|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100058g13.4260.mrna |
| Orig protein id | gnl|cribi|Naga_100058g13.4260 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:1097873..1101511 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2186 ID=rna2186|Name=rna2186|organism=Nannochloropsis gaditana|type=mRNA|length=2130bp
ATGCCATCGCCTACAAAACAAGGAGAGACAGACCGGTCCCCAGCTACCGA
GGCCGAGCCATTGCTTTCTCGCGTGGACAGCATCGAATCCTGGGGTCTAT
CCAACCCTGGTGACGCCATCCCCACTACGCGCCACCAACCTATGCGCCAT
CAGCTTTCAGACCCGATCACTGGGCCAAGCAAAGGATGGCGCGATCGCCT
CTCCAATAAAAGTAACATTGAGACGTGGACTTTTCCTGGATGGGGCCGGT
ACAATTTACAAATGACTGTGACGGACGAGGAGCTTGCGGAGATCGAGGCT
GATATGGACCAACAGCAGCCTCCGAAACTGAATCAATGGGAGGCAACAGC
CATCTGCGGAAACGACATCATGGCCAGCTGCTTTTACGTGGTAGGCCTTG
TGACTATGTCCGCAGGCAAGATGGCGCCGCTCGCCTTGCTCTTGGTATCC
TGCGTCTTGTATTTAATCAGGTTTCTGTACGCTGAGGCCATCACCGCCCT
TCCCATGAACGGCGGTTCTTTTAACGTGCTTTTGAACAGCACCAGCAAAG
GCATTGCATCCTCCGCCGCTACACTGGCTCTAGTGTCCTACATTGCCACG
GGGGTAGTCTCGGCCACGAGCGCTGTCGATTACCTGAAGAAGGTAGTGTC
GGTGCCGAACCCCTTACTTGCCATCCTGGGTCTGCTCTTCCTATTTGCCG
TCCTGGTTTTCCTCGGGATAAAGGAGAGCGCAGGCGTCGCCCAAGTCATA
TTCTGGATTCACATATTCACCTTGACTTTGCTTTGTGCCTGCTCTATGGT
CTACGTGGTTGCGGACCCTTCCACTCTTCGCGAAAATTTCCGGGCACCCT
ACCCGGATGTTGAACTTGGTGGAGTGATCCGCTCGGGATCCTTTGCGACG
GCGATTTTTTTCGGCTACACCTCCGCAATTTTGGGCGTGAGTGGCTTCGA
GAGCAGCTCCCAGTTCGTTCAGTCCCAGGCCCCGGGCGTTTTCCTCAAGA
CTCTCCGAAACATGTGGGTGGGCGCATTCGTATTCAACCCGACGATTTCC
TTCCTCTCCCTCGGGGTCTTGCCCCTGGCTCGGATCGTGGAGGACGAGTC
CGTGGTGCTGGCGAAAATGGCCAAGCATGTGGGAGATTGGATGTGCGGGG
GGGCTGGGGCGGGCGTGGAGGCAAGCCGAAGGCTCGGGGCCGGCATGGGG
GGGGGCCGGTGGCTGGAAATTTGGGTCAGTTTGGATGCCTTCCTCGTCTT
GTCCGGTTCCCTATTGACGGCCTACGTGGGCGTGTGTGGGTTGATCGAAC
GCATGGCCTCAGACCGCTGCTTGCCCCAATTCCTCCTCAGGCGGAACCCG
TGGCGTCGGACCACTCATAACATCATCCTGGGCTACCTCGTCTTCTCCGC
GGTCCTGGTGCTCATTTTGGAGGGGAATGTCACGGATCTTAGCGGGGTCT
ACTCGCTCGCATTCCTGTCGGTCTTGCTACTTTTCACCGTGGGCACCATG
CTCCTGAAATTCAAACGGCCGTCCCTTCCCCGCGACGTGACCGTGTCCTG
GATGAGCGTCGTCGTCGCCTTTACCATGATCCTTGTCGGGCTCTTGGGAA
ATTTGATGGGTAATCCTCAAGTCTTGTTGGTTTTCCTTGCCTACGTGGCG
GCCGCAGGGACCTTGGTGCTGCTCATGTTCCAGTGGACGAATCTCTTGAG
ATTCACTGTCTTAGTCTTGAGAGGCATCTGCCCGGGAATCGATACTGGAG
TCTTGCAGAAAGAATTGGCTCTGACCCAGTCCATTCCCGCCATATTTTTC
TGCAAGGCAGATGACGTTTATGTTTTGAATAAGGCTCTGTTGTACGTGAC
AGCGAACGAGCAATCGCGGCATTTGATGGTCATCCATGTGCACGACAAGG
ACCAGTTTCCCCCGCCGCTCCTGTCCACGCATGTCGAAAACTTCGACACC
ATGTACCCAAAGATCAAATGCACATTGTTAACGATCGAAGGCCACTTTGG
ACCCCCATTGATCGAATTCCTGCATCGGGAGTTGAAAGTCCCAATAAACA
TGATGTTTATTGCCGCGCCCGATGAAACGTTTAAATACAAGTTGGACAAG
CTGGGAGGGGTGCGTGTCATCACACACTAG back to topprotein sequence of rna2186 >rna2186-protein ID=rna2186-protein|Name=rna2186|organism=Nannochloropsis gaditana|type=polypeptide|length=1093bp
MEKRSMSGVGKSIREIHKGETAPSTQDLLQASASGSLRTASTLRSFGHNY
LSHAINQQLSLLAVPDGPEIHLYHYCPDRPPRPMRCVLRPPPTPLDRRGE
GTFLGGSGKGIDRDHMNALHVSWCPDAAVPSNLLAVTWPSTLVIYHIELE
APSSASFATSTDGEEGPRLEEASISDEVQAKVLTQVKLGRKPMGLLWHPT
AARPLLCLYDITEITLLQLSRGEREFPPPSSPAASSLSAPVDQGPFYTSS
FTPALPGALEAAAWSLHGRHLAVCMEGVLRVYDWPTSSVLDLPGLDVSAF
TYVDTPLRKRVRAVRPAGPHSFAATSDTDLSLIDPRGGGAPAPFSQSRSR
PSTPRGSPFPPSSPGPTRVLPPACRGSLHVIHAPARPAPPPPGRLNPFSH
PVQIDTGALPHIAMPDLLAVRFLGTSSPGESSTHALVAVGSHTSDTITLL
RLGGLSSLEASAPSSSAAGIHTLFTLTLPPLTRPKGLALLGSRLLLLTGT
REGERVAHIASSFGQFNAHLSIVNLPPSVYHPTHCPSAPRRYRIPFLGIP
RPSRPSSPARLRSSDADAGKPRRPASSLAAVMGRPFPFPCPSPLSHLSSR
PLPPPGTPTGSRAPSRMYPVPPVPVIPSHTVPAPTVRGTRPGGEAPEHAH
AFHPPRPPSWTSHTGAQRSPSPSVTSPGNPVGRMGRGEGNGSRQHLGLDA
RAPPPVGNSRHRPLSTTPSSTGGIGDRNPSPARLTGLGPSHATSLVSRPT
PPLPLQRPQSVAFGTFPRAHTPTRSDQGASVTAAFSSSLPPHRPLSRAAP
PPPPPLPPSKPPPSYPHPPPPPPPPPPPPPPPPPPRYDPTARPHPTPSLR
HLSSSPTQTSYPSSPTTCFLPRPSPPPTPFSVAAPAPGTLHPPASPLWKT
APPAFSPTPLSSHDSTRAQEAPRPPSATCFLPFSTSFSLSAPPTGNSIRG
LPSPPPSLPPPPPLLPLPLLLPLAPTHSIKQGLTRRQCRSLWPHDRPGPA
RSASILPPPGPAPSRRSTHHPETSLFPCFGHAAILPLSSPSFSLARLLLP
VSTPRSSQRPPCPPPHPPARLSRHPAFPFQARPCGTSSPWREL back to topmRNA from alignment at CM002458.1:1097873..1101511+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2186 ID=rna2186|Name=rna2186|organism=Nannochloropsis gaditana|type=mRNA|length=3639bp|location=Sequence derived from alignment at CM002458.1:1097873..1101511+ (Nannochloropsis gaditana)
TCGACGGCGTGAAGAAGAACACATCCGTTTCTTGAATGTGAAGGCTTCAG
CCTTGTACAACTTAAAGTGTCTTACAGTTTTCAACGTACAATTAGGACga
catggaaaaaagaagcatgTCAGGAGTTGGAAAGTCTATAAGAGAAATAC
ATAAGGGAGAAACCGCACCATCGACACAAGATCTCCTTCAGGCCAGCGCG
TCAGGCTCGTTGCGAACGGCGAGTACTCTTCGTTCGTTTGGCCACAATTA
CCTGTCCCACGCGATAAACCAGCAACTCAGCTTACTGGCGGTACCAGATG
GCCCCGAAATTCACCTGTATCACTACTGCCCCGACCGGCCTCCTCGACCA
ATGAGATGCGTTCTacgccctccgcccacccCACTAGATAGACGAGGTGA
GGGCACTTTCCTCGGAGGCAGCGGCAAGGGAATCGATCGAGACCACATGA
ATGCCCTCCATGTGAGCTGGTGTCCCGATGCAGCCGTGCCCAGCAATCTG
CTTGCCGTCACTTGGCCTTCAACCCTGGTAATTTACCACATAGAGCTGGA
GGCGCCGTCATCGGCGTCGTTTGCGACCTCAACAGATGGTGAAGAGGGGC
CACGTCTAGAAGAAGCATCCATCTCAGACGAAGTGCAGGCAAAGGTGCTT
ACACAGGTCAAGCTCGGTCGCAAGCCAATGGGCCTGTTGTGGCACCCGAC
GGCGGCGCGTCCCCTCTTGTGCCTGTACGACATCACGGAaatcaccctcc
tccagctaTCGCGAGGTGAGAGGGagtttccccctccctcttcccccgcc
gcgtcctcgctGTCTGCACCTGTGGATCAAGGGCCCTTCtacacgtcctc
cttcaccccagccctccctggggccttggaggcggcagcCTGGAGCTTGC
ACGGGCGGCACTTGGCCGTGTGCATGGAGGGGGTCCTGCGCGTTTACGAT
TGGCCGACGAGCTCTGTCCTGGACCTTCCCGGCCTGGACGTTTCTGCTTT
CACGTACGTGGACACCCCGCTTCGAAAACGCGTCCGGGCAGTGCGTCCTG
CGGGGCCGCACAGCTTTGCTGCCACCAGCGACACGGACCTCAGCCTGATC
GATccccgggggggcggggcgccGGCGCCGTTTTCCCAGAGTCGAAGCCG
TCCCAGCACGCCCCGGGGCagcccgttccctccctccagccctggTCCTA
CCCGGGTGCTGCCCCCAGCCTGCCGAGGCTCCCTCCACGTCATCCAcgcg
cccgcccgccccgccccccccccgcccggacgGCTCAACCCCTTCTCCCA
TCCCGTCCAGATTGACACCGGGGCCCTTCCCCACATCGCCATGCCGGACC
TCTTGGCCGTCCGGTTCCTGGGGACCTCCTCGCCCGGCGAGTCCTCCACG
CATGCCCTGGTCGCCGTCGGGAGCCACACCTCGGACACAatcaccctcct
ccgtctcggtggcctgtcctccctcgaggcctccgccccgtcctcgtccg
ccgcggGCATCCACACCCTCTTCACCCTCACCTTGCCCCCACTTACGCGC
CCCAAGGGCCTGGCCTTGCTcggctcccgcctccttcttctcaccGGCAC
ccgcgagggggagagagtggCCCATATTGCCTCCTCGTTCGGGCAGTTCA
ACGCCCACCTGAGCATTGTCAACCTGCCTCCATCCGTTTACCACCCTACC
CATTGCCCCAGTGCCCCCAGGCGCTACcgcattcccttcctcggcatCCC
ACGGccttctcgcccctcttctcctgcgcGGCTTCGCAGCTCGGACGCCG
ATGCCGGAAAACCCCGACGGCCGGCCAGCAGCCTGGCGGCCGTCATGGgc
cgcccttttccctttccttgcccctcGCCGTTGTcgcacctctcctcccg
gcctctccctcccccgggcacGCCCACTGGCAGCAGGGCCCCGTCGCGCA
TGTATCCCGTGCCGCCGGTTCCTGTCATCCCTTCCCAcaccgtccccgcc
ccgacTGTCCGGGGAAcgcgacccggaggagaggccCCTGAGCATGCCCA
CGCGTTCCacccgccacgcccacctTCCTGGACAAGCCATACTGGCGCCC
AACGTtcaccctcgccctcggtAACCTCCCCGGGAAATCCTGTCGGCCGC
ATGGGAAGGGGTGAGGGCAACGGGAGCAGGCAGCACCTTGGTCTTGACGc
tcgcgccccccctccggtGGGGAACAGCAGGCACAGACCGctctccacca
cgccttcctccacgggcgGCATAGGCGACCGCaacccttcccctgcccgt
CTCACGGGCCTGGGCCCCAGCCATGCCACGAGCCTGGTATCCCGCccgac
cccgcccctccccctccagcggCCCCAATCGGTCGCCTTTGGGACGTTCC
CACGGGCTCATACACCGACACGGTCGGACCAAGGCGCGTCTGTGACGGCA
GCGTTTTCATCCTCGCTGCCCCCGCACCGGCCGCTCTCCCgcgcggcccc
tcccccccctcctccccttcctccctccaagcctcctccctcgtacccgc
atcctcctccccctcctccccctccccctccccctccccctcctcctccc
ccccctcgatACGACCCCACGGCCAGGCCCCACCCCACTCCCAGCCTCCG
TCAcctatcctcctcccccacgcagACTTCCtacccctcctcgcccacca
cttgcttcctccctcgcccttcccctcctccgacccccttctccgtcgcc
gcgcccgcccccgggaccctccacccccccgccagcccacTGTGGAAAAC
GGCGccccccgccttttccccgacgccactttcctcccacgACTCCACGC
GCGCACAAGAGGccccacgcccgccttcGGCCAcctgctttcttcctttc
tctacatccttctctctttccgcGCCACCTACCGGCAATTCCATCCGAGg
cctcccatctcctcctccctccttgcctcctcctccccccctcctccctc
tccccctcctcctccctctcgccccaACCCATTCAATCAAGCAAGGACTC
ACGCGACGCCAGTGCCGCAGCCTTTGGCCCCACGATCGGCCGGGGCCAGC
GCGATCAGCGagcatcctccccccccccgggcccgcccCCTCACGCCGCT
CGACACACCACCCAGagacctccctcttcccctgcttcgGCCATGCCGCA
ATtcttccactttcctccccctctttctccctcgcccgtctcctcctccc
tgtcagCACCCCACGATCCTCTCagcgccctccttgtccccccccccatc
cgccgGCCAGGCTCTCGCGccaccctgccttccccttccaggcCCGGCCC
TGCGGAACATCAAGCCCTTGGCGGGAGCTCTAGTCGACCCCTTTCCCGCA
CCTCGCCAGCCCCTTGCCAGCCGCAACCCGCGACGAGTTTTCTCTCTGCT
TCgctgcccccacctcccccgtcgGCCAATCCTACGACCTGGGCTGCCAC
GACCAAGcccttggccgccgcgcCGACAGGCACCGGTCCTCGCCACGATT
CTGTTCCGGTAGCCACGCATGTCTCGTCCTCGGATAGGCGGGGTGAGATA
GGAGGTCGCGGGCAAGTTGAGGAGGGAgcctggccttcc back to topCoding sequence (CDS) from alignment at CM002458.1:1097873..1101511+ >rna2186 ID=rna2186|Name=rna2186|organism=Nannochloropsis gaditana|type=CDS|length=3282bp|location=Sequence derived from alignment at CM002458.1:1097873..1101511+ (Nannochloropsis gaditana)
atggaaaaaagaagcatgTCAGGAGTTGGAAAGTCTATAAGAGAAATACA
TAAGGGAGAAACCGCACCATCGACACAAGATCTCCTTCAGGCCAGCGCGT
CAGGCTCGTTGCGAACGGCGAGTACTCTTCGTTCGTTTGGCCACAATTAC
CTGTCCCACGCGATAAACCAGCAACTCAGCTTACTGGCGGTACCAGATGG
CCCCGAAATTCACCTGTATCACTACTGCCCCGACCGGCCTCCTCGACCAA
TGAGATGCGTTCTacgccctccgcccacccCACTAGATAGACGAGGTGAG
GGCACTTTCCTCGGAGGCAGCGGCAAGGGAATCGATCGAGACCACATGAA
TGCCCTCCATGTGAGCTGGTGTCCCGATGCAGCCGTGCCCAGCAATCTGC
TTGCCGTCACTTGGCCTTCAACCCTGGTAATTTACCACATAGAGCTGGAG
GCGCCGTCATCGGCGTCGTTTGCGACCTCAACAGATGGTGAAGAGGGGCC
ACGTCTAGAAGAAGCATCCATCTCAGACGAAGTGCAGGCAAAGGTGCTTA
CACAGGTCAAGCTCGGTCGCAAGCCAATGGGCCTGTTGTGGCACCCGACG
GCGGCGCGTCCCCTCTTGTGCCTGTACGACATCACGGAaatcaccctcct
ccagctaTCGCGAGGTGAGAGGGagtttccccctccctcttcccccgccg
cgtcctcgctGTCTGCACCTGTGGATCAAGGGCCCTTCtacacgtcctcc
ttcaccccagccctccctggggccttggaggcggcagcCTGGAGCTTGCA
CGGGCGGCACTTGGCCGTGTGCATGGAGGGGGTCCTGCGCGTTTACGATT
GGCCGACGAGCTCTGTCCTGGACCTTCCCGGCCTGGACGTTTCTGCTTTC
ACGTACGTGGACACCCCGCTTCGAAAACGCGTCCGGGCAGTGCGTCCTGC
GGGGCCGCACAGCTTTGCTGCCACCAGCGACACGGACCTCAGCCTGATCG
ATccccgggggggcggggcgccGGCGCCGTTTTCCCAGAGTCGAAGCCGT
CCCAGCACGCCCCGGGGCagcccgttccctccctccagccctggTCCTAC
CCGGGTGCTGCCCCCAGCCTGCCGAGGCTCCCTCCACGTCATCCAcgcgc
ccgcccgccccgccccccccccgcccggacgGCTCAACCCCTTCTCCCAT
CCCGTCCAGATTGACACCGGGGCCCTTCCCCACATCGCCATGCCGGACCT
CTTGGCCGTCCGGTTCCTGGGGACCTCCTCGCCCGGCGAGTCCTCCACGC
ATGCCCTGGTCGCCGTCGGGAGCCACACCTCGGACACAatcaccctcctc
cgtctcggtggcctgtcctccctcgaggcctccgccccgtcctcgtccgc
cgcggGCATCCACACCCTCTTCACCCTCACCTTGCCCCCACTTACGCGCC
CCAAGGGCCTGGCCTTGCTcggctcccgcctccttcttctcaccGGCACc
cgcgagggggagagagtggCCCATATTGCCTCCTCGTTCGGGCAGTTCAA
CGCCCACCTGAGCATTGTCAACCTGCCTCCATCCGTTTACCACCCTACCC
ATTGCCCCAGTGCCCCCAGGCGCTACcgcattcccttcctcggcatCCCA
CGGccttctcgcccctcttctcctgcgcGGCTTCGCAGCTCGGACGCCGA
TGCCGGAAAACCCCGACGGCCGGCCAGCAGCCTGGCGGCCGTCATGGgcc
gcccttttccctttccttgcccctcGCCGTTGTcgcacctctcctcccgg
cctctccctcccccgggcacGCCCACTGGCAGCAGGGCCCCGTCGCGCAT
GTATCCCGTGCCGCCGGTTCCTGTCATCCCTTCCCAcaccgtccccgccc
cgacTGTCCGGGGAAcgcgacccggaggagaggccCCTGAGCATGCCCAC
GCGTTCCacccgccacgcccacctTCCTGGACAAGCCATACTGGCGCCCA
ACGTtcaccctcgccctcggtAACCTCCCCGGGAAATCCTGTCGGCCGCA
TGGGAAGGGGTGAGGGCAACGGGAGCAGGCAGCACCTTGGTCTTGACGct
cgcgccccccctccggtGGGGAACAGCAGGCACAGACCGctctccaccac
gccttcctccacgggcgGCATAGGCGACCGCaacccttcccctgcccgtC
TCACGGGCCTGGGCCCCAGCCATGCCACGAGCCTGGTATCCCGCccgacc
ccgcccctccccctccagcggCCCCAATCGGTCGCCTTTGGGACGTTCCC
ACGGGCTCATACACCGACACGGTCGGACCAAGGCGCGTCTGTGACGGCAG
CGTTTTCATCCTCGCTGCCCCCGCACCGGCCGCTCTCCCgcgcggcccct
cccccccctcctccccttcctccctccaagcctcctccctcgtacccgca
tcctcctccccctcctccccctccccctccccctccccctcctcctcccc
cccctcgatACGACCCCACGGCCAGGCCCCACCCCACTCCCAGCCTCCGT
CAcctatcctcctcccccacgcagACTTCCtacccctcctcgcccaccac
ttgcttcctccctcgcccttcccctcctccgacccccttctccgtcgccg
cgcccgcccccgggaccctccacccccccgccagcccacTGTGGAAAACG
GCGccccccgccttttccccgacgccactttcctcccacgACTCCACGCG
CGCACAAGAGGccccacgcccgccttcGGCCAcctgctttcttcctttct
ctacatccttctctctttccgcGCCACCTACCGGCAATTCCATCCGAGgc
ctcccatctcctcctccctccttgcctcctcctccccccctcctccctct
ccccctcctcctccctctcgccccaACCCATTCAATCAAGCAAGGACTCA
CGCGACGCCAGTGCCGCAGCCTTTGGCCCCACGATCGGCCGGGGCCAGCG
CGATCAGCGagcatcctccccccccccgggcccgcccCCTCACGCCGCTC
GACACACCACCCAGagacctccctcttcccctgcttcgGCCATGCCGCAA
Ttcttccactttcctccccctctttctccctcgcccgtctcctcctccct
gtcagCACCCCACGATCCTCTCagcgccctccttgtccccccccccatcc
gccgGCCAGGCTCTCGCGccaccctgccttccccttccaggcCCGGCCCT
GCGGAACATCAAGCCCTTGGCGGGAGCTCTAG back to top
|