rna2157, rna2157 (mRNA) Nannochloropsis gaditana

Overview
Namerna2157
Unique Namerna2157
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1344
Alignment locationCM002458.1:1021628..1023395 -

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF3321
Orig transcript idgnl|cribi|Naga_100009g2.607.mrna
Orig protein idgnl|cribi|Naga_100009g2.607
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1021628..1023395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g2gene2060Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2157rna2157-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28564.1cds2149Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2157 ID=rna2157|Name=rna2157|organism=Nannochloropsis gaditana|type=mRNA|length=1344bp
ATGCGTGAAATTGTGCACGTCCAGGCGGGGCAATGTGGGAACCAAATTGG
GGCGAAATTCTGGGAAGTCATCGCCGACGAACATGGCGTAGATCCGACCG
GCGCCTACCATGGTGACTCTGATTTGCAGCTAGAGCGCATTAATGTTTAC
TTTAACGAGGCAACCGGTGGACGCTACGTGCCTCGAGCTATCCTGATGGA
CCTCGAACCCGGAACTATGGACAGTGTCCGCGCTGGCCCCTTCGGTCAAC
TCTTCCGCCCAGATAATTTCGTTTTCGGTCAAACCGGGGCTGGAAACAAT
TGGGCCAAGGGACATTACACGGAAGGTGCGGAGCTTATTGATTCCGTGCT
GGATGTAGTCAGGAAAGAGGCCGAATCCTGCGACTGTCTTCAGGGCTTCC
AGCTCACGCACTCAATGGGCGGGGGCACCGGAGCTGGAATGGGCACGCTT
TTAATCTCCAAAATCCGCGAAGAATACCCAGACCGTGTCATGTCCACCTA
TTCAATCATTCCCTCCCCAAAGGTCTCAGACACGGTGGTGGAGCCTTATA
ACGCCACACTTTCTGTACACCAGCTTGTCGAGAATGCTGATCAGTGCTTC
GTACTCGACAATGAGGCCCTCTATGATATCTGCTTCCGCACCCTGAAATT
GACTACGCCTACATACGGTGACTTGAATCATCTCGTCTCTGCTGCTATTT
GCGGGACGACCTGCTCCCTCCGTTTCCCGGGGCAACTCAACTGTGACTTG
CGCAAGCTGGCCGTCAACATGGTGCCCTTCCCGCGCCTTCACTTCTTCAT
GATTGGCTTCGCGCCTCTGACTTCACGCGGCTCTCAGCAGTATCGGGCTT
TGACAGTCCCCGAGCTCACACAGCAGCAGTTCGATGCCAAGAACATGATG
TGCGCGGCGGACCCCCGCCATGGCCGTTATCTGACGTGCGCGTGCATGTT
CCGGGGTCGCATGTCCACCAAGGAAGTGGACGAGCAGATGCTCAACGTCG
TGAATAAGAATTCCTCATACTTCGTCGAGTGGATTCCAAACAACGTCAAG
GCCTCTATTTGCGACATCCCTCCCAAGGGCCTCAAGATGTCGACCACTTT
CATTGGAAACTCCACGGCGGTCCAGGAGGTCTGGAAACGTGTCTCGGATC
AGTTCACGGCCATGTTCCGGCGTAAGGCCTTCTTGCACTGGTACACTGGC
GAAGGGATGGACGAGATGGAATTTACCGAGGCCGAGAGTAATATGAACGA
CCTCGTCTCTGAGTACCAGCAATATCAGGATGCTACCGCCGAGGAGGAGG
GAGAGTTTGACGAGGATGAAGAGGTCGAGGAGATGATGGCCTGA
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protein sequence of rna2157

>rna2157-protein ID=rna2157-protein|Name=rna2157|organism=Nannochloropsis gaditana|type=polypeptide|length=273bp
MGRKRKAQPVVPVVKSRKRARKIVTQFHKVNDALAILEEDANLNLVDKEA
HRSRLQESLEALGGRAAYQSASQLSVSFHSTSKWVLARLQAMGIIRMQSA
PSLSPSQPSQKPRLLEVGAITTTLLDCPAVQTTAIDLLSRHARIQQIDFF
HLPQPPLSTFDVIVASMLINSLPTASARGDFLRRCHAYLEASKGYLFLIL
PSSCLTHSKYMTVGKFRSLVTTRVGFAVVEEKWTPKTVAFVLRASGKCDE
GRLTAGREKVTSSSWAKKFDILL
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mRNA from alignment at CM002458.1:1021628..1023395-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2157 ID=rna2157|Name=rna2157|organism=Nannochloropsis gaditana|type=mRNA|length=1768bp|location=Sequence derived from alignment at CM002458.1:1021628..1023395- (Nannochloropsis gaditana)
AGGTCCTACACCTAAGCATAAAGTAATGGACGTGTTGTGAGGCGGATTAA
ATGCACATGAATGTCAGCTCTAAAGGGTGAAATGATGGGCGAGTAGGGCG
GATCAAGGGAAGGAGTAACATTGGAAACATCTGGCGAGCGATAAAAAGAC
TGGCTTTCGGGTGTTGGGGAAAGACGTCTCGAGGATGCACATTATCATGC
TAATTCTGCATGGGGCGTTACCTCAGGTGATTACAGATATATAGCCTTCC
TCGTCCACCGTGACGGGGGGCCTGAGAGACATCTTTTTCTGATACGGTAT
CCCTGGGCCACGGGCTCCAAGTGCTGTTATATCCATGAATGATGCTCCCG
TTTCCATCCAAACAGACCACTTCTGGTGCATGGAGACCCAAGACACAGTT
ATATTGGTCTGCAAAGCCTGAAAGACGCCAGGTCTGCGGCCTTTTGCTGC
TCGTTATGATGCCCGCACAGCGTTGGGCAGATATGATGGTGCTCCTCTCC
CGACCCAGTGGGCAACATAACTGATACATTTACATTCCATGGGGAGGAAG
CGCAAAGCCCAGCCCGTGGTGCCGGTTGTAAAAAGTAAGTGGATGTATGA
GGTGCGCGTATGGATCATAAGAATGTCTCGCTCTAGGTGAAGTGCAGAGG
ACCCCCCCCCCCCCCAGAGTTGAGCTGACGCTCTCCCTTCGTCAACTGGC
ATCGAATCAGGCCGAAAGAGGGCTCGTAAGATTGTGACGCAATTTCATAA
AGTCAACGATGCCCTGGCCATTCTTGAGGAGGACGCGAACCTAAATTTGG
TGGATAAGGAGGCACACCGCAGTCGGTGAGTATCTATGTGTACAGGGGTT
GCTATCTTGCGCGGCACAAGTCCCAACATACGATAACCATAACTGAGCAC
ACGCAATGATCCCTGCTTCCAGGCTTCAAGAAAGTTTGGAGGCACTCGGG
GGCCGGGCAGCCTATCAATCTGCCTCCCAGCTCTCTGTCTCCTTTCACAG
TACGAGCAAGTGGGTCCTCGCCCGCCTACAAGCCATGGGAATCATCAGGA
TGCAGAGCGCCCCATCCTTGTCGCCCTCTCAGCCCTCTCAGAAACCTCGG
CTGCTGGAGGTTGGGGCTATCACCACCACCCTCCTCGATTGTCCTGCTGT
GCAAACTACCGCCATCGATCTCCTCTCTCGCCACGCCCGAATTCAACAAA
TCGACTTCTTTCACCTGCCACAACCTCCGCTTTCCACATTCGATGTGATT
GTCGCCTCCATGCTGATCAATTCCCTTCCTACCGCTTCTGCCCGGGGCGA
CTTTCTCCGTCGCTGCCACGCCTATCTAGAAGCGAGCAAAGGATATTTGT
TCCTCATCTTGCCCTCCTCTTGCCTGACCCACTCCAAATACATGACTGTG
GGAAAATTCCGCTCACTGGTCACGACACGGGTAGGATTCGCGGTCGTGGA
GGAAAAGTGGACGCCGAAAACGGTTGCTTTTGTGCTGCGCGCGTCTGGAA
AATGCGATGAGGGAAGACTAACGGCGGGGAGGGAAAAAGTGACGTCTTCG
TCCTGGGCAAAAAAGTTTGACATACTTTTGTGAATCGTCGGGGGCAAAAA
GATTGGAAGTCAGTCGGGTGTGTAGGCGGAGACATTGTTTGGGGTCGAGA
AGTGAGGGAGGGATATGTTCTTCGACGGATAATTTGAAAGCGTGTGGCTT
GTTACTATCAATGTACAGCTCCTCATAATTAATAATTGGAAAGAAAGAAT
TGAATTCGGCAAAAATGT
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Coding sequence (CDS) from alignment at CM002458.1:1021628..1023395-

>rna2157 ID=rna2157|Name=rna2157|organism=Nannochloropsis gaditana|type=CDS|length=2466bp|location=Sequence derived from alignment at CM002458.1:1021628..1023395- (Nannochloropsis gaditana)
GCTTCAAGAAAGTTTGGAGGCACTCGGGGGCCGGGCAGCCTATCAATCTG
CCTCCCAGCTCTCTGTCTCCTTTCACAGTACGAGCAAGTGGGTCCTCGCC
CGCCTACAAGCCATGGGAATCATCAGGATGCAGAGCGCCCCATCCTTGTC
GCCCTCTCAGCCCTCTCAGAAACCTCGGCTGCTGGAGGTTGGGGCTATCA
CCACCACCCTCCTCGATTGTCCTGCTGTGCAAACTACCGCCATCGATCTC
CTCTCTCGCCACGCCCGAATTCAACAAATCGACTTCTTTCACCTGCCACA
ACCTCCGCTTTCCACATTCGATGTGATTGTCGCCTCCATGCTGATCAATT
CCCTTCCTACCGCTTCTGCCCGGGGCGACTTTCTCCGTCGCTGCCACGCC
TATCTAGAAGCGAGCAAAGGATATTTGTTCCTCATCTTGCCCTCCTCTTG
CCTGACCCACTCCAAATACATGACTGTGGGAAAATTCCGCTCACTGGTCA
CGACACGGGTAGGATTCGCGGTCGTGGAGGAAAAGTGGACGCCGAAAACG
GTTGCTTTTGTGCTGCGCGCGTCTGGAAAATGCGATGAGGGAAGACTAAC
GGCGGGGAGGGAAAAAGTGACGTCTTCGTCCTGGGCAAAAAAGTTTGACA
TACTTTTGTGAGCCGAAAGAGGGCTCGTAAGATTGTGACGCAATTTCATA
AAGTCAACGATGCCCTGGCCATTCTTGAGGAGGACGCGAACCTAAATTTG
GTGGATAAGGAGGCACACCGCAGTCGATGGGGAGGAAGCGCAAAGCCCAG
CCCGTGGTGCCGGTTGTAAAAAGCTTCAAGAAAGTTTGGAGGCACTCGGG
GGCCGGGCAGCCTATCAATCTGCCTCCCAGCTCTCTGTCTCCTTTCACAG
TACGAGCAAGTGGGTCCTCGCCCGCCTACAAGCCATGGGAATCATCAGGA
TGCAGAGCGCCCCATCCTTGTCGCCCTCTCAGCCCTCTCAGAAACCTCGG
CTGCTGGAGGTTGGGGCTATCACCACCACCCTCCTCGATTGTCCTGCTGT
GCAAACTACCGCCATCGATCTCCTCTCTCGCCACGCCCGAATTCAACAAA
TCGACTTCTTTCACCTGCCACAACCTCCGCTTTCCACATTCGATGTGATT
GTCGCCTCCATGCTGATCAATTCCCTTCCTACCGCTTCTGCCCGGGGCGA
CTTTCTCCGTCGCTGCCACGCCTATCTAGAAGCGAGCAAAGGATATTTGT
TCCTCATCTTGCCCTCCTCTTGCCTGACCCACTCCAAATACATGACTGTG
GGAAAATTCCGCTCACTGGTCACGACACGGGTAGGATTCGCGGTCGTGGA
GGAAAAGTGGACGCCGAAAACGGTTGCTTTTGTGCTGCGCGCGTCTGGAA
AATGCGATGAGGGAAGACTAACGGCGGGGAGGGAAAAAGTGACGTCTTCG
TCCTGGGCAAAAAAGTTTGACATACTTTTGTGAGCCGAAAGAGGGCTCGT
AAGATTGTGACGCAATTTCATAAAGTCAACGATGCCCTGGCCATTCTTGA
GGAGGACGCGAACCTAAATTTGGTGGATAAGGAGGCACACCGCAGTCGAT
GGGGAGGAAGCGCAAAGCCCAGCCCGTGGTGCCGGTTGTAAAAAGCTTCA
AGAAAGTTTGGAGGCACTCGGGGGCCGGGCAGCCTATCAATCTGCCTCCC
AGCTCTCTGTCTCCTTTCACAGTACGAGCAAGTGGGTCCTCGCCCGCCTA
CAAGCCATGGGAATCATCAGGATGCAGAGCGCCCCATCCTTGTCGCCCTC
TCAGCCCTCTCAGAAACCTCGGCTGCTGGAGGTTGGGGCTATCACCACCA
CCCTCCTCGATTGTCCTGCTGTGCAAACTACCGCCATCGATCTCCTCTCT
CGCCACGCCCGAATTCAACAAATCGACTTCTTTCACCTGCCACAACCTCC
GCTTTCCACATTCGATGTGATTGTCGCCTCCATGCTGATCAATTCCCTTC
CTACCGCTTCTGCCCGGGGCGACTTTCTCCGTCGCTGCCACGCCTATCTA
GAAGCGAGCAAAGGATATTTGTTCCTCATCTTGCCCTCCTCTTGCCTGAC
CCACTCCAAATACATGACTGTGGGAAAATTCCGCTCACTGGTCACGACAC
GGGTAGGATTCGCGGTCGTGGAGGAAAAGTGGACGCCGAAAACGGTTGCT
TTTGTGCTGCGCGCGTCTGGAAAATGCGATGAGGGAAGACTAACGGCGGG
GAGGGAAAAAGTGACGTCTTCGTCCTGGGCAAAAAAGTTTGACATACTTT
TGTGAGCCGAAAGAGGGCTCGTAAGATTGTGACGCAATTTCATAAAGTCA
ACGATGCCCTGGCCATTCTTGAGGAGGACGCGAACCTAAATTTGGTGGAT
AAGGAGGCACACCGCAGTCGATGGGGAGGAAGCGCAAAGCCCAGCCCGTG
GTGCCGGTTGTAAAAA
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Synonyms
Publications