rna2184, rna2184 (mRNA) Nannochloropsis gaditana

Overview
Namerna2184
Unique Namerna2184
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1992
Alignment locationCM002458.1:1093447..1094842 -

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Properties
Property NameValue
ProductSET domain protein
Orig transcript idgnl|cribi|Naga_100058g11.4262.mrna
Orig protein idgnl|cribi|Naga_100058g11.4262
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1093447..1094842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100058g11gene2087Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2184rna2184-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28495.1cds2176Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2184 ID=rna2184|Name=rna2184|organism=Nannochloropsis gaditana|type=mRNA|length=1992bp
ACATGGACAGGAGTCTGCGAATACTGGTACTGCGCCCTGTCAATGTCGTC
GACCTGAAGCCCGCGTGTACGTCCTTGGGTCAGCTCGACCTGTTTGGCCA
CAAGACCAAGCCCTCGTCTCCTGCGCCGTCGGTCTCCCACTGCAGCCATG
TCTATCCGTGCCCGCCCGGTGCATCCTGGGATGGCCAGTTGCCTTAGATT
TGTTTTGCGGCGCGTTTTGCCATTCATTTTAGCCTTCGCATGCAGCATTT
TGAAGACCAACGCGAGTGGAAGTGCCCCGTGGGGAGCATCCACTGCTCGA
ACCCTGTCTGTCCCGAGTGGAGGTAGGTTTCCGTCGATGCTACCGGCAGC
GACTAAATTCCCATGTCGTTAATGCATCGTATGGCAATCCATGGTGCAGG
TTTGTAGCCCGTACCTCTAAAACTGAGAATATCTGAACAACGGGGTAGTC
ATCTAATTGTCCTCCTTTTCCACGCAAACCAACAGGCGTGAAAAAAAGCC
GGATACACCGCATGAATGAGGAGAAAAAATTGCCTCCGCTCCCTTCAAAT
CTAACAGTAAGCATCGTGACCTGGAACATGGCGGAGAAGTCTCCGTCCTT
GTCGGACGTGGTGCTTGTGGCCCGTAGTGCAGAGGTGCATCGGTCGGACC
TGTGCGTCGTCGGCGCCCAGGAACTCGAGAATTTAAAACCCCGACGGCAC
GAGGGATCGCGTTCCCGGGAGTGGCGGCGGCTTCTCCTCCACGTCTTCGG
CCGGACCCACATGCTTCTGTGTTTGACCAAGCTGGGGGGGATGCAGCTGG
CGGTGCTGGCCAAGCGACCCCTCCTTCCTTACCTCTCCCCCCTCCATGTC
TGCGAGGTCCCCTGTGGGGTGGGCAACCTCTTGCACAACAAAGGGGGCCA
GGCCGTGCTCTTCCGGGTAGCGACGCACACGTCCTTCCTCTTTATCAACG
CCCACTTGGCGGCCCATGCCCATCGGGTGGAAGATCGGAACGGGGACGTG
GACCGGGTGATGACGGAGGTGCAGAGCCTCCTTGCGTTCTCACTGCCCGG
GCGGGAAGGAAGGAGGGCCCGTGCGTCCAAGGAATCGATCCCCCTCTCTT
CGTCATTCCCCGAGCGACAACCCCACCAACCTCCGCCTTCCGCGCTGGTG
AAAAAGGTGGACCGTTTGTTTTTCCTGGGAGATTTGAATTACCGTTTGGA
ACTTCCGCGGGAAGACATCGAAGTGCCCTTGCGTCGGGTCAAGAACGCCA
AGGTCTCCTTGGAGGAAGCGGTGGCCCGTCTCCTGGAATACGACCAGCTC
AGCATCGAACGGCTGGAAAAACGTCGGGTTTTTGAGGGGATGGTGGAAAG
TCCCGTGCATTTTTTACCCACCTTCAAGTTCAACAAGGGCCGGGACCGGT
ACGACACCTCGCCCAAGAAGCGGGCGCCCGCTTGGACGGATCGGATCCTG
TTCAAGGCTTGCGAAGGGCGTGTCCGATGTGAGAAGTACGACTCGGTAGG
AGGGGCGCGCCACAGCGATCACAGGCCAGTGGTGGGGGTGTTCGTTGTGC
CGTTGGAAGGGGGGGAGGGGGCGGTGGGGAGTGCGGGCGGGCGGGAAGGG
AAAGAAACGAAGGCGCAGAATAGTCCTCCAGGCCATGGAGAGAAGGTGAT
CCCGAACGAGGGGGGGGAGGAGAGGGAGGAGGAGGGGGAGGAGGGGGAGG
AGGATTTGGTGGAGGAGTTGGTGGAGGAGGAGGAGGAAGAGGAAGAAGAG
GAAAAAGTAGGGGAAGAGGAGGAAGGCGAGGATGAAAGTGACGATGACTC
TGGGTATGAGAGTGAGGATGAGGAGGAGGATGACACGGACAGTGACTTCT
GATGAGGTGACGCACATTTATCAGGTTCCTACACTAAAAGCACCCGCGTC
CCCCATTTGTGACTGATTTAGGCGTGTGAAATGCCACACGCAACTGAGTA
TTAATGCACAATGAAAGCAATAAAGCAAACTTTGCTCGGAGA
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protein sequence of rna2184

>rna2184-protein ID=rna2184-protein|Name=rna2184|organism=Nannochloropsis gaditana|type=polypeptide|length=258bp
MLRRSASRDFPNLNKRRDVSVCLPMARNLSLKNRATLQPFGGKGRPFMVK
LRSGAYHTEKGSIQALLQEVDALVPCLAVRPSSIHGAGDGLWTSVDLPAQ
KPLVLYYGDLRREKAQGRYCIQVGPKLTLDAEAVHSFVCDNADATVDVEN
GHLRYGSMLNLGRYVNDAKGQPDMQNNLRYGRLLRFDEFDEDVAGAPKKR
ESRPPCVVMYSTRKIRAGEELLASYGTVYWARWGSLLAEPSNFSPDICNL
SEKKKVCV
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mRNA from alignment at CM002458.1:1093447..1094842-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2184 ID=rna2184|Name=rna2184|organism=Nannochloropsis gaditana|type=mRNA|length=1396bp|location=Sequence derived from alignment at CM002458.1:1093447..1094842- (Nannochloropsis gaditana)
ATGCTGCGAAGATCAGCGTCTCGAGATTTCCCCAATTTGAATAAGCGAGT
AATTAAGATAACGTTTCTGGGGCGTTTGATTGCAGTACAGCTCCAATATT
CATTGAAAGGTTCATTTAGAATATGGTATTGCATGTGCCCGATGTACGGT
TGTGATCGATTTACACCGTACGCCGAGTAAATGCTTTTTCTCTCGCTGTC
CGGCGGCGAAACTCTTGCGGTCGAATTCGATCACAAGTGGTACAGCTTAT
CCTCTATGTGACTCCCATATCACAGCTTATGATGCAGGTCATAATACGGG
CTTCGCTGGCCGTTGCTAATATTGTCGCAGCCGTGTACCTCCTGGCTTGT
GAAACATACATGAAGCAGTGATGGTTCATGCAATGCACAACGCTACGCAC
CAGGTCCCTATCTCAAATTATTGCGATCTCTTTTCTTGCATTATGTGCAG
TTGCAGTGCAAATTATCGGGGCAAAGAGCAAAGGGTAAACGGTCTTGACG
TGCGGCGAAGAGAGACGTCAGTGTCTGCCTTCCGATGTAGGTTTTCCCTC
CTCTTTTTCTTTTGAGAGCAAGGAAATGTGGTTGTCGACGCCTTTGGTTC
AGTGCCTCTGCATTTGTGCCCTTACCGAAGGTTTGAAGGTAATCATTCGA
ACCTTAATCCCACAAACACATTTATTTACTCATTGGAATTCAGGGCACGC
AATCTATCGCTCAAGAATCGAGCAACGCTTCAACCTTTTGGGGGCAAAGG
ACGCCCGTTCATGGTAAAACTCCGTTCAGGCGCTTATCACACCGAAAAGG
GTTCCATCCAAGCTCTCTTGCAAGAAGTGGACGCTCTCGTGCCATGTTTA
GCGGTCCGACCGTCCTCCATCCATGGAGCCGGGGACGGTCTGTGGACATC
CGTAGACCTCCCCGCGCAAAAACCACTTGTCTTGTACTACGGCGATTTAC
GACGCGAGAAGGCACAGGGTCGGTATTGTATTCAGGTTGGCCCCAAACTG
ACGCTTGATGCCGAGGCTGTACATTCCTTTGTATGTGACAACGCCGACGC
GACAGTTGATGTAGAAAACGGACACTTGCGTTATGGAAGCATGCTGAATT
TAGGTCGGTACGTGAATGACGCGAAGGGACAACCGGACATGCAGAACAAT
TTAAGATACGGCCGACTTTTGAGGTTCGATGAATTCGATGAGGACGTTGC
CGGGGCACCAAAAAAGAGGGAAAGCAGGCCTCCCTGTGTGGTCATGTATA
GCACGCGGAAGATCCGAGCCGGGGAGGAGTTGCTCGCGTCGTATGGGACT
GTTTACTGGGCGCGCTGGGGAAGCTTGCTTGCGGAACCTTCGAATTTCAG
CCCTGACATCTGCAACTTGTCGGAAAAGAAGAAAGTATGCGTATGA
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Coding sequence (CDS) from alignment at CM002458.1:1093447..1094842-

>rna2184 ID=rna2184|Name=rna2184|organism=Nannochloropsis gaditana|type=CDS|length=2331bp|location=Sequence derived from alignment at CM002458.1:1093447..1094842- (Nannochloropsis gaditana)
GGCACGCAATCTATCGCTCAAGAATCGAGCAACGCTTCAACCTTTTGGGG
GCAAAGGACGCCCGTTCATGGTAAAACTCCGTTCAGGCGCTTATCACACC
GAAAAGGGTTCCATCCAAGCTCTCTTGCAAGAAGTGGACGCTCTCGTGCC
ATGTTTAGCGGTCCGACCGTCCTCCATCCATGGAGCCGGGGACGGTCTGT
GGACATCCGTAGACCTCCCCGCGCAAAAACCACTTGTCTTGTACTACGGC
GATTTACGACGCGAGAAGGCACAGGGTCGGTATTGTATTCAGGTTGGCCC
CAAACTGACGCTTGATGCCGAGGCTGTACATTCCTTTGTATGTGACAACG
CCGACGCGACAGTTGATGTAGAAAACGGACACTTGCGTTATGGAAGCATG
CTGAATTTAGGTCGGTACGTGAATGACGCGAAGGGACAACCGGACATGCA
GAACAATTTAAGATACGGCCGACTTTTGAGGTTCGATGAATTCGATGAGG
ACGTTGCCGGGGCACCAAAAAAGAGGGAAAGCAGGCCTCCCTGTGTGGTC
ATGTATAGCACGCGGAAGATCCGAGCCGGGGAGGAGTTGCTCGCGTCGTA
TGGGACTGTTTACTGGGCGCGCTGGGGAAGCTTGCTTGCGGAACCTTCGA
ATTTCAGCCCTGACATCTGCAACTTGTCGGAAAAGAAGAAAGTATGCGTA
TGAAGAGACGTCAGTGTCTGCCTTCCGATATGCTGCGAAGATCAGCGTCT
CGAGATTTCCCCAATTTGAATAAGCGAGGCACGCAATCTATCGCTCAAGA
ATCGAGCAACGCTTCAACCTTTTGGGGGCAAAGGACGCCCGTTCATGGTA
AAACTCCGTTCAGGCGCTTATCACACCGAAAAGGGTTCCATCCAAGCTCT
CTTGCAAGAAGTGGACGCTCTCGTGCCATGTTTAGCGGTCCGACCGTCCT
CCATCCATGGAGCCGGGGACGGTCTGTGGACATCCGTAGACCTCCCCGCG
CAAAAACCACTTGTCTTGTACTACGGCGATTTACGACGCGAGAAGGCACA
GGGTCGGTATTGTATTCAGGTTGGCCCCAAACTGACGCTTGATGCCGAGG
CTGTACATTCCTTTGTATGTGACAACGCCGACGCGACAGTTGATGTAGAA
AACGGACACTTGCGTTATGGAAGCATGCTGAATTTAGGTCGGTACGTGAA
TGACGCGAAGGGACAACCGGACATGCAGAACAATTTAAGATACGGCCGAC
TTTTGAGGTTCGATGAATTCGATGAGGACGTTGCCGGGGCACCAAAAAAG
AGGGAAAGCAGGCCTCCCTGTGTGGTCATGTATAGCACGCGGAAGATCCG
AGCCGGGGAGGAGTTGCTCGCGTCGTATGGGACTGTTTACTGGGCGCGCT
GGGGAAGCTTGCTTGCGGAACCTTCGAATTTCAGCCCTGACATCTGCAAC
TTGTCGGAAAAGAAGAAAGTATGCGTATGAAGAGACGTCAGTGTCTGCCT
TCCGATATGCTGCGAAGATCAGCGTCTCGAGATTTCCCCAATTTGAATAA
GCGAGGCACGCAATCTATCGCTCAAGAATCGAGCAACGCTTCAACCTTTT
GGGGGCAAAGGACGCCCGTTCATGGTAAAACTCCGTTCAGGCGCTTATCA
CACCGAAAAGGGTTCCATCCAAGCTCTCTTGCAAGAAGTGGACGCTCTCG
TGCCATGTTTAGCGGTCCGACCGTCCTCCATCCATGGAGCCGGGGACGGT
CTGTGGACATCCGTAGACCTCCCCGCGCAAAAACCACTTGTCTTGTACTA
CGGCGATTTACGACGCGAGAAGGCACAGGGTCGGTATTGTATTCAGGTTG
GCCCCAAACTGACGCTTGATGCCGAGGCTGTACATTCCTTTGTATGTGAC
AACGCCGACGCGACAGTTGATGTAGAAAACGGACACTTGCGTTATGGAAG
CATGCTGAATTTAGGTCGGTACGTGAATGACGCGAAGGGACAACCGGACA
TGCAGAACAATTTAAGATACGGCCGACTTTTGAGGTTCGATGAATTCGAT
GAGGACGTTGCCGGGGCACCAAAAAAGAGGGAAAGCAGGCCTCCCTGTGT
GGTCATGTATAGCACGCGGAAGATCCGAGCCGGGGAGGAGTTGCTCGCGT
CGTATGGGACTGTTTACTGGGCGCGCTGGGGAAGCTTGCTTGCGGAACCT
TCGAATTTCAGCCCTGACATCTGCAACTTGTCGGAAAAGAAGAAAGTATG
CGTATGAAGAGACGTCAGTGTCTGCCTTCCGATATGCTGCGAAGATCAGC
GTCTCGAGATTTCCCCAATTTGAATAAGCGA
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Synonyms
Publications