rna2167, rna2167 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2167
Unique Name	rna2167
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	747
Alignment location	CM002458.1:1056339..1058348 -

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Properties


Property Name	Value
Product	apoptosis inducing factor
Orig transcript id	gnl\|cribi\|Naga_100131g7.7464.mrna
Orig protein id	gnl\|cribi\|Naga_100131g7.7464
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:1056339..1058348 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100131g7	gene2070	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2167	rna2167-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28519.1	cds2159	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:1056339..1058348-
coding sequence from alignment at CM002458.1:1056339..1058348-

mRNA sequence

>rna2167 ID=rna2167|Name=rna2167|organism=Nannochloropsis gaditana|type=mRNA|length=747bp
ATGACCGGCGCCGGGGAAGCCGCCACTCAAGCACACGCCAGCAAGAATAG
CACTGGATCGCCCTCGGGGCCACCGGAGCAAGCCGATCAACGCCATTTCT
GGGACACCTTGTGGATTAATGAACCCATGCCTCGGTTTGATATGCGGTGC
GCCTCCCCTTGCTTGATCCGTTACCTTGCCGAGGGGAAAATCCCTTTGAC
AGGCCGCGCTTTGGTGCCCGGATGTGGAAGAGGATACGATCTCCTTGCTT
TGGCAACGGCAGCCGGGGCGAAATGGTCCGAGGTGTTGGGGATGGACCTG
TCCCCAACAGGAGTGGCGGCTGCGCAAGCTTACATCAAAGAAGGCGAGGC
AGAGGAGGATAAAAAGAGGACATGCCGCGTGGAGCACAGTGATTTCTTTG
AATACACTTTGTCCACTTATGATGAAAAATTCAGCTTCATATACGACTAC
ACTTTTGCCTGTGCGATTCCGCCCCATTTGAGAGAAGCGTGGGCTCGTCA
AATGCGCGATCTGCTGGTCCCTGAAACTGGAGTGCTCATGACTCTCATCT
ATCCCATTTGCGAAAAAGATGGAGGTCCACCGTATCGTATGAGCCTGGAG
ATCATTCGAGGTTTATTGGAGCCCATGGGCTTTGTCGCGGAGACTCTCTG
CTTACTCCCACAGGAGTTATGCCATCCGGGCCGGGATGGAACTTCGGGGC
AATGGAAAGCAACGTCTGGAGTAGGTTTATGGCGGCTACAGAAATGA

protein sequence of rna2167

>rna2167-protein ID=rna2167-protein|Name=rna2167|organism=Nannochloropsis gaditana|type=polypeptide|length=617bp
MLTLPSQTSRYFPKTTSTGKRLSYRITKPVRSARHLEQLHMLRAIFPRAL
LISPLTASVRLSRQVLVASLSSASSRPGQGQLPPSSSRWLTAKQATTVLT
AVTALSAAAAAVAWCETEEINDERAMPVTGAVEGVPIKADLTNQEYKLAR
QNTTRKVKNHYQYVIMGAGTTAYAAIETIFNRQPQADILLISNEAALPQP
DVFRHHALSAPLLHSYNEWRRHTTSKLESEPDAISSAPITLLLNNEKSLQ
LDVDKQRILLQDGSYITYDRCLIATAGKDRGLWAVDRRKISYSLRDRINT
CSTIYDFEQLDSLHNIMANKHVSVVGGGFLGTELALALAVRGRETGMTVS
QIYAEKGPLCRYIPNYLGMHVQRLLHGAGVRYVNERLVTDVKDGGDDAPG
ALRISLMGWNKENIYTDYAVLAPTHVEPCVDVAVKSGLELDANTNGIAVN
QQLEAVGNVFVAGGVASYYDAALGRRRVEMFDHSINSGILAGKNMTADER
RPKRRYTHQPMYRSLLKDIDVVCDVVGEIDSKMHTVGIWVNNPVETEDET
ETYQRGIIYYMRENRIRGIMLWNASDYLERAREVLNAQTNIANVAMLKRQ
IALAPDAWLRVMETAAD

mRNA from alignment at CM002458.1:1056339..1058348-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2167 ID=rna2167|Name=rna2167|organism=Nannochloropsis gaditana|type=mRNA|length=2010bp|location=Sequence derived from alignment at CM002458.1:1056339..1058348- (Nannochloropsis gaditana)
ATGCTTACTCTGCCGTCCCAAACGTCAAGATACTTCCCAAAAACCACATC
AACAGGGAAGCGACTGTCATATCGCATCACTAAGCCCGTTCGATCTGCCC
GCCACCTGGAGCAGCTGCATATGCTACGAGCTATTTTCCCCCGTGCACTC
CTAATATCGCCTCTCACGGCGTCGGTCCGTCTATCCCGCCAAGTCCTTGT
TGCATCTCTCTCCTCCGCCTCTTCAAGACCAGGGCAAGGACAACTTCCGC
CGTCTTCTTCCCGTTGGTTGACAGCGAAGCAAGCAACAACAGTCTTGACT
GCAGTTACCGCACTCTCTGCAGCAGCAGCGGCAGTTGCATGGTGTGAGAC
TGAGGAGATAAACGATGAGCGGGCGATGCCCGTGACAGGAGCGGTGGAGG
GAGTGCCAATCAAGGCCGACCTTACGAATCAAGAATACAAGCTTGCGCGG
CAGAATACAACCAGAAAGGTCAAAAATCATTATCAGTATGTAATCATGGG
CGCAGGTACTACGGCCTATGCAGCCATCGAGACCATTTTCAACCGGCAGC
CACAAGCCGACATATTGCTCATCTCTAACGAGGCTGCTTTACCCCAGCCA
GACGTTTTCAGGCACCACGCCTTGTCCGCACCGCTGTTGCATTCCTACAA
TGAATGGCGCCGCCATACTACTTCGAAGCTCGAGTCCGAGCCCGATGCAA
TTTCTTCGGCGCCCATCACGCTGCTTCTAAACAACGAGAAATCCTTGCAG
CTCGATGTCGATAAGCAGCGCATCCTGCTTCAAGATGGCTCTTACATTAC
CTACGACCGTTGCCTAATTGCCACGGCAGGGAAAGATCGGGGTTTGTGGG
CTGTGGACCGGCGGAAGATCTCCTATTCCCTACGCGACCGCATTAACACC
TGCAGCACCATATACGATTTTGAGCAGCTGGACAGCCTGCACAACATCAT
GGCGAACAAGCACGTGTCTGTCGTGGGCGGGGGATTTCTGGGGACCGAGC
TGGCTTTGGCCCTGGCAGTGCGGGGACGCGAGACGGGCATGACTGTCTCG
CAGATCTACGCGGAGAAAGGTCCGCTGTGTCGGTATATCCCCAACTACTT
GGGGATGCACGTCCAGCGGCTGTTGCACGGTGCCGGCGTGCGCTACGTGA
ACGAGCGTTTGGTCACGGACGTCAAAGACGGGGGGGACGACGCCCCGGGG
GCCCTGCGGATCTCCTTGATGGGATGGAACAAGGAGAACATTTACACCGA
TTACGCCGTCCTGGCGCCCACCCACGTCGAGCCCTGCGTGGACGTGGCGG
TGAAGAGTGGGTTAGAACTCGATGCCAACACGAACGGCATTGCCGTGAAT
CAGCAGCTGGAGGCCGTGGGGAACGTGTTTGTGGCGGGCGGGGTAGCCAG
TTACTACGACGCTGCCTTGGGGAGGCGGAGGGTGGAGATGTTTGACCATT
CCATCAACAGTGGGATCCTGGCGGGGAAGAACATGACAGCGGACGAGCGG
AGACCAAAGCGACGATATACGCACCAGCCTATGTACCGGTCCCTCTTGAA
AGATATCGACGTGGTCTGCGACGTGGTGGGGGAGATTGACAGCAAGATGC
ACACGGTGGGCATCTGGGTGAACAACCCCGTTGAAACCGAGGACGAGACG
GAAACCTACCAGCGCGGGATCATTTACTACATGCGGGAAAACAGGTAAGA
GATTAAGCACGCGGGATGAGTGCTCTATTTACCCTCGGGGTTGGCGCGCC
GCTCGTCAAACTTGCCTCTCTCGCTCCTCTTCTCTTTCTCTCTTTGGTCT
TCCCCGCCCTTGTCCATGGATCTTCTTCAACCCCTCATCGCAATCGACAG
GATCCGAGGCATCATGCTATGGAACGCCAGCGACTATTTGGAACGGGCCC
GGGAAGTTCTCAACGCACAGACCAACATCGCGAACGTGGCCATGCTAAAA
AGGCAGATTGCCTTGGCGCCGGACGCCTGGCTCAGAGTCATGGAGACCGC
GGCGGATTAG

Coding sequence (CDS) from alignment at CM002458.1:1056339..1058348-

>rna2167 ID=rna2167|Name=rna2167|organism=Nannochloropsis gaditana|type=CDS|length=3708bp|location=Sequence derived from alignment at CM002458.1:1056339..1058348- (Nannochloropsis gaditana)
GATCCGAGGCATCATGCTATGGAACGCCAGCGACTATTTGGAACGGGCCC
GGGAAGTTCTCAACGCACAGACCAACATCGCGAACGTGGCCATGCTAAAA
AGGCAGATTGCCTTGGCGCCGGACGCCTGGCTCAGAGTCATGGAGACCGC
GGCGGATTAGATGCTTACTCTGCCGTCCCAAACGTCAAGATACTTCCCAA
AAACCACATCAACAGGGAAGCGACTGTCATATCGCATCACTAAGCCCGTT
CGATCTGCCCGCCACCTGGAGCAGCTGCATATGCTACGAGCTATTTTCCC
CCGTGCACTCCTAATATCGCCTCTCACGGCGTCGGTCCGTCTATCCCGCC
AAGTCCTTGTTGCATCTCTCTCCTCCGCCTCTTCAAGACCAGGGCAAGGA
CAACTTCCGCCGTCTTCTTCCCGTTGGTTGACAGCGAAGCAAGCAACAAC
AGTCTTGACTGCAGTTACCGCACTCTCTGCAGCAGCAGCGGCAGTTGCAT
GGTGTGAGACTGAGGAGATAAACGATGAGCGGGCGATGCCCGTGACAGGA
GCGGTGGAGGGAGTGCCAATCAAGGCCGACCTTACGAATCAAGAATACAA
GCTTGCGCGGCAGAATACAACCAGAAAGGTCAAAAATCATTATCAGTATG
TAATCATGGGCGCAGGTACTACGGCCTATGCAGCCATCGAGACCATTTTC
AACCGGCAGCCACAAGCCGACATATTGCTCATCTCTAACGAGGCTGCTTT
ACCCCAGCCAGACGTTTTCAGGCACCACGCCTTGTCCGCACCGCTGTTGC
ATTCCTACAATGAATGGCGCCGCCATACTACTTCGAAGCTCGAGTCCGAG
CCCGATGCAATTTCTTCGGCGCCCATCACGCTGCTTCTAAACAACGAGAA
ATCCTTGCAGCTCGATGTCGATAAGCAGCGCATCCTGCTTCAAGATGGCT
CTTACATTACCTACGACCGTTGCCTAATTGCCACGGCAGGGAAAGATCGG
GGTTTGTGGGCTGTGGACCGGCGGAAGATCTCCTATTCCCTACGCGACCG
CATTAACACCTGCAGCACCATATACGATTTTGAGCAGCTGGACAGCCTGC
ACAACATCATGGCGAACAAGCACGTGTCTGTCGTGGGCGGGGGATTTCTG
GGGACCGAGCTGGCTTTGGCCCTGGCAGTGCGGGGACGCGAGACGGGCAT
GACTGTCTCGCAGATCTACGCGGAGAAAGGTCCGCTGTGTCGGTATATCC
CCAACTACTTGGGGATGCACGTCCAGCGGCTGTTGCACGGTGCCGGCGTG
CGCTACGTGAACGAGCGTTTGGTCACGGACGTCAAAGACGGGGGGGACGA
CGCCCCGGGGGCCCTGCGGATCTCCTTGATGGGATGGAACAAGGAGAACA
TTTACACCGATTACGCCGTCCTGGCGCCCACCCACGTCGAGCCCTGCGTG
GACGTGGCGGTGAAGAGTGGGTTAGAACTCGATGCCAACACGAACGGCAT
TGCCGTGAATCAGCAGCTGGAGGCCGTGGGGAACGTGTTTGTGGCGGGCG
GGGTAGCCAGTTACTACGACGCTGCCTTGGGGAGGCGGAGGGTGGAGATG
TTTGACCATTCCATCAACAGTGGGATCCTGGCGGGGAAGAACATGACAGC
GGACGAGCGGAGACCAAAGCGACGATATACGCACCAGCCTATGTACCGGT
CCCTCTTGAAAGATATCGACGTGGTCTGCGACGTGGTGGGGGAGATTGAC
AGCAAGATGCACACGGTGGGCATCTGGGTGAACAACCCCGTTGAAACCGA
GGACGAGACGGAAACCTACCAGCGCGGGATCATTTACTACATGCGGGAAA
ACAGGATCCGAGGCATCATGCTATGGAACGCCAGCGACTATTTGGAACGG
GCCCGGGAAGTTCTCAACGCACAGACCAACATCGCGAACGTGGCCATGCT
AAAAAGGCAGATTGCCTTGGCGCCGGACGCCTGGCTCAGAGTCATGGAGA
CCGCGGCGGATTAGATGCTTACTCTGCCGTCCCAAACGTCAAGATACTTC
CCAAAAACCACATCAACAGGGAAGCGACTGTCATATCGCATCACTAAGCC
CGTTCGATCTGCCCGCCACCTGGAGCAGCTGCATATGCTACGAGCTATTT
TCCCCCGTGCACTCCTAATATCGCCTCTCACGGCGTCGGTCCGTCTATCC
CGCCAAGTCCTTGTTGCATCTCTCTCCTCCGCCTCTTCAAGACCAGGGCA
AGGACAACTTCCGCCGTCTTCTTCCCGTTGGTTGACAGCGAAGCAAGCAA
CAACAGTCTTGACTGCAGTTACCGCACTCTCTGCAGCAGCAGCGGCAGTT
GCATGGTGTGAGACTGAGGAGATAAACGATGAGCGGGCGATGCCCGTGAC
AGGAGCGGTGGAGGGAGTGCCAATCAAGGCCGACCTTACGAATCAAGAAT
ACAAGCTTGCGCGGCAGAATACAACCAGAAAGGTCAAAAATCATTATCAG
TATGTAATCATGGGCGCAGGTACTACGGCCTATGCAGCCATCGAGACCAT
TTTCAACCGGCAGCCACAAGCCGACATATTGCTCATCTCTAACGAGGCTG
CTTTACCCCAGCCAGACGTTTTCAGGCACCACGCCTTGTCCGCACCGCTG
TTGCATTCCTACAATGAATGGCGCCGCCATACTACTTCGAAGCTCGAGTC
CGAGCCCGATGCAATTTCTTCGGCGCCCATCACGCTGCTTCTAAACAACG
AGAAATCCTTGCAGCTCGATGTCGATAAGCAGCGCATCCTGCTTCAAGAT
GGCTCTTACATTACCTACGACCGTTGCCTAATTGCCACGGCAGGGAAAGA
TCGGGGTTTGTGGGCTGTGGACCGGCGGAAGATCTCCTATTCCCTACGCG
ACCGCATTAACACCTGCAGCACCATATACGATTTTGAGCAGCTGGACAGC
CTGCACAACATCATGGCGAACAAGCACGTGTCTGTCGTGGGCGGGGGATT
TCTGGGGACCGAGCTGGCTTTGGCCCTGGCAGTGCGGGGACGCGAGACGG
GCATGACTGTCTCGCAGATCTACGCGGAGAAAGGTCCGCTGTGTCGGTAT
ATCCCCAACTACTTGGGGATGCACGTCCAGCGGCTGTTGCACGGTGCCGG
CGTGCGCTACGTGAACGAGCGTTTGGTCACGGACGTCAAAGACGGGGGGG
ACGACGCCCCGGGGGCCCTGCGGATCTCCTTGATGGGATGGAACAAGGAG
AACATTTACACCGATTACGCCGTCCTGGCGCCCACCCACGTCGAGCCCTG
CGTGGACGTGGCGGTGAAGAGTGGGTTAGAACTCGATGCCAACACGAACG
GCATTGCCGTGAATCAGCAGCTGGAGGCCGTGGGGAACGTGTTTGTGGCG
GGCGGGGTAGCCAGTTACTACGACGCTGCCTTGGGGAGGCGGAGGGTGGA
GATGTTTGACCATTCCATCAACAGTGGGATCCTGGCGGGGAAGAACATGA
CAGCGGACGAGCGGAGACCAAAGCGACGATATACGCACCAGCCTATGTAC
CGGTCCCTCTTGAAAGATATCGACGTGGTCTGCGACGTGGTGGGGGAGAT
TGACAGCAAGATGCACACGGTGGGCATCTGGGTGAACAACCCCGTTGAAA
CCGAGGACGAGACGGAAACCTACCAGCGCGGGATCATTTACTACATGCGG
GAAAACAG

Synonyms

Publications