rna2159, rna2159 (mRNA) Nannochloropsis gaditana

Overview
Namerna2159
Unique Namerna2159
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1647
Alignment locationCM002458.1:1025562..1026958 -

Link to JBrowse

Properties
Property NameValue
Productxpa-binding protein 1
Orig transcript idgnl|cribi|Naga_100131g16.7466.mrna
Orig protein idgnl|cribi|Naga_100131g16.7466
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1025562..1026958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100131g16gene2062Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28521.1cds2151Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2159rna2159-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2159 ID=rna2159|Name=rna2159|organism=Nannochloropsis gaditana|type=mRNA|length=1647bp
TGTTGAATATTTGCACGGCTGGCGTGAGTTCTGCCCATGGCATTGAGCAG
TGCAGATGAAGAGTCCTCCTACGGTAATACTTCCAGCGACGACGACGATG
AAAAGCTTGATAGCGCTCGGTTTATTCCTACCTCCCGTAAACTTTCCCCA
TCGCGCGTGGCTCCTAGAGGCACAAGCCTACAAAAGGACGTCATTGACTC
GGACGAAGCTACCTCTGTGCAAATGGAAGTACTTGACTCGGATGAAGCGA
CAGGAAAAGAAGAGGATAGAGGGGCAGCGCATAGAGGAAAGGCGAATGGT
ATTGAGAAAGGAGACAGCGTACGTCGGTCGCTTAAGAGAAAGATAGCACA
GGAAAGGGAGGATGGAAGCCTGGAAGATCAACGGATAGAGTTGACCCGGA
GGCTGGGGAAAGTGCTGCAGAAATTAATCGAAAGTGGACCTCACATTTTG
TACGCCACGCAACTGGAGGAAGCCTTCACGATGCATGTGGAGCGAGAGCG
CTTGGCACGGAGCCAGCGAGACGCAACTGTGGCGTCGCAGCAGGATCATT
CGGAGGGCCCAGGCAGAAGGAGTGAGGGAACGAGAAGTGCCGCCTCGTCA
GTAGTAACTGTAGGTCTGCCCACTTTGTATTCGGACCTATCCAGCATCCT
CCTGGACCGTCTTAGGCACGGCCCGAGGAAGAAATTGCGGCGTTTGCTCC
AAGAAGCTATCAAAAGTCAGGCCTGGGAGGTGGTGGCTCGGAAGTATTCG
AGGAAAAGGCAAGCGAAAGAGGGCCGCGAGGCGGGACGGGAGAGCAGCAT
GGGGAAGCCAGAGGGAAAGGAGGGCGTAAGAGGGGTACTCGGGAATGACA
GGGTCCCGCAGCGGGAGAAGGGAAGGCGAGATGGAGATGGGAGGAATGGG
GGAAGGGAAGGTGGGGGAGCGAAGTCATCCTCGAGCGCCGCGGGCAAGAA
GAGGAGCAGGGCGGTAGGCGACATGCCCGGGGAGAAGGTGGGCGGGGGAA
ATGGAGGAGAGGCTGAGGGGAGGGAGGATGCGAGGAGGAGAGCGGCGGGA
ACAGTGAAGCGGAGGAAGGAACAGTTGAAAGCACCGGGCAAGGGAGGGAA
GGAGGTGGGGAAGGAAGGAGGGACACGGGTAGCGAAGGGGAAGAGCGCAT
TGGACAGCAGAGCGGAGAGCATAATGCCCTTGGGTGGCTCCCACCGGGCG
CCTGGCAAGCCCGTGGAGGGGAAGAGGACGACCGTGCCGGGGCCCAGCGA
CCTCGAGAAGGGGCGGGGGGGCATGCCGAGCTCGGTGGGGTCGGGGGAGG
GGGGAGAAGGGCGAAGGCAGGTGTTACCAAAAGCGCCTCCAGAGAGCCGT
GGACGTCATCCCTCAGCCCTCCCCCTCCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCAACCTTCACCCCGGGGGGCGCATCGGGGTCAGGGAGCCT
CCCTCCCCCGTCCTGCGCTTCTCACCGGCGTCAGGAAACCGCACGGGAAC
GTCAAGATGCACTCAAGGCGCACCAACAGGCGGAGAGGGAGCGTCGGCAC
CAGCAGTTGGAGTTGCGGCGGGCGGTGGAGCGGCGTAAGCACGAGAACTT
ACAACGCACACTCACCTTCGACGATACGCTGGAAAGCCTCTGGAGTC
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protein sequence of rna2159

>rna2159-protein ID=rna2159-protein|Name=rna2159|organism=Nannochloropsis gaditana|type=polypeptide|length=385bp
MRGGNCISSFISQHFTSSLAAPIIPSKDTTGMQSGSSGVRPNESPPSCTD
EPPTSPPPFRKKPIVLLFMGMAGSGKTTLVQRLNLELNSQGTKSYYVNLD
PAVKSVPFAANIDIRDTVNYKEVMKQYELGPNGAIMTSLNLFATRFDQVL
SILEKRAPDLEYVLVDTPGQIEVFTWSASGAIITEALASSFPTLLVYVVD
TPRTSSPTTFMSNMLYACSILYKTRLPIVLTFNKTDILSHTFAVDWMEDF
EKFQEGLDRQGEDMGYMSTLIRSMSLVLDEFYKTLRKVGVSAASGDGIDV
FFRAVDEAAEEFARDYLPDMLARKAESVREEDGRRGKEMARLMKDLRMEG
ERGEGGGGEGEGGEGEGGKQVEGKKKRKDDEREEK
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mRNA from alignment at CM002458.1:1025562..1026958-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2159 ID=rna2159|Name=rna2159|organism=Nannochloropsis gaditana|type=mRNA|length=1397bp|location=Sequence derived from alignment at CM002458.1:1025562..1026958- (Nannochloropsis gaditana)
CTACTAGCCCGCTCAGATAGAATAGAAGGCCATCAAGGTTAAGCCTTTTT
ATATCAATTTGTAGAATTCCCGACTTTCGGTCCGCCTTTTCCGCTTGATC
CTTCATAAACATTATTTTATCGGTCAGTCTACGCTCTCTAGGATACTCGC
TAGAGCTCTCCGTATGAGAGGCGGCAACTGCATTTCCTCTTTTATCTCAC
AGCACTTCACTTCCTCACTCGCAGCTCCAATTATCCCTTCAAAAGACACG
ACAGGTATGCAGAGCGGAAGCAGCGGTGTCAGACCTAATGAGTCTCCACC
ATCATGTACGGACGAACCACCAACCTCCCCACCCCCCTTCCGAAAGAAGC
CTATCGTTCTCTTATTCATGGGTATGGCAGGAAGCGGCAAAACTACGCTT
GTGCAGCGTCTCAATCTAGAGCTTAACAGTCAGGGTACGAAAAGCTATTA
CGTGAACCTTGACCCGGCCGTAAAGTCTGTGCCATTCGCCGCAAACATCG
ACATCCGCGACACTGTGAACTACAAAGAAGTCATGAAGCAGTATGAATTA
GGACCTAATGGCGCCATTATGACCAGTCTTAATCTCTTTGCAACACGATT
CGATCAAGTCTTGAGCATTTTGGAGAAACGCGCCCCTGACCTTGAGTACG
TACTGGTTGATACACCTGGACAGATCGAGGTTTTCACATGGTCCGCCTCG
GGGGCCATTATAACGGAGGCACTCGCCTCCTCATTCCCCACGCTTCTCGT
CTACGTAGTGGACACACCTCGCACATCGTCACCGACTACATTCATGAGCA
ACATGCTCTACGCGTGCTCGATTCTGTACAAGACGCGCCTTCCTATCGTC
CTGACATTCAATAAGACCGACATCCTCTCCCACACCTTTGCTGTTGACTG
GATGGAGGACTTTGAAAAATTCCAAGAGGGACTGGATCGTCAGGGGGAGG
ACATGGGGTATATGTCCACTCTCATTCGGTCGATGAGCCTCGTGTTGGAC
GAATTTTACAAGACTCTCAGGAAAGTGGGCGTATCCGCCGCTAGCGGAGA
TGGAATCGATGTGTTCTTCAGGGCTGTCGACGAGGCGGCGGAGGAATTTG
CGCGAGACTACCTCCCAGATATGCTGGCACGAAAAGCAGAGAGTGTAAGG
GAGGAAGACGGGAGACGGGGTAAGGAGATGGCGAGGCTGATGAAAGACTT
GCGTATGGAAGGGGAAAGGGGAGAAGGAGGAGGAGGAGAGGGAGAAGGAG
GGGAGGGAGAAGGGGGGAAGCAGGTAGAGGGGAAGAAGAAAAGAAAGGAT
GATGAGAGAGAAGAAAAGTAGGATCGGCAATTGTAGAACATAAAGGATTG
TCTCTCGTTTGGTTGTTATGGCGCCGATAAAAAAGGACACGTCGCCC
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Coding sequence (CDS) from alignment at CM002458.1:1025562..1026958-

>rna2159 ID=rna2159|Name=rna2159|organism=Nannochloropsis gaditana|type=CDS|length=1158bp|location=Sequence derived from alignment at CM002458.1:1025562..1026958- (Nannochloropsis gaditana)
ATGAGAGGCGGCAACTGCATTTCCTCTTTTATCTCACAGCACTTCACTTC
CTCACTCGCAGCTCCAATTATCCCTTCAAAAGACACGACAGGTATGCAGA
GCGGAAGCAGCGGTGTCAGACCTAATGAGTCTCCACCATCATGTACGGAC
GAACCACCAACCTCCCCACCCCCCTTCCGAAAGAAGCCTATCGTTCTCTT
ATTCATGGGTATGGCAGGAAGCGGCAAAACTACGCTTGTGCAGCGTCTCA
ATCTAGAGCTTAACAGTCAGGGTACGAAAAGCTATTACGTGAACCTTGAC
CCGGCCGTAAAGTCTGTGCCATTCGCCGCAAACATCGACATCCGCGACAC
TGTGAACTACAAAGAAGTCATGAAGCAGTATGAATTAGGACCTAATGGCG
CCATTATGACCAGTCTTAATCTCTTTGCAACACGATTCGATCAAGTCTTG
AGCATTTTGGAGAAACGCGCCCCTGACCTTGAGTACGTACTGGTTGATAC
ACCTGGACAGATCGAGGTTTTCACATGGTCCGCCTCGGGGGCCATTATAA
CGGAGGCACTCGCCTCCTCATTCCCCACGCTTCTCGTCTACGTAGTGGAC
ACACCTCGCACATCGTCACCGACTACATTCATGAGCAACATGCTCTACGC
GTGCTCGATTCTGTACAAGACGCGCCTTCCTATCGTCCTGACATTCAATA
AGACCGACATCCTCTCCCACACCTTTGCTGTTGACTGGATGGAGGACTTT
GAAAAATTCCAAGAGGGACTGGATCGTCAGGGGGAGGACATGGGGTATAT
GTCCACTCTCATTCGGTCGATGAGCCTCGTGTTGGACGAATTTTACAAGA
CTCTCAGGAAAGTGGGCGTATCCGCCGCTAGCGGAGATGGAATCGATGTG
TTCTTCAGGGCTGTCGACGAGGCGGCGGAGGAATTTGCGCGAGACTACCT
CCCAGATATGCTGGCACGAAAAGCAGAGAGTGTAAGGGAGGAAGACGGGA
GACGGGGTAAGGAGATGGCGAGGCTGATGAAAGACTTGCGTATGGAAGGG
GAAAGGGGAGAAGGAGGAGGAGGAGAGGGAGAAGGAGGGGAGGGAGAAGG
GGGGAAGCAGGTAGAGGGGAAGAAGAAAAGAAAGGATGATGAGAGAGAAG
AAAAGTAG
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Synonyms
Publications