rna2161, rna2161 (mRNA) Nannochloropsis gaditana

Overview
Namerna2161
Unique Namerna2161
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1359
Alignment locationCM002458.1:1030405..1032185 +

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Properties
Property NameValue
Productlipocalin protein
Orig transcript idgnl|cribi|Naga_100131g14.7457.mrna
Orig protein idgnl|cribi|Naga_100131g14.7457
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1030405..1032185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100131g14gene2064Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2161rna2161-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28512.1cds2153Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2161 ID=rna2161|Name=rna2161|organism=Nannochloropsis gaditana|type=mRNA|length=1359bp
ATGTCGCGACGCATTGGACAGCCTGTAAACCAAGTGCGGTTGACAAATGT
AGCTATGGTACGGATACATAAGGGTGGGAAGCGTTTTGAAATTGCATGTT
ACCGCAATAAGGTCTTGAGCTGGCGGCAAGGGGTGGAGAAGGACATCGAC
GAGGTGCTTCAAACCCACGCCATTTTCCTGAACGTGAGTAAAGGTGTTCT
GGCCAGCAGCAAGGACTTGATGGATTGTTTCGGTCAAGAGGATGTAGAGG
CCTTGTTGCGGCTTATTTTAGAAAAGGGCGAGTATCATCCTTCAGATAAG
GAGAGGGAGGCCATGCATGAAAGCTTATACCGAGATATCGCCACCATAGT
GGCATTAAAAAGCGTGAATCCTACTTCAAATCGCCCTTACACGGTTAACA
TGATATTGAGTGGCATGAAAGACATCCACTTCGCAGTGAACCCGACGCGA
GGGGCCAAGCAACAAGCCTTAGAGGTAATTCGGAGGCTGCAAGATGTCAT
GCCCTTGGAGCGGGCTAAAATGCGCCTGAAAGTGGTCTGTCCGACGACGG
AAGACCTCGCACAGGTAATCAAGGGTATGGCTTCTTTCGGAATTGATGGA
AATACGGTGGAAGCAACGGGCAAGAAAGAAGAAGTAGACCTATTGGTGGA
TCCGGGATTGTTTCGGAGAGTGGATGAGTTGGTACGAGGAAAGGGCAAGG
GTGCCTTGCATGTTCTGGAACTTAATGTGCAGCAGGAAGGAGAGGCAGAC
GTCGATCTAGAAATTGCGCGAAAGGCGGCCATGCGGAAAGAACAGAGAGA
TGAGTCCGCGGTAGCCAACACATGTAAGGCGTTCGAAGAAGCGCAAGAAA
GGGAAGGGAGAAAGGAAACGGACCAGGAGGGGGAGGCAGGGTTCCTGAGG
GGGGCGAATGTCAAAGCTCATGGTGATGAAGACAGTGTCGTTGAAGGGGC
AGAGGAACATGTGGACAAACAGGGTAGGGTAAGCAGAGGCAGCAAGAAAT
CCAAGGCGGCCAGGCGACGGGAGAAAGAAATCTTCCGGGAACGGGAATTG
CGAAAAGAAGAAGAATGCAAACGTAGGGAACGACAGGGAGAGGAACGTCC
GAAATCGGAGGAAAGCAACAAGAAGGGCGGGGGATCAGAAAGGGGTTCAT
GGGAAAAAGCGAGGCCCGGGTCGAACCGATTGGCGTGTAACACCTGCCGC
GTGGATTTTCAGGATGCCAAGGAATACCGGGAGCACTACCGCACAGACTG
GCACCGCTACAATTTGAAACTGAAAGAGAAAGGCGGAGGGCCCGTGTCGG
AGGCAGAATTTGAGCTTGTAGATGCGGATGAGATGTTTTGTAGTTATCGC
GACATTTGA
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protein sequence of rna2161

>rna2161-protein ID=rna2161-protein|Name=rna2161|organism=Nannochloropsis gaditana|type=polypeptide|length=263bp
MRCNYKACGLGLLAAVLLTGFPASEAVETLHELSGFRQTPSWPGPIPAVS
EIDIEAYTGRWFQVYTNFLVQYTFELGGVCVTADYGLLPNGTGISVHNAQ
NFLEPNGTTTIINGNAMAMNASEPGKLTVNFDAIPFPGSYWIIKLGPIED
GVYQYSVVTDAYAITLFILARDPGTFADLYEEEVKEFVDPLFSGFLRKPR
LTVQGAECLYSPEPSPSNLTVEGAEGKGNTHDEAALASEDEDEMAASVAR
LRKDVRSGRPQKH
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mRNA from alignment at CM002458.1:1030405..1032185+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2161 ID=rna2161|Name=rna2161|organism=Nannochloropsis gaditana|type=mRNA|length=1781bp|location=Sequence derived from alignment at CM002458.1:1030405..1032185+ (Nannochloropsis gaditana)
CCAAGAGACCCAACCCTTCTTCGTGCAGGGGAATGTCGTCTGTAGTATTT
CGTTATTTTCGTGAAAACGATATTTGTGCGGGGGGTCGAGCTGGTGGGTT
GAGGACTACATGCTTGGCACCGGAGGCTggttttctttcttcccccttat
GAATTCGCCTCGCGAACCAGAAGCGGCGAATTGCTCATCGCGGAGAACAT
GACATTTAAATCAGAATGTGCCTTGCATCCTTCACCACGTATCGCTATAT
CTTGCATCTGAAGTGCTTCTACGCAGCGGTCATGATGAAATTCTTGAGAC
ATTTTGGTGTGTTTTGAGTCCTGTCTTGAAGCCCGCACGGAGTGGCTCAT
AAGGCGAGGAACAAATGTGATGCCACTCCCACCTCGAACCATTTTTTCCT
ATGTCCACCCTACGCAGCCACACATTTGAACAGAAGCAATAATGCGCTGC
AACTACAAAGCCTGTGGTTTGGGTCTATTGGCTGCGGTTCTCCTGACAGG
CTTCCCTGCCTCTGAGGCTGTGGAGACGCTGCATGAGTTATCGGGGTTCC
GCCAGACGCCGAGTTGGCCCGGTCCCATCCCTGCTGTGTCTGAAATAGAT
ATCGAGGCGTACACAGGTCGATGGTTCCAGGTAAGCTGACGGGAGCATAG
ATTAGATGTGGACACGTTGAAGTTGCGGCCACGCCCTCGATCGACCCGGT
GTGCACATTGCCTTGCCCGCGGTTTGCTCGTGTTGGCTGTCGCGCATTCC
GTCGTCGCGAATCCGCATACGCCACGGTATTTCTCATCTATGAGTTGTTT
GTACCTTTCCGCCCTTTTGTAAGGTCTACACAAATTTCTTGGTTCAATAT
ACTTTTGAACTGGGAGGTGTATGCGTCACGGCCGACTACGGCCTTTTGCC
CAACGGCACGGGCATCTCCGTCCACAATGCTCAGAACTTCTTGGAACCGA
ATGGCACCACCACGATCATCAACGGCAATGCCATGGCCATGAATGCCTCG
GAGCCGGGTAAGCTGACGGTGAATTTTGATGCAATTCCGTTCCCTGGCAG
CTACTGGATCATCAAATTGGGCCCCATTGAGGACGGTGTCTACCAGTACA
GCGTTGTCACGGATGCCTATGCCATCACCCTCTTCATACTGGCGCGCGAC
CCAGGGACGTTTGCGGACCtgtacgaggaggaagtgaaggaaTTTGTGGA
TCCGCTTTTCTCGGGATTTTTGCGCAAGCCACGACTGACCGTGCAAGGCG
CAGAATGCTTGTACTCTCCCGAGCCGTCTCCTTCCAATTTGACGGTGGAA
ggtgcggaggggaagggaaacaCACACGACGAGGCTGCGTTGGCCtccga
ggatgaggatgaaaTGGCCGCGAGTGTGGCTCGCCTCCGCAAAGATGTGC
GAAGCGGAAGGCCTCAGAAACACTGATTTGTGGAAAAAAAGACTACCCTT
TGTTTAACACATGCAGGGCGGGTATTGAATGTGAACTTGAAAGGGTTGAA
GGGTGTGATGCTTGATCATGAACCATTTGTGAGAAAAAACGAGAACAACG
AAAGTATGACAGGGCCGTGGCCATGACCGGGTGAAATATTTTTTCGAAGG
GTTATCAAAAACTTCGATGGGGGGGATTGCGGTAAGAATAGCATGAGGCT
CGGGGTAAGGAGAAAGCATGTGTCGTCCGTGTAATGCCTCATGGGATCTT
CTGACTTTGATGAGTAGAATCTTTATAGTCAACGTGCTATGACGGAAAGA
AAAATTAACCGAAATATGGAGGTGCCATAAA
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Coding sequence (CDS) from alignment at CM002458.1:1030405..1032185+

>rna2161 ID=rna2161|Name=rna2161|organism=Nannochloropsis gaditana|type=CDS|length=1584bp|location=Sequence derived from alignment at CM002458.1:1030405..1032185+ (Nannochloropsis gaditana)
ATGCGCTGCAACTACAAAGCCTGTGGTTTGGGTCTATTGGCTGCGGTTCT
CCTGACAGGCTTCCCTGCCTCTGAGGCTGTGGAGACGCTGCATGAGTTAT
CGGGGTTCCGCCAGACGCCGAGTTGGCCCGGTCCCATCCCTGCTGTGTCT
GAAATAGATATCGAGGCGTACACAGGTCGATGGTTCCAGGTCTACACAAA
TTTCTTGGTTCAATATACTTTTGAACTGGGAGGTGTATGCGTCACGGCCG
ACTACGGCCTTTTGCCCAACGGCACGGGCATCTCCGTCCACAATGCTCAG
AACTTCTTGGAACCGAATGGCACCACCACGATCATCAACGGCAATGCCAT
GGCCATGAATGCCTCGGAGCCGGGTAAGCTGACGGTGAATTTTGATGCAA
TTCCGTTCCCTGGCAGCTACTGGATCATCAAATTGGGCCCCATTGAGGAC
GGTGTCTACCAGTACAGCGTTGTCACGGATGCCTATGCCATCACCCTCTT
CATACTGGCGCGCGACCCAGGGACGTTTGCGGACCtgtacgaggaggaag
tgaaggaaTTTGTGGATCCGCTTTTCTCGGGATTTTTGCGCAAGCCACGA
CTGACCGTGCAAGGCGCAGAATGCTTGTACTCTCCCGAGCCGTCTCCTTC
CAATTTGACGGTGGAAggtgcggaggggaagggaaacaCACACGACGAGG
CTGCGTTGGCCtccgaggatgaggatgaaaTGGCCGCGAGTGTGGCTCGC
CTCCGCAAAGATGTGCGAAGCGGAAGGCCTCAGAAACACTGAATGCGCTG
CAACTACAAAGCCTGTGGTTTGGGTCTATTGGCTGCGGTTCTCCTGACAG
GCTTCCCTGCCTCTGAGGCTGTGGAGACGCTGCATGAGTTATCGGGGTTC
CGCCAGACGCCGAGTTGGCCCGGTCCCATCCCTGCTGTGTCTGAAATAGA
TATCGAGGCGTACACAGGTCGATGGTTCCAGGTCTACACAAATTTCTTGG
TTCAATATACTTTTGAACTGGGAGGTGTATGCGTCACGGCCGACTACGGC
CTTTTGCCCAACGGCACGGGCATCTCCGTCCACAATGCTCAGAACTTCTT
GGAACCGAATGGCACCACCACGATCATCAACGGCAATGCCATGGCCATGA
ATGCCTCGGAGCCGGGTAAGCTGACGGTGAATTTTGATGCAATTCCGTTC
CCTGGCAGCTACTGGATCATCAAATTGGGCCCCATTGAGGACGGTGTCTA
CCAGTACAGCGTTGTCACGGATGCCTATGCCATCACCCTCTTCATACTGG
CGCGCGACCCAGGGACGTTTGCGGACCtgtacgaggaggaagtgaaggaa
TTTGTGGATCCGCTTTTCTCGGGATTTTTGCGCAAGCCACGACTGACCGT
GCAAGGCGCAGAATGCTTGTACTCTCCCGAGCCGTCTCCTTCCAATTTGA
CGGTGGAAggtgcggaggggaagggaaacaCACACGACGAGGCTGCGTTG
GCCtccgaggatgaggatgaaaTGGCCGCGAGTGTGGCTCGCCTCCGCAA
AGATGTGCGAAGCGGAAGGCCTCAGAAACACTGA
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Synonyms
Publications