcagcaggcatCAGCAGGACGACAGAAT
GCAGCAAGAAGCCCTGGTCGGGGCCTTGCAGACCACCGTGCTGGAACAAA
GTCGCAAGCTGAAAGACTTGAGCAGAAGCATCGACAGGTTGCACGCGGAG
AACCGGCGTGCTGGTCACCACATCGAAGCCTTGCggagcctccttggcca
cgtgACAGGATgcgacctgggagggagcgggccgGATTTccagatggagg
aagtgcgcGAAaccgaggaaaaggaagggcgaaTGCTCGcgttggaggac
gagactgCCCCTGTCTCCGATGATCAAGCCAGCGGCGTAACCAATATCGC
CAGCAGGGGCATCGCTCCGGGTGCGTTTTCCACGACCCAGGCCGCCATCA
GCGAAGAGGGCCCCGGCACTTCCCACGATATACAAGGTGTATACGCCTAT
TTGAGCAGCCTTGTGGCTTCCGCCACCTCGacgcttttcccctctgTGGA
ACCGCTCGGTGGAAGCCTTGCCTCGgccgcctcatcctcttccacctcct
acGCCGACCTGCCCTCTCTGGCGTTTCCTGCCAGCACGGGGGCGGGccca
aggaagggggtaCCTACCAGTGTGGAAGACACGCAAGCCTTGTTGATGGG
GCAGATATTGGAGAAGTTGCATTTGGCTGAGGACCGCTATGCTTTCCAGG
CCGAAGAAATCCATGCGTGCCACAAACGGCTGGAGGgtttggaggaagaa
gcggcggcTTTGCGGGCGGAAAAGCAACGGTACGAGCGCCTGCTTCTTGG
CTTGAAGAGGGAATTGACGGCCTACAAGAACAAGCTCCAGGCCCGTGACT
ACAAGGAAGCGACAATGGAGGTGGAAATCGACCGCTACCGGCACGAGAAA
CAGCGCATGACGCGCATGTTGAGCGAAGTGGTGGACAGCGCGGCGGCTTC
ttcggcccctgcctccgccaccaACACCCCGGGGTCTCAGGAGCTGGGGG
AGTTCTTCCCGCTGCCAGGGGCATCCCCCCTGGGGACGGGGCGGATGCGG
GTGGGAagtttggaaggggagggcctgccgccgccgcgccctctcccacc
cccgcaCCCCACAACTTCGTCTGTACAGACCCTGGCCCTGGGGCTCGATa
ccgggaggggagggagggggggagggacaggtgGTGCCCCCgctgcgccc
tccccttccaatgcgtcgggaagggggggcacgggccCGGGACATCCAAG
CGGCCATCCCCGGATGCACCCGTCGTCCCCCTTGAAATGCGCCCATGCCG
CCCATGCCTTTTCGCCCCAGcggactcccccccccgggaggCGCCActgg
cctcccccctcggacCTCGTCGCGAggtcccctcccaccgctgcctcccc
cctgccttcttcctccgccgccaccacgcAAGCCCTCACCCAGGCGCGTG
TGGAAATGGCGGCTCTCCAGGCCGAGTTGGATGCGGCAAGGGCGGTGTCG
GAGGTagaggtgaggaagagggtggcagCAGAGCACGAACTGAGCGTCTG
GCGCAAGGCATTGGCGGAGTCAGGGCCCAGACTGTCGTCCGTGCAGGGGA
GCGCGGcaaggcccggggggggagagagcgtgtcgggggaggggaaggga
ccGGGAATAGGCggggtgggcggagggggccgaagggtggaggacaggtg
gagcggggaggaagacgtggaggacagggaagtGACGACCTTGGTCATCA
AAGAGCAGCTTTCCAGCCTGCGGGAACTGAACCCGGCTTTCCACGCGAGC
TGGGGGGATGCCACGACCGAATGGAAGGTGCGAGGAAGGACCTACATGGC
GGACGGGGTCAAGgtaggggggcgggcggccgAGCCACTCTGCGAACTGG
TGCACATGGAGCTTTTCGAGGTGGAGAGTGCCGGCCTTGTGCCCCGGGCG
GACCACGTCACGGCCCTCTTTCAGAGGAAAGACGGGGTCTACTCGCGGTG
TCAGCTTTTGGCCTCACAGCCCCCCCCGTTCTTGATCATTTTGAACTTTC
AAGTACCGGGAAATCCTCCGTGCAGCATGATGTGCTATTTTGCTTTGTgt
ggagcgaggaggcaaggTTTAGAGAAAGCGCGCGAAAGAGTGAGAAGacg
gaaagcgagggagggggcggtggcggcagcAGAGATTATtggcgaggagc
aggaggaggaagaggaggaggaggaagcagaggaggaagggatggaggac
ctgggggacggggagtgtgtgcaggaaaagagggaagaaaagaaatttCT
GCGGCTGCTTGCGGAATTTTTGGAAGGGGACGATGAGGAGAAGAACCGGC
GTTTCAAATTGATTCCGTCCATCATCGAAGGGCCCGCCTTGGTGCGACTG
ATGGTTGGGAATAAGCCCGTTTTGCTCGGGAATAAGCTGACCCAACGGTA
TTGGACAGGCCCCGGGTACTTGGAGATAGGGATCGATATAGGAAGCTCCG
CCATGGCCTCGCGGACGCTGGGTTTTGTGCGGGACGGGAGCAAGAATGTG
GTGGTGGAGTTGGCGGTCTTGGtccagggggaggacgagaaggagttgCC
GGAGAAAGTGTTGGGCTCCCTGAGGAGTTCGCGACTGGACTGGGGCCTGG
CGGAAGGATTGAAAGGCCGATTGGAAGCGGCTGTCATCGCTCGGACGCCC
TCCGGCGAGACCTCctaaagaaaggaaaggaccgAGGGGCGAAAAGGTGC
GCGCGGAGAATGTATAGTGAGGCTTTCATTATGGGTATTTGTATGTCTTT
GCCTATCAGATAGAATTACGTTGAGAGTGAAATACTTCTCACTCACTGAC
TAGGGGGCAAGACTTAAATGGATAGGATGACCAGGAAGATACAAAAGAAT
TACATATTTTAAGAAG back to topCoding sequence (CDS) from alignment at CM002458.1:1171289..1174454+ >rna2211 ID=rna2211|Name=rna2211|organism=Nannochloropsis gaditana|type=CDS|length=4950bp|location=Sequence derived from alignment at CM002458.1:1171289..1174454+ (Nannochloropsis gaditana) ATGGCCTACGTGAAGCGCCTGTGGAAACGGGGCGTGCGTCGACAATCCTC CTTCGAGACCAAGCCAAGGTCCGATTCTCAGACGCAGATCGATTTGCTCT TGGAGCCGTCTTGTGCTCTGGCCAATGACGTCGACGGGCGCCCCCGTCTT GTTCCTGGGAGCGAggcgagcagcagcaggcatCAGCAGGACGACAGAAT GCAGCAAGAAGCCCTGGTCGGGGCCTTGCAGACCACCGTGCTGGAACAAA GTCGCAAGCTGAAAGACTTGAGCAGAAGCATCGACAGGTTGCACGCGGAG AACCGGCGTGCTGGTCACCACATCGAAGCCTTGCggagcctccttggcca cgtgACAGGATgcgacctgggagggagcgggccgGATTTccagatggagg aagtgcgcGAAaccgaggaaaaggaagggcgaaTGCTCGcgttggaggac gagactgCCCCTGTCTCCGATGATCAAGCCAGCGGCGTAACCAATATCGC CAGCAGGGGCATCGCTCCGGGTGCGTTTTCCACGACCCAGGCCGCCATCA GCGAAGAGGGCCCCGGCACTTCCCACGATATACAAGGTGTATACGCCTAT TTGAGCAGCCTTGTGGCTTCCGCCACCTCGacgcttttcccctctgTGGA ACCGCTCGGTGGAAGCCTTGCCTCGgccgcctcatcctcttccacctcct acGCCGACCTGCCCTCTCTGGCGTTTCCTGCCAGCACGGGGGCGGGccca aggaagggggtaCCTACCAGTGTGGAAGACACGCAAGCCTTGTTGATGGG GCAGATATTGGAGAAGTTGCATTTGGCTGAGGACCGCTATGCTTTCCAGG CCGAAGAAATCCATGCGTGCCACAAACGGCTGGAGGgtttggaggaagaa gcggcggcTTTGCGGGCGGAAAAGCAACGGTACGAGCGCCTGCTTCTTGG CTTGAAGAGGGAATTGACGGCCTACAAGAACAAGCTCCAGGCCCGTGACT ACAAGGAAGCGACAATGGAGGTGGAAATCGACCGCTACCGGCACGAGAAA CAGCGCATGACGCGCATGTTGAGCGAAGTGGTGGACAGCGCGGCGGCTTC ttcggcccctgcctccgccaccaACACCCCGGGGTCTCAGGAGCTGGGGG AGTTCTTCCCGCTGCCAGGGGCATCCCCCCTGGGGACGGGGCGGATGCGG GCGCGTGTGGAAATGGCGGCTCTCCAGGCCGAGTTGGATGCGGCAAGGGC GGTGTCGGAGGTagaggtgaggaagagggtggcagCAGAGCACGAACTGA GCGTCTGGCGCAAGGCATTGGCGGAGTCAGGGCCCAGACTGTCGTCCGTG CAGGGGAGCGCGGcaaggcccggggggggagagagcgtgtcgggggaggg gaagggaccGGGAATAGGCggggtgggcggagggggccgaagggtggagg acaggtggagcggggaggaagacgtggaggacagggaagtGACGACCTTG GTCATCAAAGAGCAGCTTTCCAGCCTGCGGGAACTGAACCCGGCTTTCCA CGCGAGCTGGGGGGATGCCACGACCGAATGGAAGGTGCGAGGAAGGACCT ACATGGCGGACGGGGTCAAGgtaggggggcgggcggccgAGCCACTCTGC GAACTGGTGCACATGGAGCTTTTCGAGGTGGAGAGTGCCGGCCTTGTGCC CCGGGCGGACCACGTCACGGCCCTCTTTCAGAGGAAAGACGGGGTCTACT CGCGGTGTCAGCTTTTGGCCTCACAGCCCCCCCCGTTCTTGATCATTTTG AACTTTCAAGTACCGGGAAATCCTCCGTGCAGCATGATGTGCTATTTTGC TTTGTgtggagcgaggaggcaaggTTTAGAGAAAGCGCGCGAAAGAGTGA GAAGacggaaagcgagggagggggcggtggcggcagcAGAGATTATtggc gaggagcaggaggaggaagaggaggaggaggaagcagaggaggaagggat ggaggacctgggggacggggagtgtgtgcaggaaaagagggaagaaaaga aatttCTGCGGCTGCTTGCGGAATTTTTGGAAGGGGACGATGAGGAGAAG AACCGGCGTTTCAAATTGATTCCGTCCATCATCGAAGGGCCCGCCTTGGT GCGACTGATGGTTGGGAATAAGCCCGTTTTGCTCGGGAATAAGCTGACCC AACGGTATTGGACAGGCCCCGGGTACTTGGAGATAGGGATCGATATAGGA AGCTCCGCCATGGCCTCGCGGACGCTGGGTTTTGTGCGGGACGGGAGCAA GAATGTGGTGGTGGAGTTGGCGGTCTTGGtccagggggaggacgagaagg agttgCCGGAGAAAGTGTTGGGCTCCCTGAGGAGTTCGCGACTGGACTGG GGCCTGGCGGAAGGATTGAAAGGCCGATTGGAAGCGGCTGTCATCGCTCG GACGCCCTCCGGCGAGACCTCctaaATGGCCTACGTGAAGCGCCTGTGGA AACGGGGCGTGCGTCGACAATCCTCCTTCGAGACCAAGCCAAGGTCCGAT TCTCAGACGCAGATCGATTTGCTCTTGGAGCCGTCTTGTGCTCTGGCCAA TGACGTCGACGGGCGCCCCCGTCTTGTTCCTGGGAGCGAggcgagcagca gcaggcatCAGCAGGACGACAGAATGCAGCAAGAAGCCCTGGTCGGGGCC TTGCAGACCACCGTGCTGGAACAAAGTCGCAAGCTGAAAGACTTGAGCAG AAGCATCGACAGGTTGCACGCGGAGAACCGGCGTGCTGGTCACCACATCG AAGCCTTGCggagcctccttggccacgtgACAGGATgcgacctgggaggg agcgggccgGATTTccagatggaggaagtgcgcGAAaccgaggaaaagga agggcgaaTGCTCGcgttggaggacgagactgCCCCTGTCTCCGATGATC AAGCCAGCGGCGTAACCAATATCGCCAGCAGGGGCATCGCTCCGGGTGCG TTTTCCACGACCCAGGCCGCCATCAGCGAAGAGGGCCCCGGCACTTCCCA CGATATACAAGGTGTATACGCCTATTTGAGCAGCCTTGTGGCTTCCGCCA CCTCGacgcttttcccctctgTGGAACCGCTCGGTGGAAGCCTTGCCTCG gccgcctcatcctcttccacctcctacGCCGACCTGCCCTCTCTGGCGTT TCCTGCCAGCACGGGGGCGGGcccaaggaagggggtaCCTACCAGTGTGG AAGACACGCAAGCCTTGTTGATGGGGCAGATATTGGAGAAGTTGCATTTG GCTGAGGACCGCTATGCTTTCCAGGCCGAAGAAATCCATGCGTGCCACAA ACGGCTGGAGGgtttggaggaagaagcggcggcTTTGCGGGCGGAAAAGC AACGGTACGAGCGCCTGCTTCTTGGCTTGAAGAGGGAATTGACGGCCTAC AAGAACAAGCTCCAGGCCCGTGACTACAAGGAAGCGACAATGGAGGTGGA AATCGACCGCTACCGGCACGAGAAACAGCGCATGACGCGCATGTTGAGCG AAGTGGTGGACAGCGCGGCGGCTTCttcggcccctgcctccgccaccaAC ACCCCGGGGTCTCAGGAGCTGGGGGAGTTCTTCCCGCTGCCAGGGGCATC CCCCCTGGGGACGGGGCGGATGCGGGCGCGTGTGGAAATGGCGGCTCTCC AGGCCGAGTTGGATGCGGCAAGGGCGGTGTCGGAGGTagaggtgaggaag agggtggcagCAGAGCACGAACTGAGCGTCTGGCGCAAGGCATTGGCGGA GTCAGGGCCCAGACTGTCGTCCGTGCAGGGGAGCGCGGcaaggcccgggg ggggagagagcgtgtcgggggaggggaagggaccGGGAATAGGCggggtg ggcggagggggccgaagggtggaggacaggtggagcggggaggaagacgt ggaggacagggaagtGACGACCTTGGTCATCAAAGAGCAGCTTTCCAGCC TGCGGGAACTGAACCCGGCTTTCCACGCGAGCTGGGGGGATGCCACGACC GAATGGAAGGTGCGAGGAAGGACCTACATGGCGGACGGGGTCAAGgtagg ggggcgggcggccgAGCCACTCTGCGAACTGGTGCACATGGAGCTTTTCG AGGTGGAGAGTGCCGGCCTTGTGCCCCGGGCGGACCACGTCACGGCCCTC TTTCAGAGGAAAGACGGGGTCTACTCGCGGTGTCAGCTTTTGGCCTCACA GCCCCCCCCGTTCTTGATCATTTTGAACTTTCAAGTACCGGGAAATCCTC CGTGCAGCATGATGTGCTATTTTGCTTTGTgtggagcgaggaggcaaggT TTAGAGAAAGCGCGCGAAAGAGTGAGAAGacggaaagcgagggagggggc ggtggcggcagcAGAGATTATtggcgaggagcaggaggaggaagaggagg aggaggaagcagaggaggaagggatggaggacctgggggacggggagtgt gtgcaggaaaagagggaagaaaagaaatttCTGCGGCTGCTTGCGGAATT TTTGGAAGGGGACGATGAGGAGAAGAACCGGCGTTTCAAATTGATTCCGT CCATCATCGAAGGGCCCGCCTTGGTGCGACTGATGGTTGGGAATAAGCCC GTTTTGCTCGGGAATAAGCTGACCCAACGGTATTGGACAGGCCCCGGGTA CTTGGAGATAGGGATCGATATAGGAAGCTCCGCCATGGCCTCGCGGACGC TGGGTTTTGTGCGGGACGGGAGCAAGAATGTGGTGGTGGAGTTGGCGGTC TTGGtccagggggaggacgagaaggagttgCCGGAGAAAGTGTTGGGCTC CCTGAGGAGTTCGCGACTGGACTGGGGCCTGGCGGAAGGATTGAAAGGCC GATTGGAAGCGGCTGTCATCGCTCGGACGCCCTCCGGCGAGACCTCctaa back to top
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