rna2172, rna2172 (mRNA) Nannochloropsis gaditana

Overview
Namerna2172
Unique Namerna2172
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1837
Alignment locationCM002458.1:1065075..1065518 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100131g2.7456.mrna
Orig protein idgnl|cribi|Naga_100131g2.7456
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1065075..1065518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100131g2gene2075Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2172rna2172-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28511.1cds2164Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2172 ID=rna2172|Name=rna2172|organism=Nannochloropsis gaditana|type=mRNA|length=1837bp
AGGGCTGACTCTTCATTCCACATGAGCAACTAGAATTGAGTCTACCATAT
TATATTTTTGGCATGGCTCTCGTGGAATCACCCAAAAGAAATAAAATGGC
TTGGGAGACGCAGCACGTGTGCTATGGGTGGGAGGTTGCACAGCGACATG
TGTGTTGTAGAGCCGATGAGAAGCCTTGCGATGAAGACCAATGATGAAGA
GGGATGTAAAAGCAAAATATTTTCATCAAAGTGTTGGACTTTTCTTTTAG
GCTCTCACCTCGACACCTTTCAGAACAAGAATACATCTCCACACATTACA
CAGCACCTCGGAAAGGCGAGCAGCGTCAAGATGAAGATAGGAACACCGTG
TAATGGACCCATCACAACAAGTTTGAATTTCTGTATGTGGTCCATTACAT
GGAATACTTTGATCAAAAAAGGTGCTGCAGTTACTACCCGCAGTGGTGCC
GGTCAACCCATTATTATAGGAATGGCAGCTGAGCAAGTGCGAACACAATT
AGCAGCACCAGATTTTGCCGCGAGAGCTGAATTGCAGCAGCCAGGAGACG
TTGCATTCGTAAATAATCTAGTTGTCAAGACAGCTAACACTGGCATTCTT
CGGAGCGTTGATATACATGAAAGGCTGAGCGGCATGGCGCAAGAGGTAGC
GAGACTCACACGCGATCCCGCCGGACAAGTTGGTAGACTTTTTCAAGCTA
GCATTGGCCAAGTACAGAGCCACAAGGTGGCTTTTGGTATAGCAGGTATT
GCAGCCCTAAGCAGTGCGGTGTTTTTCTGCGGTCCATCCACGTTGGATAT
TGTGCTGAGTGACGTGGCTTGCTACACACAGGGAAACACCGAATACGAGG
AAAATGAGTATGCACATAAAGGCAAGGTCCATTTGAACATAATACATGAA
TGGGTCATACGTTGCCAGGCATTTAAGCGCTGCAGCGAAAATTTTATCTT
TAAGCATGACCAGATTTTACCTCGGGTGGAACAGGCTAGTCAGTCCCAAA
GTTTGGGAGGAGAAGGGGATTCCAATCAGCGGTCGGAAACTCCTCCAAAA
TCAAATGTTGAGTGCATCGAAGATCAATATGCAGACGCTAAAAGTAAGTC
GGAGGAAAGCGAAATACTCTTTGGGGACACTCAAAGTAGATATTGCTTCG
TAACTTTTGATGTCAAAAATGATGAGCAAGACATAATATGGAAGCAAACA
CAAGAGGATTCAATAGTTCACACAGCAATACAACAACGTTTTACAAACGG
GAAAGGCGATGTAGGGAAGAAGTCGCTTGGAGACGATTTAATGGTTGAGG
CCATGATTAATCGGGACGTCATTGCATGGATACTCGTCTGGGCATTGTTT
GGTATACTTGTGGTACTGAAGGAGAAGACCTTTTTGTACCTTTGCAGCGT
AGCGGCGATATCTCTCAATGTCTTTGCCCTTTGGTTTGAGAGGATGCCAT
CTTATGATGACTATCGCTCGAGATTTTTGACCTCATCATGGAGTCTTCAA
GACACTCGGCAAGACTTGGTCTCCGTCGAAACGATTCTTGTGACTATCCA
TTGGCTGGCACACCTGCTAAGCTTTTATGCCGTTTTTCAGCTGATAAGCT
CCATTTGGTCAGGGGTTGCAACACCATTTTCTCCGTTACCAATATTGGGA
TCAATTTGGAGAAATTATAACGTGCGATAGGTGATACTCGTCTTTCTGGC
ATTACCGTGACCTGAAGGCAAATGAAGTTGTGTGCATGTCAAGTCTGGGA
GAAGGGTGTTAAGCCAAATAATTGAGGTTACTCTTCTCTGAATTAATCAT
TTGACAAAAGAGCATACGAACAAAGATGGTTTTCTGT
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protein sequence of rna2172

>rna2172-protein ID=rna2172-protein|Name=rna2172|organism=Nannochloropsis gaditana|type=polypeptide|length=126bp
MFAHDVGEYCHCFMIRYLPLHATCAVAFSNDDIQTAFSSGTTATDATLRI
VTKAGAEKPMEICALLNAASMSPFEDVAHIILPPSGTPQPYHPTCSCPLR
LKDGVPTKCKNHKRWEAIAIQIWCIS
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mRNA from alignment at CM002458.1:1065075..1065518-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2172 ID=rna2172|Name=rna2172|organism=Nannochloropsis gaditana|type=mRNA|length=444bp|location=Sequence derived from alignment at CM002458.1:1065075..1065518- (Nannochloropsis gaditana)
ATGTTTGCACATGATGTTGGCGAGTATTGCCATTGTTTTATGATTCGCTA
TCTTCCCCTCCACGCAACATGTGCAGTGGCATTTTCTAACGATGACATCC
AAACGGCGTTCAGCAGCGGCACTACCGCAACGGATGCGACACTACGCATC
GTGACCAAGGCGGGAGCAGAGAAACCGATGGAGATATGCGCGCTGCTGAA
TGCCGCTTCGATGTCACCGTTCGAAGACGTCGCCCACATTATTCTCCCTC
CTTCTGGGTTTGGGCGGGCCCCTGCCTAACTTCGTGGCTCAAGTGGAGCT
AGTTCGAGGTCCTGAAAAAGTACCCCCCAACCCTACCACCCAACTTGCTC
GTGTCCATTGCGTTTGAAAGATGGCGTCCCCACGAAGTGCAAAAACCATA
AAAGATGGGAAGCAATAGCTATTCAAATTTGGTGTATATCTTAG
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Coding sequence (CDS) from alignment at CM002458.1:1065075..1065518-

>rna2172 ID=rna2172|Name=rna2172|organism=Nannochloropsis gaditana|type=CDS|length=762bp|location=Sequence derived from alignment at CM002458.1:1065075..1065518- (Nannochloropsis gaditana)
TACCCCCCAACCCTACCACCCAACTTGCTCGTGTCCATTGCGTTTGAAAG
ATGGCGTCCCCACGAAGTGCAAAAACCATAAAAGATGGGAAGCAATAGCT
ATTCAAATTTGGTGTATATCTTAGATGTTTGCACATGATGTTGGCGAGTA
TTGCCATTGTTTTATGATTCGCTATCTTCCCCTCCACGCAACATGTGCAG
TGGCATTTTCTAACGATGACATCCAAACGGCGTTCAGCAGCGGCACTACC
GCAACGGATGCGACACTACGCATCGTGACCAAGGCGGGAGCAGAGAAACC
GATGGAGATATGCGCGCTGCTGAATGCCGCTTCGATGTCACCGTTCGAAG
ACGTCGCCCACATTATTCTCCCTCCTTCTGGTACCCCCCAACCCTACCAC
CCAACTTGCTCGTGTCCATTGCGTTTGAAAGATGGCGTCCCCACGAAGTG
CAAAAACCATAAAAGATGGGAAGCAATAGCTATTCAAATTTGGTGTATAT
CTTAGATGTTTGCACATGATGTTGGCGAGTATTGCCATTGTTTTATGATT
CGCTATCTTCCCCTCCACGCAACATGTGCAGTGGCATTTTCTAACGATGA
CATCCAAACGGCGTTCAGCAGCGGCACTACCGCAACGGATGCGACACTAC
GCATCGTGACCAAGGCGGGAGCAGAGAAACCGATGGAGATATGCGCGCTG
CTGAATGCCGCTTCGATGTCACCGTTCGAAGACGTCGCCCACATTATTCT
CCCTCCTTCTGG
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Synonyms
Publications