rna2158, rna2158 (mRNA) Nannochloropsis gaditana

Overview
Namerna2158
Unique Namerna2158
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1406
Alignment locationCM002458.1:1023395..1025041 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100009g1.566.mrna
Orig protein idgnl|cribi|Naga_100009g1.566
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1023395..1025041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g1gene2061Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2158rna2158-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28523.1cds2150Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2158 ID=rna2158|Name=rna2158|organism=Nannochloropsis gaditana|type=mRNA|length=1406bp
AGGTCCTACACCTAAGCATAAAGTAATGGACGTGTTGTGAGGCGGATTAA
ATGCACATGAATGTCAGCTCTAAAGGGTGAAATGATGGGCGAGTAGGGCG
GATCAAGGGAAGGAGTAACATTGGAAACATCTGGCGAGCGATAAAAAGAC
TGGCTTTCGGGTGTTGGGGAAAGACGTCTCGAGGATGCACATTATCATGC
TAATTCTGCATGGGGCGTTACCTCAGACCACTTCTGGTGCATGGAGACCC
AAGACACAGTTATATTGGTCTGCAAAGCCTGAAAGACGCCAGGTCTGCGG
CCTTTTGCTGCTCGTTATGATGCCCGCACAGCGTTGGGCAGATATGATGG
TGCTCCTCTCCCGACCCAGTGGGCAACATAACTGATACATTTACATTCCA
TGGGGAGGAAGCGCAAAGCCCAGCCCGTGGTGCCGGTTGTAAAAAGCCGA
AAGAGGGCTCGTAAGATTGTGACGCAATTTCATAAAGTCAACGATGCCCT
GGCCATTCTTGAGGAGGACGCGAACCTAAATTTGGTGGATAAGGAGGCAC
ACCGCAGTCGGCTTCAAGAAAGTTTGGAGGCACTCGGGGGCCGGGCAGCC
TATCAATCTGCCTCCCAGCTCTCTGTCTCCTTTCACAGTACGAGCAAGTG
GGTCCTCGCCCGCCTACAAGCCATGGGAATCATCAGGATGCAGAGCGCCC
CATCCTTGTCGCCCTCTCAGCCCTCTCAGAAACCTCGGCTGCTGGAGGTT
GGGGCTATCACCACCACCCTCCTCGATTGTCCTGCTGTGCAAACTACCGC
CATCGATCTCCTCTCTCGCCACGCCCGAATTCAACAAATCGACTTCTTTC
ACCTGCCACAACCTCCGCTTTCCACATTCGATGTGATTGTCGCCTCCATG
CTGATCAATTCCCTTCCTACCGCTTCTGCCCGGGGCGACTTTCTCCGTCG
CTGCCACGCCTATCTAGAAGCGAGCAAAGGATATTTGTTCCTCATCTTGC
CCTCCTCTTGCCTGACCCACTCCAAATACATGACTGTGGGAAAATTCCGC
TCACTGGTCACGACACGGGTAGGATTCGCGGTCGTGGAGGAAAAGTGGAC
GCCGAAAACGGTTGCTTTTGTGCTGCGCGCGTCTGGAAAATGCGATGAGG
GAAGACTAACGGCGGGGAGGGAAAAAGTGACGTCTTCGTCCTGGGCAAAA
AAGTTTGACATACTTTTGTGAATCGTCGGGGGCAAAAAGATTGGAAGTCA
GTCGGGTGTGTAGGCGGAGACATTGTTTGGGGTCGAGAAGTGAGGGAGGG
ATATGTTCTTCGACGGATAATTTGAAAGCGTGTGGCTTGTTACTATCAAT
GTACAGCTCCTCATAATTAATAATTGGAAAGAAAGAATTGAATTCGGCAA
AAATGT
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protein sequence of rna2158

>rna2158-protein ID=rna2158-protein|Name=rna2158|organism=Nannochloropsis gaditana|type=polypeptide|length=537bp
MALSSADEESSYGNTSSDDDDEKLDSARFIPTSRKLSPSRVAPRGTSLQK
DVIDSDEATSVQMEVLDSDEATGKEEDRGAAHRGKANGIEKGDSVRRSLK
RKIAQEREDGSLEDQRIELTRRLGKVLQKLIESGPHILYATQLEEAFTMH
VERERLARSQRDATVASQQDHSEGPGRRSEGTRSAASSVVTVGLPTLYSD
LSSILLDRLRHGPRKKLRRLLQEAIKSQAWEVVARKYSRKRQAKEGREAG
RESSMGKPEGKEGVRGVLGNDRVPQREKGRRDGDGRNGGREGGGAKSSSS
AAGKKRSRAVGDMPGEKVGGGNGGEAEGREDARRRAAGTVKRRKEQLKAP
GKGGKEVGKEGGTRVAKGKSALDSRAESIMPLGGSHRAPGKPVEGKRTTV
PGPSDLEKGRGGMPSSVGSGEGGEGRRQVLPKAPPESRGRHPSALPLPPP
PPPPPPPPQPSPRGAHRGQGASLPRPALLTGVRKPHGNVKMHSRRTNRRR
GSVGTSSWSCGGRWSGVSTRTYNAHSPSTIRWKASGV
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mRNA from alignment at CM002458.1:1023395..1025041+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2158 ID=rna2158|Name=rna2158|organism=Nannochloropsis gaditana|type=mRNA|length=1647bp|location=Sequence derived from alignment at CM002458.1:1023395..1025041+ (Nannochloropsis gaditana)
TGTTGAATATTTGCACGGCTGGCGTGAGTTCTGCCCATGGCATTGAGCAG
TGCAGATGAAGAGTCCTCCTACGGTAATACTTCcagcgacgacgacgatg
aaaAGCTTGATAGCGCTCGGTTTATTCCTACCTCCCGTAAACTTTCCCCA
TCGCGCGTGGCTCCTAGAGGCACAAGCCTACAAAAGGACGTCATTGACTC
GGACGAAGCTACCTCTGTGCAAATGGAAGTACTTGACTCGGATGAAGcga
caggaaaagaagaggataGAGGGGCAGCGCATAGAGGAAAGGCGAATGGT
ATTGAGAAAGGAGACAGCGTACGTCGGTCGCTTAAGAGAAAGATAgcaca
ggaaagggaggatggaagccTGGAAGATCAACGGATAGAGTTGACCCGGA
GGCTGGGGAAAGTGCTGCAGAAATTAATCGAAAGTGGACCTCACATTTTG
TACGCCACGCAACTGGAGGAAGCCTTCACGATGCATGTGGAGCGAGAGCG
CTTGGCACGGAGCCAGCGAGACGCAACTGTGGCGTCGCAGCAGGATCATT
CGGAGGGCCCAGGCagaaggagtgagggaaCGAGAAGTGCCGCCTCGTCA
GTAGTAACTGTAGGTCTGCCCACTTTGTATTCGGACCTATCCAGCATCCT
CCTGGACCGTCTTAGGCACGGCCCGAGGAAGAAATTGCGGCGTTTGCTCC
AAGAAGCTATCAAAAGTCAGGCctgggaggtggtggctcGGAAGTATtcg
aggaaaaggcaagcGAAAGAGGGCCGCGAGGCGGGACGGGAGAGCAGCAT
GGGGAAgccagagggaaaggagggcgtaAGAGGGGTACTCGGGAATGACA
GGGTCCCGcagcgggagaagggaaggcgagatggagatgggaggaatggg
ggaagggaaggtgggggagcGAAGTCATCCTCGAGCGCCgcgggcaagaa
gaggagcagggcggtAGGCGACATGCccggggagaaggtgggcgggggaa
atggaggagaggctgaggggagggaggatgcgaggaggagagcggcggGA
ACAgtgaagcggaggaaggaacagTTGAAAGCAccgggcaagggagggaa
ggaggtggggaaggaaggagggacacgggtagcgaaggggaagagcgcAT
TGGACAGCAGAGCGGAGAGCATAATGCCCTTGGGTGGCTCCCACCGGGCG
CCTGGCAAGcccgtggaggggaagaggacgaccGTGCCGGGGCCCAGCGA
CCTCgagaaggggcgggggggcatgCCGAGCTCGGTggggtcgggggagg
ggggagaagggcgaaGGCAGGTGTTACCAAAAGCGCCTCCAGAGAGCCGT
GGACGTCATCCCtcagccctccccctccctcctcctcctcctcctcctcc
tcctcctcctcaaccttCACCCCGGGGGGCGCATCGGGGTCAgggagcct
ccctcccccgtcctgcGCTTCTCACCGGCGTCAGGAAACCGCACGGGAAC
GTCAAGATGCACTCAAGGCGCACCaacaggcggagagggagcgtcGGCAC
CAGCAGTTGGAGTTGCGGCGGGCGGTGGAGCGGCGTAAGCACGAGAACTT
ACAACGCACACTCACCTTCGACGATACGCTGGAAAGCCTCTGGAGTC
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Coding sequence (CDS) from alignment at CM002458.1:1023395..1025041+

>rna2158 ID=rna2158|Name=rna2158|organism=Nannochloropsis gaditana|type=CDS|length=1611bp|location=Sequence derived from alignment at CM002458.1:1023395..1025041+ (Nannochloropsis gaditana)
ATGGCATTGAGCAGTGCAGATGAAGAGTCCTCCTACGGTAATACTTCcag
cgacgacgacgatgaaaAGCTTGATAGCGCTCGGTTTATTCCTACCTCCC
GTAAACTTTCCCCATCGCGCGTGGCTCCTAGAGGCACAAGCCTACAAAAG
GACGTCATTGACTCGGACGAAGCTACCTCTGTGCAAATGGAAGTACTTGA
CTCGGATGAAGcgacaggaaaagaagaggataGAGGGGCAGCGCATAGAG
GAAAGGCGAATGGTATTGAGAAAGGAGACAGCGTACGTCGGTCGCTTAAG
AGAAAGATAgcacaggaaagggaggatggaagccTGGAAGATCAACGGAT
AGAGTTGACCCGGAGGCTGGGGAAAGTGCTGCAGAAATTAATCGAAAGTG
GACCTCACATTTTGTACGCCACGCAACTGGAGGAAGCCTTCACGATGCAT
GTGGAGCGAGAGCGCTTGGCACGGAGCCAGCGAGACGCAACTGTGGCGTC
GCAGCAGGATCATTCGGAGGGCCCAGGCagaaggagtgagggaaCGAGAA
GTGCCGCCTCGTCAGTAGTAACTGTAGGTCTGCCCACTTTGTATTCGGAC
CTATCCAGCATCCTCCTGGACCGTCTTAGGCACGGCCCGAGGAAGAAATT
GCGGCGTTTGCTCCAAGAAGCTATCAAAAGTCAGGCctgggaggtggtgg
ctcGGAAGTATtcgaggaaaaggcaagcGAAAGAGGGCCGCGAGGCGGGA
CGGGAGAGCAGCATGGGGAAgccagagggaaaggagggcgtaAGAGGGGT
ACTCGGGAATGACAGGGTCCCGcagcgggagaagggaaggcgagatggag
atgggaggaatgggggaagggaaggtgggggagcGAAGTCATCCTCGAGC
GCCgcgggcaagaagaggagcagggcggtAGGCGACATGCccggggagaa
ggtgggcgggggaaatggaggagaggctgaggggagggaggatgcgagga
ggagagcggcggGAACAgtgaagcggaggaaggaacagTTGAAAGCAccg
ggcaagggagggaaggaggtggggaaggaaggagggacacgggtagcgaa
ggggaagagcgcATTGGACAGCAGAGCGGAGAGCATAATGCCCTTGGGTG
GCTCCCACCGGGCGCCTGGCAAGcccgtggaggggaagaggacgaccGTG
CCGGGGCCCAGCGACCTCgagaaggggcgggggggcatgCCGAGCTCGGT
ggggtcgggggaggggggagaagggcgaaGGCAGGTGTTACCAAAAGCGC
CTCCAGAGAGCCGTGGACGTCATCCCtcagccctccccctccctcctcct
cctcctcctcctcctcctcctcctcaaccttCACCCCGGGGGGCGCATCG
GGGTCAgggagcctccctcccccgtcctgcGCTTCTCACCGGCGTCAGGA
AACCGCACGGGAACGTCAAGATGCACTCAAGGCGCACCaacaggcggaga
gggagcgtcGGCACCAGCAGTTGGAGTTGCGGCGGGCGGTGGAGCGGCGT
AAGCACGAGAACTTACAACGCACACTCACCTTCGACGATACGCTGGAAAG
CCTCTGGAGTC
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Synonyms
Publications