rna2208, rna2208 (mRNA) Nannochloropsis gaditana

Overview
Namerna2208
Unique Namerna2208
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1999
Alignment locationCM002458.1:1164281..1165127 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100190g11.3120.mrna
Orig protein idgnl|cribi|Naga_100190g11.3120
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1164281..1165127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100190g11gene2111Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2208rna2208-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28469.1cds2200Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2208 ID=rna2208|Name=rna2208|organism=Nannochloropsis gaditana|type=mRNA|length=1999bp
CGCACCGAGTAAAAAATTCGGCATGGCCCCTATTTTGACATCCAGACGTT
CATTTTCCCATCAAATCCTTTAGTTTTGGCCCGCTGTATCAATATATATT
ATCCCGCCGTACTGCGTCTAAAGAGGACAAACGGGAACGTCAACGACGAA
CGACCTCCTCCCCCCGGTCCTCCCGCTCTCACAAGACTGAGTGAAGACAA
TTCAAAAAGCATCGTGCGAGAGTCTGGGTAAACTTCAGACATGACTGAAG
AATCGTCAGAACGATATGCGGGCCGCGGAGTCTCCTCGACCAAGTCTGAA
GTGCACAACGCGATTAAAAAAATAGACAAGGGCTTGTACCCTCTTGCGTT
TTGCAAAATCATCCCCGACGTCCTCACCAACGATCCAGAATGGGCCCTAG
TAATGCACGCAGACGGCGCGGGCACCAAGTCCTCCCTGGCGTACATGTAT
TGGAAGGAAACCGGGGACCTGAGTGTCTGGAAAGGCATTGCCCAAGACGC
ACTGATCATGAACCTGGATGACCTGCTCTGCGTGGGTGTCACGGACAACA
TCCTCCTTTCGTCCACGATCGGACGCAACAAGCACCTGATCCCGGGGGAG
GTGCTCGCCGCCATCATCAACGGCACGCAGGAGCTCTTGGAAGAGCTGGG
CAAGTGGGGAATCCAGATAACGAGCACGGGGGGGGAAACGGCGGACGTGG
GTGACCTGGTCCGCACGATCATCGTGGACTCGACCGTGACGGCTCGGGTC
AGACGGAGCGACATCGTCGACAATGCCAGGATTCAAGCAGGTGACCTCAT
CGTCGGACTTGCCTCCTATGGCCAAGCTGCCTACGAAGACGGCTACAACG
GGGGCATGGGCTCCAACGGCCTCACCTCCGCCCGGCACGACGTCTTCAAC
CGGAGCCTCGCGACGAAGTACCCGGAGTCCTTCGACCCCCAGTTACCTTC
CTCCCTCGTATACACTGGCAGCAAAAATTTGACCGACTCAGTGGACGGGG
CGCCGTTGGATGCAGGGAAGCTCGTCCTGAGCGCGACTCGAACCTATGCG
CCTGTAATCAAGCGAATTCTGGACAAGCACCGGTCGGACATCCATGGGAT
GGTCCACTGCTCGGGCGGAGCCCAGACGAAAATTTTGCATTTTTTGCGCG
AAGGTTTGCAGGTGGTAAAAGACGCCTTGTTTCCCATCCCTCCTTTGTTC
ACGATGATCCAGGCGGAGTCAGGGACCGAATGGAAGGAGATGTACCAGGT
CTTCAATATGGGCCACCGGATGGAGCTCTATGTTCCCTCCCCTGAGATCG
CGGCGAGTGTGATCGCCCTCTCAGAAGGCCTCGGGGTCCCGGCGCAGGTG
ATAGGGCGGGTGGAGGCCGCCGCAGACGGAGTTAAGAAACAGGTGACGAT
ATCCGGGCCGTATGGCGTCTTTACTTACGTATAGGATGGAAAGGGGAGGG
AGCGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAA
GGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAAAGGGCC
GGTCTGGATGAAACGGGAAGAGAGGGGGAAGGGGGTGACATGAGGGTCGC
AGACTTTAATGGGGGGAAAGAGGAGGTGTGAGGGGGAGATAACAGATCTG
AAGATGATAGACTCTAGTTAGCTGGGATGGGCTTACGACATCAAAATATG
AACTGCTTGAAAAGCACGAGGATGTCAGAGAAGTTGTTTCTTTATGCACG
AACAGCCGTCTCGTGCTCTTACTCCCCGGCTCCCGGTCAAGAAAAAGCTT
TCGGGCCTGCTTTTTCTTGCCGGCAACTACATCCGTCAACTTTGAACGAT
CTCGACTTGCTTCCTCTTGTCTCGTTCGATGTACAGTAACGCTGTCGTAG
CTATTAGTGCGGTTGTATGTGGGATGGCTGCTGTACTTGCGGTGGTTGAT
GTGACAACGGTTGCTCTTGTAGTGTGTGCTGATGGCTTGAGGACAGGTG
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protein sequence of rna2208

>rna2208-protein ID=rna2208-protein|Name=rna2208|organism=Nannochloropsis gaditana|type=polypeptide|length=189bp
MVRLRATRLLHAHSLGNHHDSHTASPLASRLQPPCLPLLLLMLLRVHVML
TFLLVAMDAASSNMSSKAYTRHGIEALKGLLFWAVSIFMPSRDPALFVRL
AVVWMVLTFGYSLLLPVVTLLRAEHRRSSNRRSSMWEEEWLRCLIVLNAL
AGMMIVVKMCLYQGAFRRLLLKDTHKRKRRIRERQMKEQ
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mRNA from alignment at CM002458.1:1164281..1165127+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2208 ID=rna2208|Name=rna2208|organism=Nannochloropsis gaditana|type=mRNA|length=847bp|location=Sequence derived from alignment at CM002458.1:1164281..1165127+ (Nannochloropsis gaditana)
CGGGATAATATATATTGATACAGCGGGCCAAAACTAAAGGATTTGATGGG
AAAATGAACGTCTGGATGTCAAAATAGGGGCCATGCCGAATTTTTTACTC
GGTGCGGCAATTGATTTGAAGCGGCTCGGaagcttgctgctgcttcatCG
CCGCCGACAGGAAGCATTACTCACATGTAGCGGCACGTCCACGCTCTCAC
CTTCTACAACTACCACGACAGGGACCGAGACACCAGTTCATGGTACGCTT
GCGGGCTACACGGCTTTTACATGCCCATTCTCTCGGCAATCACCACGATT
CCCACACCGCGTCACCTTTAGCCTCCCGGCTCCAGCCTCCATGTCTTCCA
CTGCTCCTATTAATGCTCCTTCGCGTGCACGTCATGCtgaccttccttct
cgtcgcAATGGACGCTGCATCCTCGAACATGTCTTCTAAAGCTTACACAC
GCCACGGCATTGAGGCGCTTAAAGGTCTTCTCTTTTGGGCGGTCAGCATC
TTTATGCCCTCTCGtgaccccgccctcttcgTTCGTCTCGCCGTAGTCTG
GATGGTCCTCACTTTTGGTTACAGTCTACTACTCCCTGTTGTAACCTTAC
TTCGCGCGGAGCATCGGCGAAGTTCAAACAGGCGTTCATCaatgtgggag
gaggagtggctgCGATGTCTAATCGTTTTGAATGCACTTGCGGGCATGAT
GATCGTTGTAAAAATGTGTCTATACCAAGGGGCTTTTCGCAGGTTACTAC
TTAAAGACACACACAAAAGGAAAAGACGTATCAGAGAAAGACAAATGAAA
GAACAATGACGTAAAACGAGGATAGGGAAGCCACAAAATGCCTTGGT
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Coding sequence (CDS) from alignment at CM002458.1:1164281..1165127+

>rna2208 ID=rna2208|Name=rna2208|organism=Nannochloropsis gaditana|type=CDS|length=570bp|location=Sequence derived from alignment at CM002458.1:1164281..1165127+ (Nannochloropsis gaditana)
ATGGTACGCTTGCGGGCTACACGGCTTTTACATGCCCATTCTCTCGGCAA
TCACCACGATTCCCACACCGCGTCACCTTTAGCCTCCCGGCTCCAGCCTC
CATGTCTTCCACTGCTCCTATTAATGCTCCTTCGCGTGCACGTCATGCtg
accttccttctcgtcgcAATGGACGCTGCATCCTCGAACATGTCTTCTAA
AGCTTACACACGCCACGGCATTGAGGCGCTTAAAGGTCTTCTCTTTTGGG
CGGTCAGCATCTTTATGCCCTCTCGtgaccccgccctcttcgTTCGTCTC
GCCGTAGTCTGGATGGTCCTCACTTTTGGTTACAGTCTACTACTCCCTGT
TGTAACCTTACTTCGCGCGGAGCATCGGCGAAGTTCAAACAGGCGTTCAT
CaatgtgggaggaggagtggctgCGATGTCTAATCGTTTTGAATGCACTT
GCGGGCATGATGATCGTTGTAAAAATGTGTCTATACCAAGGGGCTTTTCG
CAGGTTACTACTTAAAGACACACACAAAAGGAAAAGACGTATCAGAGAAA
GACAAATGAAAGAACAATGA
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Synonyms
Publications