rna2193, rna2193 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2193
Unique Name	rna2193
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1173
Alignment location	CM002458.1:1128963..1130640 +

Link to JBrowse

Properties


Property Name	Value
Product	nad-dependent epimerase dehydratase
Orig transcript id	gnl\|cribi\|Naga_100058g21.4250.mrna
Orig protein id	gnl\|cribi\|Naga_100058g21.4250
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:1128963..1130640 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100058g21	gene2096	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2193	rna2193-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28483.1	cds2185	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:1128963..1130640+
coding sequence from alignment at CM002458.1:1128963..1130640+

mRNA sequence

>rna2193 ID=rna2193|Name=rna2193|organism=Nannochloropsis gaditana|type=mRNA|length=1173bp
GCATGAAAATTGTCTAAACTTCCATGTGCAGCCGCAGAGGTCTTTACAAG
CTTCCACTCATGCATTTCGAGGAAACTCTGGTGCACATCTTGGCTTAATA
ATTCCTTCACGAAGCATATAGGCATGGTGGGAAGTGTGGGCCATGGATAC
TTCTGCGATGCATCCTCGTTTCATGTTCCCACTGTTCCGTCCCTCATCCG
GGACAGCCTCCTTGTGTGGTAAATCCACTCTTAGGTTTCATGATCAAAAG
TATCCCTCCTAACGAATATCTCTTTGCTATTTTAGGCTTGCTTTGGGCCC
TGTGTGTCGACCGTTGTCTGGCGTCGGTCGCAAAGTAGATTCTCCGTCAC
ATCAGACAACGGTCCTTTCGACCCCACCGCCCATTACGCGCATGACAAAT
GCTGAGGAAGCGAGGCATACAAGCAGTTTGGATCTTGATGCAGTAGTACA
TTTGGATGAGACCTGGTATCAGGAAGGTTACCAGGAAGGGGGCGAGGCGG
GAAGGAAACGAGGCCGTCGAGAGGGACGCGCAGTTGGCAAAGCTAAGGGT
TTTGAAATTGGATGCGAACTGGGGTTCTACAAGGCATGCAGCCAGACCTG
GTTGTTTGTCATTAAAGACAGTATTACAGGAGAGGGAGAAAAAGGGAGGA
GCAAGGAATTTGGTGAGATCGCGGCTGCAAAGGCTATGATGGACACAACG
GCTGTGCATAGGGCCATCAGGACATTAGAGGGCATCATAAAGCTCGTGCA
GGACTTTCCTCGACAGAACGTTGCTGATGTTGATATGGCCGCGCACGTAC
AACGGCTTCGAGCCAAGTTTCGAGCGGTTACTTCCATGTTGGGTGTCTCC
GTCAAATTTTCTTTGCATAAGTCAGGCCGGATATCGGATGGGGAAACTGC
GGGCGGGGTGGGAGAACTGTCCTTTTGAAACATAATTATACAGATGAAAA
GCAAGACTAGGTGGGAATACATGAGACTGCGCTGGTGTACATTACATGGT
CGGTAGAAAAGTGCAGTCATTGATGAATATGATTGGAAAATCTTTACAAG
ACGACTAGATGCAGAATTTCCATAAACAAATTCGAGAAGATCGCATTATT
TCTTTCGGCTCTTCTTTTCAGATTTGAACTTTTTGCTTTGCCTGTCTTGT
GAATCTTTACACGCCGCAAACGC

protein sequence of rna2193

>rna2193-protein ID=rna2193-protein|Name=rna2193|organism=Nannochloropsis gaditana|type=polypeptide|length=370bp
MAGDIAPTGTKFTPTNPDTSGIIVTVTGAVGYLGEHLVKTFLEAGYTVRG
TVRDVDDIERLQCLKSLPGATERLSLFAANLLVPGSFDKAIEGATYVLHS
ASPVALEVVADPEGTLIRPAVEGTKNVLTSVHKSTSVRRVVLTGSFRSIF
GLGDEHPKGYVYTEEDWNDKSSLDNNQGYALSKTLAERAAWAFVERVAPT
SWDMVVLNPGLIFGPLLSRYHPDAFSVQFFKQLVTGELPPVKLPWAVVDV
RDVAIVHVRAFQHAPARGRYLVTSGTYSLREMLDCVRDKIWRPLLRVSVP
KPLLWIGFYTGFVGKRLAKEDIKHNVGFRILFDSSKVRKELLPEGFRAPR
QTFRDMYESLQEHKIIGHFN

mRNA from alignment at CM002458.1:1128963..1130640+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2193 ID=rna2193|Name=rna2193|organism=Nannochloropsis gaditana|type=mRNA|length=1678bp|location=Sequence derived from alignment at CM002458.1:1128963..1130640+ (Nannochloropsis gaditana)
ATGGCCGGCGACATTGCCCCAACAGGCACAAAGTTCACTCCTACCAATCC
TGACACAAGTGGAATTATTGTGACAGTGACGGGAGCGGTAGGATACCTTG
GTGAGCATTTGGTCAAAACATTTTTAGAAGCTGGCTATACCGTGCGAGGC
ACCGTGCGCGACGTGGACGATATAGAGAGGCTTCAGTGTTTGAAGTCCCT
TCCCGGTGCCACTGAGCGTCTCAGCCTCTTTGCAGCTAATCTCCTCGTTC
CTGGCTCCTTCGATAAGGCTATAGAAGGAGCCACCTACGTGCTTCATTCC
GCTTCACCGGTAGCTCTGGAAGTTGTCGCTGATCCCGAGGGAACTCTCAT
TCGTCCCGCCGTGGAAGGGACCAAGAATGTCCTCACCTCAGTTCACAAGT
CGACCAGTGTTAGACGCGTTGTATTGACAGGCTCGTTTCGGTCGATTTTT
GGCCTGGGCGACGAGCATCCGAAGGGGTATGTCTATACTGGTACGTCAAT
ACCTCTTTCATTCTACGTTTCCTTTCTCGTATTGTATCCCTTTTATAAGC
ATAAGGGTGGTGTGTTTCTATCGGAAATGGGCCGAATGTAACCATCGTGA
GCCCTCAATAAAGCTTCACCCTCCTGTCAAAccctttttttgggggcaga
ggaggattgGAACGACAAGTCGTCTTTGGACAACAATCAAGGCTACGCTT
TGAGCAAGACACTGGCAGAAAGAGCGGCATGGGCATTTGTGGAACGCGTC
GCACCGACTTCTTGGGACATGGTGGTTCTAAACCCAGGCCTCATCTTCGG
CCCACTTCTTAGTCGGTACCACCCGGATGCCTTCTCAGTTCAATTTTTTA
AGCAGGTAGAAGAAAGTAGACGGGAGAAACTTTTTGGGGTTGAAGGACAG
GATTGGTGATATCATGCCTAAAGTATTGACTTCTTTTcgatttcttcttc
tcttccagctTGTTACAGGCGAATTGCCCCCCGTCAAGCTTCCATGGGCC
GTTGTAGATGTTCGAGATGTCGCCATTGTACACGTGCGTGCCTTTCAACA
CGCACCTGCTCGTGGTCGCTACCTAGTCACCAGCGGCACATACAGCCTTC
GGGAAATGTTGGACTGCGTGCGAGATAAAATCTGGAGGCCACTCCTCCGT
GTTTCAGTGCCTAAGCCCTTATTGTGGATTGGTTTCTACACTGGATTTGT
GGGGAAGAGGCTTGCGAAAGAGGATATTAAACATAACGTCGGTTTCCGGA
TTTTGTTCGATAGTAGCAAAGTCAGAAAAGAGCTTTTACCTGAAGGCTTC
AGGGCCCCGAGACAGACATTTAGAGACATGTATGAGAGCTTACAGGAGCA
CAAAATTATAGGTCATTTTAATTGAATGTGTACAATTTAGGTGTATGATT
GATGCTGAATATGATTTTGTGGCAGAACATCACGTGGCTTCCGAGTCGAC
ATTCGGCGGCCTGAGGATGCAAATCCATCTTAAAGACATTTGATACACGG
TAAGTGCACAAATGTGCTTCGAAGCATAAATATATCACAAGGGTGAAAAT
TTTGTCAGCaaactttttttcttccaaaatGAATGAATCTGGATAAGTAC
GAACAAGAAATTCCGAATGGGGAACACAAGTCGGTAGgtttgcctttctt
ttcgGATCTCGAGCCAAAAGGCATCTTG

Coding sequence (CDS) from alignment at CM002458.1:1128963..1130640+

>rna2193 ID=rna2193|Name=rna2193|organism=Nannochloropsis gaditana|type=CDS|length=3339bp|location=Sequence derived from alignment at CM002458.1:1128963..1130640+ (Nannochloropsis gaditana)
ATGGCCGGCGACATTGCCCCAACAGGCACAAAGTTCACTCCTACCAATCC
TGACACAAGTGGAATTATTGTGACAGTGACGGGAGCGGTAGGATACCTTG
GTGAGCATTTGGTCAAAACATTTTTAGAAGCTGGCTATACCGTGCGAGGC
ACCGTGCGCGACGTGGACGATATAGAGAGGCTTCAGTGTTTGAAGTCCCT
TCCCGGTGCCACTGAGCGTCTCAGCCTCTTTGCAGCTAATCTCCTCGTTC
CTGGCTCCTTCGATAAGGCTATAGAAGGAGCCACCTACGTGCTTCATTCC
GCTTCACCGGTAGCTCTGGAAGTTGTCGCTGATCCCGAGGGAACTCTCAT
TCGTCCCGCCGTGGAAGGGACCAAGAATGTCCTCACCTCAGTTCACAAGT
CGACCAGTGTTAGACGCGTTGTATTGACAGGCTCGTTTCGGTCGATTTTT
GGCCTGGGCGACGAGCATCCGAAGGGGTATGTCTATACTGaggaggattg
GAACGACAAGTCGTCTTTGGACAACAATCAAGGCTACGCTTTGAGCAAGA
CACTGGCAGAAAGAGCGGCATGGGCATTTGTGGAACGCGTCGCACCGACT
TCTTGGGACATGGTGGTTCTAAACCCAGGCCTCATCTTCGGCCCACTTCT
TAGTCGGTACCACCCGGATGCCTTCTCAGTTCAATTTTTTAAGCAGctTG
TTACAGGCGAATTGCCCCCCGTCAAGCTTCCATGGGCCGTTGTAGATGTT
CGAGATGTCGCCATTGTACACGTGCGTGCCTTTCAACACGCACCTGCTCG
TGGTCGCTACCTAGTCACCAGCGGCACATACAGCCTTCGGGAAATGTTGG
ACTGCGTGCGAGATAAAATCTGGAGGCCACTCCTCCGTGTTTCAGTGCCT
AAGCCCTTATTGTGGATTGGTTTCTACACTGGATTTGTGGGGAAGAGGCT
TGCGAAAGAGGATATTAAACATAACGTCGGTTTCCGGATTTTGTTCGATA
GTAGCAAAGTCAGAAAAGAGCTTTTACCTGAAGGCTTCAGGGCCCCGAGA
CAGACATTTAGAGACATGTATGAGAGCTTACAGGAGCACAAAATTATAGG
TCATTTTAATTGAATGGCCGGCGACATTGCCCCAACAGGCACAAAGTTCA
CTCCTACCAATCCTGACACAAGTGGAATTATTGTGACAGTGACGGGAGCG
GTAGGATACCTTGGTGAGCATTTGGTCAAAACATTTTTAGAAGCTGGCTA
TACCGTGCGAGGCACCGTGCGCGACGTGGACGATATAGAGAGGCTTCAGT
GTTTGAAGTCCCTTCCCGGTGCCACTGAGCGTCTCAGCCTCTTTGCAGCT
AATCTCCTCGTTCCTGGCTCCTTCGATAAGGCTATAGAAGGAGCCACCTA
CGTGCTTCATTCCGCTTCACCGGTAGCTCTGGAAGTTGTCGCTGATCCCG
AGGGAACTCTCATTCGTCCCGCCGTGGAAGGGACCAAGAATGTCCTCACC
TCAGTTCACAAGTCGACCAGTGTTAGACGCGTTGTATTGACAGGCTCGTT
TCGGTCGATTTTTGGCCTGGGCGACGAGCATCCGAAGGGGTATGTCTATA
CTGaggaggattgGAACGACAAGTCGTCTTTGGACAACAATCAAGGCTAC
GCTTTGAGCAAGACACTGGCAGAAAGAGCGGCATGGGCATTTGTGGAACG
CGTCGCACCGACTTCTTGGGACATGGTGGTTCTAAACCCAGGCCTCATCT
TCGGCCCACTTCTTAGTCGGTACCACCCGGATGCCTTCTCAGTTCAATTT
TTTAAGCAGctTGTTACAGGCGAATTGCCCCCCGTCAAGCTTCCATGGGC
CGTTGTAGATGTTCGAGATGTCGCCATTGTACACGTGCGTGCCTTTCAAC
ACGCACCTGCTCGTGGTCGCTACCTAGTCACCAGCGGCACATACAGCCTT
CGGGAAATGTTGGACTGCGTGCGAGATAAAATCTGGAGGCCACTCCTCCG
TGTTTCAGTGCCTAAGCCCTTATTGTGGATTGGTTTCTACACTGGATTTG
TGGGGAAGAGGCTTGCGAAAGAGGATATTAAACATAACGTCGGTTTCCGG
ATTTTGTTCGATAGTAGCAAAGTCAGAAAAGAGCTTTTACCTGAAGGCTT
CAGGGCCCCGAGACAGACATTTAGAGACATGTATGAGAGCTTACAGGAGC
ACAAAATTATAGGTCATTTTAATTGAATGGCCGGCGACATTGCCCCAACA
GGCACAAAGTTCACTCCTACCAATCCTGACACAAGTGGAATTATTGTGAC
AGTGACGGGAGCGGTAGGATACCTTGGTGAGCATTTGGTCAAAACATTTT
TAGAAGCTGGCTATACCGTGCGAGGCACCGTGCGCGACGTGGACGATATA
GAGAGGCTTCAGTGTTTGAAGTCCCTTCCCGGTGCCACTGAGCGTCTCAG
CCTCTTTGCAGCTAATCTCCTCGTTCCTGGCTCCTTCGATAAGGCTATAG
AAGGAGCCACCTACGTGCTTCATTCCGCTTCACCGGTAGCTCTGGAAGTT
GTCGCTGATCCCGAGGGAACTCTCATTCGTCCCGCCGTGGAAGGGACCAA
GAATGTCCTCACCTCAGTTCACAAGTCGACCAGTGTTAGACGCGTTGTAT
TGACAGGCTCGTTTCGGTCGATTTTTGGCCTGGGCGACGAGCATCCGAAG
GGGTATGTCTATACTGaggaggattgGAACGACAAGTCGTCTTTGGACAA
CAATCAAGGCTACGCTTTGAGCAAGACACTGGCAGAAAGAGCGGCATGGG
CATTTGTGGAACGCGTCGCACCGACTTCTTGGGACATGGTGGTTCTAAAC
CCAGGCCTCATCTTCGGCCCACTTCTTAGTCGGTACCACCCGGATGCCTT
CTCAGTTCAATTTTTTAAGCAGctTGTTACAGGCGAATTGCCCCCCGTCA
AGCTTCCATGGGCCGTTGTAGATGTTCGAGATGTCGCCATTGTACACGTG
CGTGCCTTTCAACACGCACCTGCTCGTGGTCGCTACCTAGTCACCAGCGG
CACATACAGCCTTCGGGAAATGTTGGACTGCGTGCGAGATAAAATCTGGA
GGCCACTCCTCCGTGTTTCAGTGCCTAAGCCCTTATTGTGGATTGGTTTC
TACACTGGATTTGTGGGGAAGAGGCTTGCGAAAGAGGATATTAAACATAA
CGTCGGTTTCCGGATTTTGTTCGATAGTAGCAAAGTCAGAAAAGAGCTTT
TACCTGAAGGCTTCAGGGCCCCGAGACAGACATTTAGAGACATGTATGAG
AGCTTACAGGAGCACAAAATTATAGGTCATTTTAATTGA

Synonyms

Publications