rna2171, rna2171 (mRNA) Nannochloropsis gaditana

Overview
Namerna2171
Unique Namerna2171
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1101
Alignment locationCM002458.1:1063158..1064994 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100131g3.7467.mrna
Orig protein idgnl|cribi|Naga_100131g3.7467
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1063158..1064994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100131g3gene2074Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2171rna2171-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28522.1cds2163Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2171 ID=rna2171|Name=rna2171|organism=Nannochloropsis gaditana|type=mRNA|length=1101bp
AGTTACTTTGGCTTATCAACATTTTTATTACGTCATGATGTGCACGACAT
AGCAGGCGAAGGATCAAGTCAGGTTTTCCATCGCAGAGCGGCGACACATC
AGTATCCTTCGACGCTTGTGAGCTTCCCAGCGACCGTCGGGCTACATACA
TAAAGTTGATCAATTGTGGCATTTCATAAGATAATGTCGAACTGGGAGCG
CCTTCAGATTAAAATCTTAAAGGCTGAAGAAGAACGGGTCAAGAAAAAGG
CTGCAGCGTCGAATATCGGAGCTGGTACCTCCCAGAAGCCATCAATGTCT
GATTTATCCCAAGGGAAGCCGACACAGATTGCACGCTCTGCTCCAAAACA
CAAAAGAAAGCGGCGAGAGATATCAGAGGCTGTACGAGAGGCTGAAAGAG
CGCGAGAAGCAGGGAAAGAAAAAGAGGATCGGCTTCGATCTCTAACGCTA
AGCGCGGACGATATGACAGTGATGGAGAAATCTTTGTACGTAGGTTTGGA
CTGTGAAATGGTTGGAGTGGGCGATGGAGGCAAGAGAAGTGCTCTGGCAC
GTGTTACACTGGTGGATTTCGATGGCCGTGTCATCTATGACGAGCATGTC
AGACCTAGGGAGCGTATCACAGACTTTCGTACTTGGGTGAGCGGGGTAAA
AGCCAAGCACTTGAAAGCGGCGCTGTCCCTTAAGGAATGCATCCTGCAAG
TCGCTGATTTAGTAAAGGGGAAGATTATCGTGGGACACGCCCTCAAAAAC
GATTTACAAGTCTTGATGCTTCAGCATCCCGTAGCGATGATTCGAGACAC
GGCCAGATACCGTGCCTATATGCGATCGCACGGAAAGGAGGGTGGGAAGC
TCCGTCCAAGACGTTTGAAAGATCTGGCGCTTGATTTTTTGGGTATGGAA
ATTCAAGAAGGGAAGCACGACTCTGCGGATGATGCCCGTGCAGCCATGTT
ACTTTATCGCGCTCAACGAACAGAGTGGGAGAAAGAGCTAAGGAAGACGC
ACTTGCATAGGTACACGAAAGCCAATGGAAAGAAAAAGCGCAATCTTAGA
GATGGGATGCAGGCACCTTAGATAAAAAGAACAAGCATTTCGAACACAAA
T
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protein sequence of rna2171

>rna2171-protein ID=rna2171-protein|Name=rna2171|organism=Nannochloropsis gaditana|type=polypeptide|length=518bp
MGGRLHSDMCVVEPMRSLAMKTNDEEGCKSKIFSSKCWTFLLGSHLDTFQ
NKNTSPHITQHLGKASSVKMKIGTPCNGPITTSLNFCMWSITWNTLIKKG
AAVTTRSGAGQPIIIGMAAEQVRTQLAAPDFAARAELQQPGDVAFVNNLV
VKTANTGILRSVDIHERLSGMAQEVARLTRDPAGQVGRLFQASIGQVQSH
KVAFGIAGIAALSSAVFFCGPSTLDIVLSDVACYTQGNTEYEENEYAHKG
KVHLNIIHEWVIRCQAFKRCSENFIFKHDQILPRVEQASQSQSLGGEGDS
NQRSETPPKSNVECIEDQYADAKSKSEESEILFGDTQSRYCFVTFDVKND
EQDIIWKQTQEDSIVHTAIQQRFTNGKGDVGKKSLGDDLMVEAMINRDVI
AWILVWALFGILVVLKEKTFLYLCSVAAISLNVFALWFERMPSYDDYRSR
FLTSSWSLQDTRQDLVSVETILVTIHWLAHLLSFYAVFQLISSIWSGVAT
PFSPLPILGSIWRNYNVR
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mRNA from alignment at CM002458.1:1063158..1064994+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2171 ID=rna2171|Name=rna2171|organism=Nannochloropsis gaditana|type=mRNA|length=1837bp|location=Sequence derived from alignment at CM002458.1:1063158..1064994+ (Nannochloropsis gaditana)
AGGGCTGACTCTTCATTCCACATGAGCAACTAGAATTGAGTCTACCATAT
TATATTTTTGGCATGGCTCTCGTGGAATCACCCAAAAGAAATAAAATGGC
TTGGGAGACGCAGCACGTGTGCTATGGGTGGGAGGTTGCACAGCGACATG
TGTGTTGTAGAGCCGATGAGAAGCCTTGCGATGAAGACCAATGATGAAGA
GGGATGTAAAAGCAAAATATTTTCATCAAAGTGTTGGACTTTTCTTTTAG
GCTCTCACCTCGACACCTTTCAGAACAAGAATACATCTCCACACATTACA
CAGCACCTCGGAAAGGCGAGCAGCGTCAAGATGAAGATAGGAACACCGTG
TAATGGACCCATCACAACAAGTTTGAATTTCTGTATGTGGTCCATTACAT
GGAATACTTTGATCAAAAAAGGTGCTGCAGTTACTACCCGCAGTGGTGCC
GGTCAACCCATTATTATAGGAATGGCAGCTGAGCAAGTGCGAACACAATT
AGCAGCACCAGATTTTGCCGCGAGAGCTGAATTGCAGCAGCCAGGAGACG
TTGCATTCGTAAATAATCTAGTTGTCAAGACAGCTAACACTGGCATTCTT
CGGAGCGTTGATATACATGAAAGGCTGAGCGGCATGGCGCAAGAGGTAGC
GAGACTCACACGCGATCCCGCCGGACAAGTTGGTAGACTTTTTCAAGCTA
GCATTGGCCAAGTACAGAGCCACAAGGTGGCTTTTGGTATAGCAGGTATT
GCAGCCCTAAGCAGTGCGGTGTTTTTCTGCGGTCCATCCACGTTGGATAT
TGTGCTGAGTGACGTGGCTTGCTACACACAGGGAAACACCGAATACGAGG
AAAATGAGTATGCACATAAAGGCAAGGTCCATTTGAACATAATACATGAA
TGGGTCATACGTTGCCAGGCATTTAAGCGCTGCAGCGAAAATTTTATCTT
TAAGCATGACCAGATTTTACCTCGGGTGGAACAGGCTAGTCAGTCCCAAA
gtttgggaggagaaggggattCCAATCAGCGGTCGGAAACTCCTCCAAAA
TCAAATGTTGAGTGCATCGAAGATCAATATGCAGACGCTAAAAGTAAgtc
ggaggaaagcgaaaTACTCTTTGGGGACACTCAAAGTAGATATTGCTTCG
TAACTTTTGATGTCAAAAATGATGAGCAAGACATAATATGGAAGCAAACA
CAAGAGGATTCAATAGTTCACACAGCAATACAACAACGTTTTACAAACGG
GAAAGGCGATGTAGGGAAGAAGTCGCTTGGAGACGATTTAATGGTTGAGG
CCATGATTAATCGGGACGTCATTGCATGGATACTCGTCTGGGCATTGTTT
GGTATACTTGTGGTACTGAAGGAGAAGACCTTTTTGTACCTTTGCAGCGT
AGCGGCGATATCTCTCAATGTCTTTGCCCTTTGGTTTGAGAGGATGCCAT
CTTATGATGACTATCGCTCGAGATTTTTGACCTCATCATGGAGTCTTCAA
GACACTCGGCAAGACTTGGTCTCCGTCGAAACGATTCTTGTGACTATCCA
TTGGCTGGCACACCTGCTAAGCTTTTATGCCGTTTTTCAGCTGATAAGCT
CCATTTGGTCAGGGGTTGCAACACCATTTTCTCCGTTACCAATATTGGGA
TCAATTTGGAGAAATTATAACGTGCGATAGGTGATACTCGTCTTTCTGGC
ATTACCGTGACCTGAAGGCAAATGAAGTTGTGTGCATGTCAAGTCTGGGA
GAAGGGTGTTAAGCCAAATAATTGAGGTTACTCTTCTCTGAATTAATCAT
TTGACAAAAGAGCATACGAACAAAGATGGTTTTCTGT
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Coding sequence (CDS) from alignment at CM002458.1:1063158..1064994+

>rna2171 ID=rna2171|Name=rna2171|organism=Nannochloropsis gaditana|type=CDS|length=1557bp|location=Sequence derived from alignment at CM002458.1:1063158..1064994+ (Nannochloropsis gaditana)
ATGGGTGGGAGGTTGCACAGCGACATGTGTGTTGTAGAGCCGATGAGAAG
CCTTGCGATGAAGACCAATGATGAAGAGGGATGTAAAAGCAAAATATTTT
CATCAAAGTGTTGGACTTTTCTTTTAGGCTCTCACCTCGACACCTTTCAG
AACAAGAATACATCTCCACACATTACACAGCACCTCGGAAAGGCGAGCAG
CGTCAAGATGAAGATAGGAACACCGTGTAATGGACCCATCACAACAAGTT
TGAATTTCTGTATGTGGTCCATTACATGGAATACTTTGATCAAAAAAGGT
GCTGCAGTTACTACCCGCAGTGGTGCCGGTCAACCCATTATTATAGGAAT
GGCAGCTGAGCAAGTGCGAACACAATTAGCAGCACCAGATTTTGCCGCGA
GAGCTGAATTGCAGCAGCCAGGAGACGTTGCATTCGTAAATAATCTAGTT
GTCAAGACAGCTAACACTGGCATTCTTCGGAGCGTTGATATACATGAAAG
GCTGAGCGGCATGGCGCAAGAGGTAGCGAGACTCACACGCGATCCCGCCG
GACAAGTTGGTAGACTTTTTCAAGCTAGCATTGGCCAAGTACAGAGCCAC
AAGGTGGCTTTTGGTATAGCAGGTATTGCAGCCCTAAGCAGTGCGGTGTT
TTTCTGCGGTCCATCCACGTTGGATATTGTGCTGAGTGACGTGGCTTGCT
ACACACAGGGAAACACCGAATACGAGGAAAATGAGTATGCACATAAAGGC
AAGGTCCATTTGAACATAATACATGAATGGGTCATACGTTGCCAGGCATT
TAAGCGCTGCAGCGAAAATTTTATCTTTAAGCATGACCAGATTTTACCTC
GGGTGGAACAGGCTAGTCAGTCCCAAAgtttgggaggagaaggggattCC
AATCAGCGGTCGGAAACTCCTCCAAAATCAAATGTTGAGTGCATCGAAGA
TCAATATGCAGACGCTAAAAGTAAgtcggaggaaagcgaaaTACTCTTTG
GGGACACTCAAAGTAGATATTGCTTCGTAACTTTTGATGTCAAAAATGAT
GAGCAAGACATAATATGGAAGCAAACACAAGAGGATTCAATAGTTCACAC
AGCAATACAACAACGTTTTACAAACGGGAAAGGCGATGTAGGGAAGAAGT
CGCTTGGAGACGATTTAATGGTTGAGGCCATGATTAATCGGGACGTCATT
GCATGGATACTCGTCTGGGCATTGTTTGGTATACTTGTGGTACTGAAGGA
GAAGACCTTTTTGTACCTTTGCAGCGTAGCGGCGATATCTCTCAATGTCT
TTGCCCTTTGGTTTGAGAGGATGCCATCTTATGATGACTATCGCTCGAGA
TTTTTGACCTCATCATGGAGTCTTCAAGACACTCGGCAAGACTTGGTCTC
CGTCGAAACGATTCTTGTGACTATCCATTGGCTGGCACACCTGCTAAGCT
TTTATGCCGTTTTTCAGCTGATAAGCTCCATTTGGTCAGGGGTTGCAACA
CCATTTTCTCCGTTACCAATATTGGGATCAATTTGGAGAAATTATAACGT
GCGATAG
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Synonyms
Publications