rna2211, rna2211 (mRNA) Nannochloropsis gaditana

Overview
Namerna2211
Unique Namerna2211
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1437
Alignment locationCM002458.1:1171289..1174454 +

Link to JBrowse

Properties
Property NameValue
Productpleckstriny domain-containing
Orig transcript idgnl|cribi|Naga_100190g8.3126.mrna
Orig protein idgnl|cribi|Naga_100190g8.3126
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1171289..1174454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100190g8gene2114Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2211rna2211-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28475.1cds2203Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2211 ID=rna2211|Name=rna2211|organism=Nannochloropsis gaditana|type=mRNA|length=1437bp
GTGAGGCGATAGATGCAAACGACGGGGCAGAGTCCTCCATGGCTTCACGA
GGCCGAGCGCCGGCGTTTCCGATACCGGTGGGAGGGCGCACCTTCCCTCC
TTCCCGCCCTCTCTCCGTGTACACGGACATGCCCGTCCTCGTACACAGCT
TGGACTTGCCTGCCCGCTTCTATCTCACCGACCATGCTCAGGACGCTGAC
ATCTTGTGGGCGACGCCGGCCTTTTTCGCTTCCCACGTCCCGCAGTCGGC
CCGGGGCCGGAGGCAGTGGAAAGCAACCCTGCCCTTCCTGGGGGAGGTGG
ACGATAAATGCCAGCTGGTGCACCTGCTGACTCGGCTCTCCCACACACGG
TCCCAGCTCTCTATACCCTGGCTGCCTCGCTCCTACTGCCTTCCCGAGGA
CCTTCCGCGGCTTCTCGATGACTGGGAGACCCCTTCCTCCCGCCCGCCCT
CCGCCCCGCCCTCGACCTGGATCCTCAAACCCCCCCATCTGGCTCGAGGA
TGGGATATTGCTCTCACTCGCTCCCTACCCTGTATCCTTCGGCATTTGCA
AGCGTCGGGGAGGCTACTTGTCTCAGACTACCTGACTTCTCCAGACCTGT
GGCTCGACGGACACAAGTACGACCTGCGCATGTACGTCTTGCTCCTCAGC
CCCTCCCTCGTCTTGATCCACAGACAATTCCGAGTTCGGAGGGCTAGCCA
GCCATATTCAATGGCGTTGGAACATTTGGAGGATTTGAGAATACACCTGA
CCAATACTACTTTGGGCCTCAGCGGGCTGGGACAAGCGGACGCGGGAGGC
GAGGAAGGGCATGGATGCCCGACGGAGACCGTCTCCTGCCTCGACTTTGT
GGAGAAGTGGGAAAGCCTGCACCCTGGACGTGAAGGCTGGGAGGGTGTGC
GTCGACGCATCGACAGCATGTTGAGGGAGTGCTTTAGCCTAATAGGAAGG
GCAGGTGGGCGGGAGGGAGGGAGGGAGGCATTGCACGTTCATGATCCCTA
CGGACGGGCCTTGGTAGGTGTGGATGTATTGCTGGACCGTGCGACGCTAT
CACCGCATTTGATCGAGATAAATGCTTCACCGAATATCTCGGGCATGCTA
TCCGAACGTCCCGGGTTCTCCAATGAAGTCTTCTCAGCGGCCTTCATCGA
GGGAGGGTGGCGGGAAGATGGAAACGGCTTTTATCCTTTGATTGATCAGC
AGAATCCCAATGAAGGCTGCTCATGACATCGAGACCATACCGGGGCTTAG
TTACATGAAGGTGTCATGGGAGGCTTGTTGCTTTCACTTGTTGCCCTTTT
TCTCCGAAACGTATAAATTAATAATGTTTGGCTGCAGCGTTGTGTCCTCA
CCCGTTGTTTTTTTGGGATGGAAAACCAAAATTGTATTCTCCAAGATAAC
ATGTATCGATGTCCGGCAAAGCGAAGTAAAAAAGACC
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protein sequence of rna2211

>rna2211-protein ID=rna2211-protein|Name=rna2211|organism=Nannochloropsis gaditana|type=polypeptide|length=824bp
MAYVKRLWKRGVRRQSSFETKPRSDSQTQIDLLLEPSCALANDVDGRPRL
VPGSEASSSRHQQDDRMQQEALVGALQTTVLEQSRKLKDLSRSIDRLHAE
NRRAGHHIEALRSLLGHVTGCDLGGSGPDFQMEEVRETEEKEGRMLALED
ETAPVSDDQASGVTNIASRGIAPGAFSTTQAAISEEGPGTSHDIQGVYAY
LSSLVASATSTLFPSVEPLGGSLASAASSSSTSYADLPSLAFPASTGAGP
RKGVPTSVEDTQALLMGQILEKLHLAEDRYAFQAEEIHACHKRLEGLEEE
AAALRAEKQRYERLLLGLKRELTAYKNKLQARDYKEATMEVEIDRYRHEK
QRMTRMLSEVVDSAAASSAPASATNTPGSQELGEFFPLPGASPLGTGRMR
ARVEMAALQAELDAARAVSEVEVRKRVAAEHELSVWRKALAESGPRLSSV
QGSAARPGGGESVSGEGKGPGIGGVGGGGRRVEDRWSGEEDVEDREVTTL
VIKEQLSSLRELNPAFHASWGDATTEWKVRGRTYMADGVKVGGRAAEPLC
ELVHMELFEVESAGLVPRADHVTALFQRKDGVYSRCQLLASQPPPFLIIL
NFQVPGNPPCSMMCYFALCGARRQGLEKARERVRRRKAREGAVAAAEIIG
EEQEEEEEEEEAEEEGMEDLGDGECVQEKREEKKFLRLLAEFLEGDDEEK
NRRFKLIPSIIEGPALVRLMVGNKPVLLGNKLTQRYWTGPGYLEIGIDIG
SSAMASRTLGFVRDGSKNVVVELAVLVQGEDEKELPEKVLGSLRSSRLDW
GLAEGLKGRLEAAVIARTPSGETS
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mRNA from alignment at CM002458.1:1171289..1174454+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2211 ID=rna2211|Name=rna2211|organism=Nannochloropsis gaditana|type=mRNA|length=3166bp|location=Sequence derived from alignment at CM002458.1:1171289..1174454+ (Nannochloropsis gaditana)
TATGTGCCGCTGGAAATCAAGAGGGCACCAGTGTTTCGCGCGGATTATTG GATCTAGTCCCGCGAATCTCTAACAGGACCCTCGCAGATAAGCCATCAAA ATGGCCTACGTGAAGCGCCTGTGGAAACGGGGCGTGCGTCGACAATCCTC CTTCGAGACCAAGCCAAGGTCCGATTCTCAGACGCAGATCGATTTGCTCT TGGAGCCGTCTTGTGCTCTGGCCAATGACGTCGACGGGCGCCCCCGTCTT GTTCCTGGGAGCGAggcgagcagcagcaggcatCAGCAGGACGACAGAAT GCAGCAAGAAGCCCTGGTCGGGGCCTTGCAGACCACCGTGCTGGAACAAA GTCGCAAGCTGAAAGACTTGAGCAGAAGCATCGACAGGTTGCACGCGGAG AACCGGCGTGCTGGTCACCACATCGAAGCCTTGCggagcctccttggcca cgtgACAGGATgcgacctgggagggagcgggccgGATTTccagatggagg aagtgcgcGAAaccgaggaaaaggaagggcgaaTGCTCGcgttggaggac gagactgCCCCTGTCTCCGATGATCAAGCCAGCGGCGTAACCAATATCGC CAGCAGGGGCATCGCTCCGGGTGCGTTTTCCACGACCCAGGCCGCCATCA GCGAAGAGGGCCCCGGCACTTCCCACGATATACAAGGTGTATACGCCTAT TTGAGCAGCCTTGTGGCTTCCGCCACCTCGacgcttttcccctctgTGGA ACCGCTCGGTGGAAGCCTTGCCTCGgccgcctcatcctcttccacctcct acGCCGACCTGCCCTCTCTGGCGTTTCCTGCCAGCACGGGGGCGGGccca aggaagggggtaCCTACCAGTGTGGAAGACACGCAAGCCTTGTTGATGGG GCAGATATTGGAGAAGTTGCATTTGGCTGAGGACCGCTATGCTTTCCAGG CCGAAGAAATCCATGCGTGCCACAAACGGCTGGAGGgtttggaggaagaa gcggcggcTTTGCGGGCGGAAAAGCAACGGTACGAGCGCCTGCTTCTTGG CTTGAAGAGGGAATTGACGGCCTACAAGAACAAGCTCCAGGCCCGTGACT ACAAGGAAGCGACAATGGAGGTGGAAATCGACCGCTACCGGCACGAGAAA CAGCGCATGACGCGCATGTTGAGCGAAGTGGTGGACAGCGCGGCGGCTTC ttcggcccctgcctccgccaccaACACCCCGGGGTCTCAGGAGCTGGGGG AGTTCTTCCCGCTGCCAGGGGCATCCCCCCTGGGGACGGGGCGGATGCGG GTGGGAagtttggaaggggagggcctgccgccgccgcgccctctcccacc cccgcaCCCCACAACTTCGTCTGTACAGACCCTGGCCCTGGGGCTCGATa ccgggaggggagggagggggggagggacaggtgGTGCCCCCgctgcgccc tccccttccaatgcgtcgggaagggggggcacgggccCGGGACATCCAAG CGGCCATCCCCGGATGCACCCGTCGTCCCCCTTGAAATGCGCCCATGCCG CCCATGCCTTTTCGCCCCAGcggactcccccccccgggaggCGCCActgg cctcccccctcggacCTCGTCGCGAggtcccctcccaccgctgcctcccc cctgccttcttcctccgccgccaccacgcAAGCCCTCACCCAGGCGCGTG TGGAAATGGCGGCTCTCCAGGCCGAGTTGGATGCGGCAAGGGCGGTGTCG GAGGTagaggtgaggaagagggtggcagCAGAGCACGAACTGAGCGTCTG GCGCAAGGCATTGGCGGAGTCAGGGCCCAGACTGTCGTCCGTGCAGGGGA GCGCGGcaaggcccggggggggagagagcgtgtcgggggaggggaaggga ccGGGAATAGGCggggtgggcggagggggccgaagggtggaggacaggtg gagcggggaggaagacgtggaggacagggaagtGACGACCTTGGTCATCA AAGAGCAGCTTTCCAGCCTGCGGGAACTGAACCCGGCTTTCCACGCGAGC TGGGGGGATGCCACGACCGAATGGAAGGTGCGAGGAAGGACCTACATGGC GGACGGGGTCAAGgtaggggggcgggcggccgAGCCACTCTGCGAACTGG TGCACATGGAGCTTTTCGAGGTGGAGAGTGCCGGCCTTGTGCCCCGGGCG GACCACGTCACGGCCCTCTTTCAGAGGAAAGACGGGGTCTACTCGCGGTG TCAGCTTTTGGCCTCACAGCCCCCCCCGTTCTTGATCATTTTGAACTTTC AAGTACCGGGAAATCCTCCGTGCAGCATGATGTGCTATTTTGCTTTGTgt ggagcgaggaggcaaggTTTAGAGAAAGCGCGCGAAAGAGTGAGAAGacg gaaagcgagggagggggcggtggcggcagcAGAGATTATtggcgaggagc aggaggaggaagaggaggaggaggaagcagaggaggaagggatggaggac ctgggggacggggagtgtgtgcaggaaaagagggaagaaaagaaatttCT GCGGCTGCTTGCGGAATTTTTGGAAGGGGACGATGAGGAGAAGAACCGGC GTTTCAAATTGATTCCGTCCATCATCGAAGGGCCCGCCTTGGTGCGACTG ATGGTTGGGAATAAGCCCGTTTTGCTCGGGAATAAGCTGACCCAACGGTA TTGGACAGGCCCCGGGTACTTGGAGATAGGGATCGATATAGGAAGCTCCG CCATGGCCTCGCGGACGCTGGGTTTTGTGCGGGACGGGAGCAAGAATGTG GTGGTGGAGTTGGCGGTCTTGGtccagggggaggacgagaaggagttgCC GGAGAAAGTGTTGGGCTCCCTGAGGAGTTCGCGACTGGACTGGGGCCTGG CGGAAGGATTGAAAGGCCGATTGGAAGCGGCTGTCATCGCTCGGACGCCC TCCGGCGAGACCTCctaaagaaaggaaaggaccgAGGGGCGAAAAGGTGC GCGCGGAGAATGTATAGTGAGGCTTTCATTATGGGTATTTGTATGTCTTT GCCTATCAGATAGAATTACGTTGAGAGTGAAATACTTCTCACTCACTGAC TAGGGGGCAAGACTTAAATGGATAGGATGACCAGGAAGATACAAAAGAAT TACATATTTTAAGAAG
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Coding sequence (CDS) from alignment at CM002458.1:1171289..1174454+

>rna2211 ID=rna2211|Name=rna2211|organism=Nannochloropsis gaditana|type=CDS|length=4950bp|location=Sequence derived from alignment at CM002458.1:1171289..1174454+ (Nannochloropsis gaditana)
ATGGCCTACGTGAAGCGCCTGTGGAAACGGGGCGTGCGTCGACAATCCTC
CTTCGAGACCAAGCCAAGGTCCGATTCTCAGACGCAGATCGATTTGCTCT
TGGAGCCGTCTTGTGCTCTGGCCAATGACGTCGACGGGCGCCCCCGTCTT
GTTCCTGGGAGCGAggcgagcagcagcaggcatCAGCAGGACGACAGAAT
GCAGCAAGAAGCCCTGGTCGGGGCCTTGCAGACCACCGTGCTGGAACAAA
GTCGCAAGCTGAAAGACTTGAGCAGAAGCATCGACAGGTTGCACGCGGAG
AACCGGCGTGCTGGTCACCACATCGAAGCCTTGCggagcctccttggcca
cgtgACAGGATgcgacctgggagggagcgggccgGATTTccagatggagg
aagtgcgcGAAaccgaggaaaaggaagggcgaaTGCTCGcgttggaggac
gagactgCCCCTGTCTCCGATGATCAAGCCAGCGGCGTAACCAATATCGC
CAGCAGGGGCATCGCTCCGGGTGCGTTTTCCACGACCCAGGCCGCCATCA
GCGAAGAGGGCCCCGGCACTTCCCACGATATACAAGGTGTATACGCCTAT
TTGAGCAGCCTTGTGGCTTCCGCCACCTCGacgcttttcccctctgTGGA
ACCGCTCGGTGGAAGCCTTGCCTCGgccgcctcatcctcttccacctcct
acGCCGACCTGCCCTCTCTGGCGTTTCCTGCCAGCACGGGGGCGGGccca
aggaagggggtaCCTACCAGTGTGGAAGACACGCAAGCCTTGTTGATGGG
GCAGATATTGGAGAAGTTGCATTTGGCTGAGGACCGCTATGCTTTCCAGG
CCGAAGAAATCCATGCGTGCCACAAACGGCTGGAGGgtttggaggaagaa
gcggcggcTTTGCGGGCGGAAAAGCAACGGTACGAGCGCCTGCTTCTTGG
CTTGAAGAGGGAATTGACGGCCTACAAGAACAAGCTCCAGGCCCGTGACT
ACAAGGAAGCGACAATGGAGGTGGAAATCGACCGCTACCGGCACGAGAAA
CAGCGCATGACGCGCATGTTGAGCGAAGTGGTGGACAGCGCGGCGGCTTC
ttcggcccctgcctccgccaccaACACCCCGGGGTCTCAGGAGCTGGGGG
AGTTCTTCCCGCTGCCAGGGGCATCCCCCCTGGGGACGGGGCGGATGCGG
GCGCGTGTGGAAATGGCGGCTCTCCAGGCCGAGTTGGATGCGGCAAGGGC
GGTGTCGGAGGTagaggtgaggaagagggtggcagCAGAGCACGAACTGA
GCGTCTGGCGCAAGGCATTGGCGGAGTCAGGGCCCAGACTGTCGTCCGTG
CAGGGGAGCGCGGcaaggcccggggggggagagagcgtgtcgggggaggg
gaagggaccGGGAATAGGCggggtgggcggagggggccgaagggtggagg
acaggtggagcggggaggaagacgtggaggacagggaagtGACGACCTTG
GTCATCAAAGAGCAGCTTTCCAGCCTGCGGGAACTGAACCCGGCTTTCCA
CGCGAGCTGGGGGGATGCCACGACCGAATGGAAGGTGCGAGGAAGGACCT
ACATGGCGGACGGGGTCAAGgtaggggggcgggcggccgAGCCACTCTGC
GAACTGGTGCACATGGAGCTTTTCGAGGTGGAGAGTGCCGGCCTTGTGCC
CCGGGCGGACCACGTCACGGCCCTCTTTCAGAGGAAAGACGGGGTCTACT
CGCGGTGTCAGCTTTTGGCCTCACAGCCCCCCCCGTTCTTGATCATTTTG
AACTTTCAAGTACCGGGAAATCCTCCGTGCAGCATGATGTGCTATTTTGC
TTTGTgtggagcgaggaggcaaggTTTAGAGAAAGCGCGCGAAAGAGTGA
GAAGacggaaagcgagggagggggcggtggcggcagcAGAGATTATtggc
gaggagcaggaggaggaagaggaggaggaggaagcagaggaggaagggat
ggaggacctgggggacggggagtgtgtgcaggaaaagagggaagaaaaga
aatttCTGCGGCTGCTTGCGGAATTTTTGGAAGGGGACGATGAGGAGAAG
AACCGGCGTTTCAAATTGATTCCGTCCATCATCGAAGGGCCCGCCTTGGT
GCGACTGATGGTTGGGAATAAGCCCGTTTTGCTCGGGAATAAGCTGACCC
AACGGTATTGGACAGGCCCCGGGTACTTGGAGATAGGGATCGATATAGGA
AGCTCCGCCATGGCCTCGCGGACGCTGGGTTTTGTGCGGGACGGGAGCAA
GAATGTGGTGGTGGAGTTGGCGGTCTTGGtccagggggaggacgagaagg
agttgCCGGAGAAAGTGTTGGGCTCCCTGAGGAGTTCGCGACTGGACTGG
GGCCTGGCGGAAGGATTGAAAGGCCGATTGGAAGCGGCTGTCATCGCTCG
GACGCCCTCCGGCGAGACCTCctaaATGGCCTACGTGAAGCGCCTGTGGA
AACGGGGCGTGCGTCGACAATCCTCCTTCGAGACCAAGCCAAGGTCCGAT
TCTCAGACGCAGATCGATTTGCTCTTGGAGCCGTCTTGTGCTCTGGCCAA
TGACGTCGACGGGCGCCCCCGTCTTGTTCCTGGGAGCGAggcgagcagca
gcaggcatCAGCAGGACGACAGAATGCAGCAAGAAGCCCTGGTCGGGGCC
TTGCAGACCACCGTGCTGGAACAAAGTCGCAAGCTGAAAGACTTGAGCAG
AAGCATCGACAGGTTGCACGCGGAGAACCGGCGTGCTGGTCACCACATCG
AAGCCTTGCggagcctccttggccacgtgACAGGATgcgacctgggaggg
agcgggccgGATTTccagatggaggaagtgcgcGAAaccgaggaaaagga
agggcgaaTGCTCGcgttggaggacgagactgCCCCTGTCTCCGATGATC
AAGCCAGCGGCGTAACCAATATCGCCAGCAGGGGCATCGCTCCGGGTGCG
TTTTCCACGACCCAGGCCGCCATCAGCGAAGAGGGCCCCGGCACTTCCCA
CGATATACAAGGTGTATACGCCTATTTGAGCAGCCTTGTGGCTTCCGCCA
CCTCGacgcttttcccctctgTGGAACCGCTCGGTGGAAGCCTTGCCTCG
gccgcctcatcctcttccacctcctacGCCGACCTGCCCTCTCTGGCGTT
TCCTGCCAGCACGGGGGCGGGcccaaggaagggggtaCCTACCAGTGTGG
AAGACACGCAAGCCTTGTTGATGGGGCAGATATTGGAGAAGTTGCATTTG
GCTGAGGACCGCTATGCTTTCCAGGCCGAAGAAATCCATGCGTGCCACAA
ACGGCTGGAGGgtttggaggaagaagcggcggcTTTGCGGGCGGAAAAGC
AACGGTACGAGCGCCTGCTTCTTGGCTTGAAGAGGGAATTGACGGCCTAC
AAGAACAAGCTCCAGGCCCGTGACTACAAGGAAGCGACAATGGAGGTGGA
AATCGACCGCTACCGGCACGAGAAACAGCGCATGACGCGCATGTTGAGCG
AAGTGGTGGACAGCGCGGCGGCTTCttcggcccctgcctccgccaccaAC
ACCCCGGGGTCTCAGGAGCTGGGGGAGTTCTTCCCGCTGCCAGGGGCATC
CCCCCTGGGGACGGGGCGGATGCGGGCGCGTGTGGAAATGGCGGCTCTCC
AGGCCGAGTTGGATGCGGCAAGGGCGGTGTCGGAGGTagaggtgaggaag
agggtggcagCAGAGCACGAACTGAGCGTCTGGCGCAAGGCATTGGCGGA
GTCAGGGCCCAGACTGTCGTCCGTGCAGGGGAGCGCGGcaaggcccgggg
ggggagagagcgtgtcgggggaggggaagggaccGGGAATAGGCggggtg
ggcggagggggccgaagggtggaggacaggtggagcggggaggaagacgt
ggaggacagggaagtGACGACCTTGGTCATCAAAGAGCAGCTTTCCAGCC
TGCGGGAACTGAACCCGGCTTTCCACGCGAGCTGGGGGGATGCCACGACC
GAATGGAAGGTGCGAGGAAGGACCTACATGGCGGACGGGGTCAAGgtagg
ggggcgggcggccgAGCCACTCTGCGAACTGGTGCACATGGAGCTTTTCG
AGGTGGAGAGTGCCGGCCTTGTGCCCCGGGCGGACCACGTCACGGCCCTC
TTTCAGAGGAAAGACGGGGTCTACTCGCGGTGTCAGCTTTTGGCCTCACA
GCCCCCCCCGTTCTTGATCATTTTGAACTTTCAAGTACCGGGAAATCCTC
CGTGCAGCATGATGTGCTATTTTGCTTTGTgtggagcgaggaggcaaggT
TTAGAGAAAGCGCGCGAAAGAGTGAGAAGacggaaagcgagggagggggc
ggtggcggcagcAGAGATTATtggcgaggagcaggaggaggaagaggagg
aggaggaagcagaggaggaagggatggaggacctgggggacggggagtgt
gtgcaggaaaagagggaagaaaagaaatttCTGCGGCTGCTTGCGGAATT
TTTGGAAGGGGACGATGAGGAGAAGAACCGGCGTTTCAAATTGATTCCGT
CCATCATCGAAGGGCCCGCCTTGGTGCGACTGATGGTTGGGAATAAGCCC
GTTTTGCTCGGGAATAAGCTGACCCAACGGTATTGGACAGGCCCCGGGTA
CTTGGAGATAGGGATCGATATAGGAAGCTCCGCCATGGCCTCGCGGACGC
TGGGTTTTGTGCGGGACGGGAGCAAGAATGTGGTGGTGGAGTTGGCGGTC
TTGGtccagggggaggacgagaaggagttgCCGGAGAAAGTGTTGGGCTC
CCTGAGGAGTTCGCGACTGGACTGGGGCCTGGCGGAAGGATTGAAAGGCC
GATTGGAAGCGGCTGTCATCGCTCGGACGCCCTCCGGCGAGACCTCctaa
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Synonyms
Publications