rna220, rna220 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna220
Unique Name	rna220
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2186
Alignment location	CM002455.1:551448..553858 +

Link to JBrowse

Properties


Property Name	Value
Product	putative ufm1-specific protease
Orig transcript id	gnl\|cribi\|Naga_100100g21.8908.mrna
Orig protein id	gnl\|cribi\|Naga_100100g21.8908
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:551448..553858 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100100g21	gene209	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna220	rna220-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30440.1	cds220	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:551448..553858+
coding sequence from alignment at CM002455.1:551448..553858+

mRNA sequence

>rna220 ID=rna220|Name=rna220|organism=Nannochloropsis gaditana|type=mRNA|length=2186bp
TGCCGCACATCCGATACCCACGCTAGCACTGCACCAAGACAGGGATTCAT
GTCTCCCGAAGACGAGCCTGTTGGGGAGCAGTTTTCCTGTCGGGTCGTTG
ATGACACCCTAGCATGGCTGTCACGCGCTGTCCGTGAAGACGAGAAGGGC
TACTTGGTCGGGCACGCATGTCCGGGCCGGCGCCTGCCCGACGTGTTAGG
CGCACTGGCCCGACGCAAGAACAGTGAGACTTGGATGGATGATGCAAAGG
AGCTTCAATGTCACCTGCCCGCTGGCTTACAAATAGTGGGGCTTTATGGT
CCCTCCGCTATTGAGGATACGAGCCTCCCTAAAAAATTGCAACTTCCTTC
CCCTGGCATTCTTGCTGGAATTGAAAATAGCTCCCTCGCTTTCCGAGACT
TGCAGGGTAGCATTGTCGGAGTACAAGCGACCGATGGCCTGAGTCTGCTG
ATGGCGGACTACGTCATATTGCGCCTTCCATGGAGCTTACCAACCCATTG
GGACGGCAAATTTTCCGAAGAATGCTTGCATCTTTACTTCGAGGCTGTTC
CTGACGCAAGCAAAGGAGGCGGCAGAGTGTTGCCCGTGCCTCTTGGTCAC
TCCTTTTGCTCGAAAGCCCCCGCTCTCGTGGACGTCTTCTCCCACGCCGC
GGTGGGGGGAGCCACTGCTGCAGACGCAATGGCTAGAAGAGATGGCCCTG
ACGCAAAGCAAAGGAATGCTAGGAGCACAAGTTCGGGCAAGAAATGTAGG
AAGGCAAAGGGGGCCGGTAAGGGTGGAGGGAAAAGCCAAGGCCTGGCTGG
GGGAGTGGAGGCGGTGGAGGCTCCTGTCACTCTTGACGACATGGTGCGCT
ACACCCCTATTGGTCCTGTCTTGGACGTAATACTCTTGCACTCCCTCTCA
TCGGACTCCCCCAAGCAAAGCTACGGCGCGCGGATGGCTAAGAACGGGTG
CTTCAGGCACCCAACGGCCATGATGGTCGATAGTGGAACCGAAGGGAAAT
TCTGCGGCATGATAAAAGGCGACTTACTTGTGTACGTGGCACGGAAGGCA
CTCTTCGCGTCAGTCAAAGAAAGCATATTCGCTGGCATGCGGCGGGGGTG
GCACACCGCCCGTCGAAGTCTACTGGCAGCGAAGGGGCAGTGCCCGTGTG
CCCCTTGCTGGGAAGTAAGGCATTTCTATGCACTGGACCCCCGCCACGGC
CTTTCAAACGCTTGTTCTCCCCTCGCTTTTCCTCTGTCCATGACTACAGC
CCTTAGCCTCGTCGGCGCAGACGGAATATGCTTCCCCGGTCAAGAAGACG
ACCGCTCAGACCTGCTCGCAGCAAGGAAGGCGGTTCACGAGCGACTGAAG
TTGCCGCTCAACAGGCCAGCGTTTCGTACTACATGTGCCTTACGGCTTGC
TCCGTCCGCGCTCAGCGTCGGGGACGAGGGGGCCACGGGCGAGCATCAGG
GTCCACGGGTGCTGCAGGACGTGCACACGGGCCTTTCCCGGTCGAGCGTG
GCCGATGGGGCCCAGCACCTGGTCGACGGCTCGTACCTCTTCTACCACTA
CCTGGTAGACCACGTTGACGACAGGGGGTGGGGCTGCGCGTACAGGTCAT
TGCAAACCCTGGTCTCCTTTTTCCGTCTGGCGCACTACACCACAGTGCCC
GTGCCCTCCCACCGAGAGATACAGCAGGTACTGGTCGACATAGGCGATAA
GGCGGATGACTTTGTAGGATCTCACGAATGGATCGGCAGCATGGAAGTAG
GCTACTACCTCGACCAAGCGCTAGGCCTTGAGTGGCGAAGCGTCTCGGCG
CCGTCAGGATTGGGGCTCGCGGAGAGGGCGTCGGAACTTGCCGCGCACTT
CGACTCAGAAGGGACGCCTGTTATGATGGGCGGGGGCAGTCTGGCCTTCA
CTTTGCTAGGGGTGGACTTGAACGAGGCAACCGGAGAAGTAGCCTTCTTG
ATCCTGGACCCCCACTATACGGGGCCCGAGGACTTGGAAGTGGTGCAACA
CAAAGAGATGGTCCTTGCAGGACGCAAGGCCAGGGCGTGCGAATGGCGAT
TGCCGGCAAGCTTTACACAAAATTGTTTTTTTAACTTATGCTTGCCTCAG
CGGCCGAAATTGTATTGACCTGGTCCGCGCACGGCTTGAAGGGCACGTAA
AATCTTTAAAGTATCATTTGTGAATGCTTATGTCCG

protein sequence of rna220

>rna220-protein ID=rna220-protein|Name=rna220|organism=Nannochloropsis gaditana|type=polypeptide|length=605bp
MVPPLLRIRASLKNCNFLPLAFLLELKIAPSLSETCSIVGVQATDGLSLL
MADYVILRLPWSLPTHWDGKFSEECLHLYFEAVPDASKGGGRVLPVPLGH
SFCSKAPALVDVFSHAAVGGATAADAMARRDGPDAKQRNARSTSSGKKCR
KAKGAGKGGGKSQGLAGGVEAVEAPVTLDDMVRYTPIGPVLDVILLHSLS
SDSPKQSYGARMAKNGCFRHPTAMMVDSGTEGKFCGMIKGDLLVYVARKA
LFASVKESIFAGMRRGWHTARRSLLAAKGQCPCAPCWEVRHFYALDPRHG
LSNACSPLAFPLSMTTALSLVGADGICFPGQEDDRSDLLAARKAVHERLK
LPLNRPAFRTTCALRLAPSALSVGDEGATGEHQGPRVLQDVHTGLSRSSV
ADGAQHLVDGSYLFYHYLVDHVDDRGWGCAYRSLQTLVSFFRLAHYTTVP
VPSHREIQQVLVDIGDKADDFVGSHEWIGSMEVGYYLDQALGLEWRSVSA
PSGLGLAERASELAAHFDSEGTPVMMGGGSLAFTLLGVDLNEATGEVAFL
ILDPHYTGPEDLEVVQHKEMVLAGRKARACEWRLPASFTQNCFFNLCLPQ
RPKLY

mRNA from alignment at CM002455.1:551448..553858+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna220 ID=rna220|Name=rna220|organism=Nannochloropsis gaditana|type=mRNA|length=2411bp|location=Sequence derived from alignment at CM002455.1:551448..553858+ (Nannochloropsis gaditana)
TGCCGCACATCCGATACCCACGCTAGCACTGCACCAAGACAGGGATTCAT
GTCTCCCGAAGACGAGCCTGTTGGGGAGCAGTTTTCCTGTCGGGTCGTTG
ATGACACCCTAGCATGGCTGTCACGCGCTGTCCGTGAAGACGAGAAGGGC
TACTTGGTCGGGCACGCATGTCCGGGCCGGCGCCTGCCCGACGTGTTAGG
CGCACTGGCCCGACGCAAGAACAGTGAGACTTGGATGGATGATGCAAAGG
TAATCTTTGAGGGCCTACAGGGTGAGCCACATCAACATGGAAATGAAATA
TTGATGATCGGATTACAGACGTTATCATTGCTTTTGTTACATCTGCTTCC
CCAGGAGCTTCAATGTCACCTGCCCGCTGGCTTACAAATAGTGGGGCTTT
ATGGTCCCTCCGCTATTGAGGATACGAGCCTCCCTAAAAAATTGCaactt
ccttcccctggcaTTCTTGCTGGAATTGAAAATagctccctcgctttccg
aGACTTGCAGGTTCGAACGGGGGTTGTGCATCCTGGCTCGTGATAACAAA
CAAATCCATGTTCCCTGCAAGCACTTTCTTATCTGCATCTTTATGCTTTC
TACTAACTTCCTTCTTCGTACAAATATAAGGGTAGCATTGTCGGAGTACA
AGCGACCGATGGCCTGAGTCTGCTGATGGCGGACTACGTCATATTGCGCC
TTCCATGGAGCTTACCAACCCATTGGGACGGCAAATTTTCCGAAGAATGC
TTGCATCTTTACTTCGAGGCTGTTCCTGACGCAAGCaaaggaggcggcag
agTGTTGCCCGTGCCTCTTGGTCACTCCTTTTGCTCGAAAGCCCCCGCTC
TCGTGGACGTCTTCTCCCACGCCGCGGTGGGGGGAGCCACTGCTGCAGAC
GCAATGGCTAGAAGAGATGGCCCTGACGCAAAGCAAAGGAATGCTAGGAG
CACAAGTTCGGGCAAGAAATGTaggaaggcaaagggggCCGgtaagggtg
gagggaaaagccaaGGCCTGGCtgggggagtggaggcggtggaggctcCT
GTCACTCTTGACGACATGGTGCGCTACACCCCTATTGGTCCTGTCTTGGA
CGTAATACTCTTGCACTCCCTCTCATCGGACTCCCCCAAGCAAAGCTACG
GCGCGCGGATGGCTAAGAACGGGTGCTTCAGGCACCCAACGGCCATGATG
GTCGATAGTGGAACCGAAGGGAAATTCTGCGGCATGATAAAAGGCGACTT
ACTTGTGTACGTGGCACGGAAGGCACTCTTCGCGTCAGTCAAAGAAAGCA
TATTCGCTGGCATGCGGCGGGGGTGGCACACCGCCCGTCGAAGTCTACTG
GCAGCGAAGGGGCAGTGCCCGTGTGCCCCTTGCTGGGAAGTAAGGCATTT
CTATGCACTGGacccccgccacggcctttCAAACGCTTGTTctcccctcg
cttttcctctGTCCATGACTACAGCCCTTAGCCTCGTCGGCGCAGACGGA
ATATGCTTCCCCGGTCAAGAAGACGACCGCTCAGACCTGCTCGCAGCAAG
GAAGGCGGTTCACGAGCGACTGAAGTTGCCGCTCAACAGGCCAGCGTTTC
GTACTACATGTGCCTTACGGCTTGCTCCGTCCGCGCTCAGCGtcggggac
gagggggccACGGGCGAGCATCAGGGTCCACGGGTGCTGCAGGACGTGCA
CACGGGCCTTTCCCGGTCGAGCGTGGCCGATGGGGCCCAGCACCTGGTCG
ACGGCTCGTACCTCTTCTACCACTACCTGGTAGACCACGTTGACGACAGG
GGGTGGGGCTGCGCGTACAGGTCATTGCAAACCCTGGTCTCCTTTTTCCG
TCTGGCGCACTACACCACAGTGCCCGTGCCCTCCCACCGAGAGATACAGC
AGGTACTGGTCGACATAGGCGATAAGGCGGATGACTTTGTAGGATCTCAC
GAATGGATCGGCAGCATGGAAGTAGGCTACTACCTCGACCAAGCGCTAGG
CCTTGAGTGGCGAAGCGTCTCGGCGCCGTCAGGATTGGGGCTCGCGGAGA
GGGCGTCGGAACTTGCCGCGCACTTCGACTCAGAAGGGACGCCTGTTAtg
atgggcgggggcagtCTGGCCTTCACTTTGCTAGGGGTGGACTTGAACGA
GGCAACCGGAGAAGTAGCCTTCTTGATCCTGGACCCCCACTATACGGGGC
CCGAGGACTTGGAAGTGGTGCAACACAAAGAGATGGTCCTTGCAGGACGC
AAGGCCAGGGCGTGCGAATGGCGATTGCCGGCAAGCTTTACACAAAATTG
TTTTTTTAACTTATGCTTGCCTCAGCGGCCGAAATTGTATTGACCTGGTC
CGCGCACGGCTTGAAGGGCACGTAAAATCTTTAAAGTATCATTTGTGAAT
GCTTATGTCCG

Coding sequence (CDS) from alignment at CM002455.1:551448..553858+

>rna220 ID=rna220|Name=rna220|organism=Nannochloropsis gaditana|type=CDS|length=3636bp|location=Sequence derived from alignment at CM002455.1:551448..553858+ (Nannochloropsis gaditana)
ATGGTCCCTCCGCTATTGAGGATACGAGCCTCCCTAAAAAATTGCaactt
ccttcccctggcaTTCTTGCTGGAATTGAAAATagctccctcgctttccg
aGACTTGCAGCATTGTCGGAGTACAAGCGACCGATGGCCTGAGTCTGCTG
ATGGCGGACTACGTCATATTGCGCCTTCCATGGAGCTTACCAACCCATTG
GGACGGCAAATTTTCCGAAGAATGCTTGCATCTTTACTTCGAGGCTGTTC
CTGACGCAAGCaaaggaggcggcagagTGTTGCCCGTGCCTCTTGGTCAC
TCCTTTTGCTCGAAAGCCCCCGCTCTCGTGGACGTCTTCTCCCACGCCGC
GGTGGGGGGAGCCACTGCTGCAGACGCAATGGCTAGAAGAGATGGCCCTG
ACGCAAAGCAAAGGAATGCTAGGAGCACAAGTTCGGGCAAGAAATGTagg
aaggcaaagggggCCGgtaagggtggagggaaaagccaaGGCCTGGCtgg
gggagtggaggcggtggaggctcCTGTCACTCTTGACGACATGGTGCGCT
ACACCCCTATTGGTCCTGTCTTGGACGTAATACTCTTGCACTCCCTCTCA
TCGGACTCCCCCAAGCAAAGCTACGGCGCGCGGATGGCTAAGAACGGGTG
CTTCAGGCACCCAACGGCCATGATGGTCGATAGTGGAACCGAAGGGAAAT
TCTGCGGCATGATAAAAGGCGACTTACTTGTGTACGTGGCACGGAAGGCA
CTCTTCGCGTCAGTCAAAGAAAGCATATTCGCTGGCATGCGGCGGGGGTG
GCACACCGCCCGTCGAAGTCTACTGGCAGCGAAGGGGCAGTGCCCGTGTG
CCCCTTGCTGGGAAGTAAGGCATTTCTATGCACTGGacccccgccacggc
ctttCAAACGCTTGTTctcccctcgcttttcctctGTCCATGACTACAGC
CCTTAGCCTCGTCGGCGCAGACGGAATATGCTTCCCCGGTCAAGAAGACG
ACCGCTCAGACCTGCTCGCAGCAAGGAAGGCGGTTCACGAGCGACTGAAG
TTGCCGCTCAACAGGCCAGCGTTTCGTACTACATGTGCCTTACGGCTTGC
TCCGTCCGCGCTCAGCGtcggggacgagggggccACGGGCGAGCATCAGG
GTCCACGGGTGCTGCAGGACGTGCACACGGGCCTTTCCCGGTCGAGCGTG
GCCGATGGGGCCCAGCACCTGGTCGACGGCTCGTACCTCTTCTACCACTA
CCTGGTAGACCACGTTGACGACAGGGGGTGGGGCTGCGCGTACAGGTCAT
TGCAAACCCTGGTCTCCTTTTTCCGTCTGGCGCACTACACCACAGTGCCC
GTGCCCTCCCACCGAGAGATACAGCAGGTACTGGTCGACATAGGCGATAA
GGCGGATGACTTTGTAGGATCTCACGAATGGATCGGCAGCATGGAAGTAG
GCTACTACCTCGACCAAGCGCTAGGCCTTGAGTGGCGAAGCGTCTCGGCG
CCGTCAGGATTGGGGCTCGCGGAGAGGGCGTCGGAACTTGCCGCGCACTT
CGACTCAGAAGGGACGCCTGTTAtgatgggcgggggcagtCTGGCCTTCA
CTTTGCTAGGGGTGGACTTGAACGAGGCAACCGGAGAAGTAGCCTTCTTG
ATCCTGGACCCCCACTATACGGGGCCCGAGGACTTGGAAGTGGTGCAACA
CAAAGAGATGGTCCTTGCAGGACGCAAGGCCAGGGCGTGCGAATGGCGAT
TGCCGGCAAGCTTTACACAAAATTGTTTTTTTAACTTATGCTTGCCTCAG
CGGCCGAAATTGTATTGAATGGTCCCTCCGCTATTGAGGATACGAGCCTC
CCTAAAAAATTGCaacttccttcccctggcaTTCTTGCTGGAATTGAAAA
TagctccctcgctttccgaGACTTGCAGCATTGTCGGAGTACAAGCGACC
GATGGCCTGAGTCTGCTGATGGCGGACTACGTCATATTGCGCCTTCCATG
GAGCTTACCAACCCATTGGGACGGCAAATTTTCCGAAGAATGCTTGCATC
TTTACTTCGAGGCTGTTCCTGACGCAAGCaaaggaggcggcagagTGTTG
CCCGTGCCTCTTGGTCACTCCTTTTGCTCGAAAGCCCCCGCTCTCGTGGA
CGTCTTCTCCCACGCCGCGGTGGGGGGAGCCACTGCTGCAGACGCAATGG
CTAGAAGAGATGGCCCTGACGCAAAGCAAAGGAATGCTAGGAGCACAAGT
TCGGGCAAGAAATGTaggaaggcaaagggggCCGgtaagggtggagggaa
aagccaaGGCCTGGCtgggggagtggaggcggtggaggctcCTGTCACTC
TTGACGACATGGTGCGCTACACCCCTATTGGTCCTGTCTTGGACGTAATA
CTCTTGCACTCCCTCTCATCGGACTCCCCCAAGCAAAGCTACGGCGCGCG
GATGGCTAAGAACGGGTGCTTCAGGCACCCAACGGCCATGATGGTCGATA
GTGGAACCGAAGGGAAATTCTGCGGCATGATAAAAGGCGACTTACTTGTG
TACGTGGCACGGAAGGCACTCTTCGCGTCAGTCAAAGAAAGCATATTCGC
TGGCATGCGGCGGGGGTGGCACACCGCCCGTCGAAGTCTACTGGCAGCGA
AGGGGCAGTGCCCGTGTGCCCCTTGCTGGGAAGTAAGGCATTTCTATGCA
CTGGacccccgccacggcctttCAAACGCTTGTTctcccctcgcttttcc
tctGTCCATGACTACAGCCCTTAGCCTCGTCGGCGCAGACGGAATATGCT
TCCCCGGTCAAGAAGACGACCGCTCAGACCTGCTCGCAGCAAGGAAGGCG
GTTCACGAGCGACTGAAGTTGCCGCTCAACAGGCCAGCGTTTCGTACTAC
ATGTGCCTTACGGCTTGCTCCGTCCGCGCTCAGCGtcggggacgaggggg
ccACGGGCGAGCATCAGGGTCCACGGGTGCTGCAGGACGTGCACACGGGC
CTTTCCCGGTCGAGCGTGGCCGATGGGGCCCAGCACCTGGTCGACGGCTC
GTACCTCTTCTACCACTACCTGGTAGACCACGTTGACGACAGGGGGTGGG
GCTGCGCGTACAGGTCATTGCAAACCCTGGTCTCCTTTTTCCGTCTGGCG
CACTACACCACAGTGCCCGTGCCCTCCCACCGAGAGATACAGCAGGTACT
GGTCGACATAGGCGATAAGGCGGATGACTTTGTAGGATCTCACGAATGGA
TCGGCAGCATGGAAGTAGGCTACTACCTCGACCAAGCGCTAGGCCTTGAG
TGGCGAAGCGTCTCGGCGCCGTCAGGATTGGGGCTCGCGGAGAGGGCGTC
GGAACTTGCCGCGCACTTCGACTCAGAAGGGACGCCTGTTAtgatgggcg
ggggcagtCTGGCCTTCACTTTGCTAGGGGTGGACTTGAACGAGGCAACC
GGAGAAGTAGCCTTCTTGATCCTGGACCCCCACTATACGGGGCCCGAGGA
CTTGGAAGTGGTGCAACACAAAGAGATGGTCCTTGCAGGACGCAAGGCCA
GGGCGTGCGAATGGCGATTGCCGGCAAGCTTTACACAAAATTGTTTTTTT
AACTTATGCTTGCCTCAGCGGCCGAAATTGTATTGA

Synonyms

Publications