rna2152, rna2152 (mRNA) Nannochloropsis gaditana

Overview
Namerna2152
Unique Namerna2152
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1141
Alignment locationCM002458.1:1005433..1006832 +

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Properties
Property NameValue
Productserine threonine protein kinase
Orig transcript idgnl|cribi|Naga_100009g7.612.mrna
Orig protein idgnl|cribi|Naga_100009g7.612
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1005433..1006832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g7gene2055Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2152rna2152-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28569.1cds2144Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2152 ID=rna2152|Name=rna2152|organism=Nannochloropsis gaditana|type=mRNA|length=1141bp
CTGAAATCTTGCGTCGTTCGTCTCGCGCTAGTATCCTCCTCTTTTCTTGC
CATTACTACTGCCTCGACAATGTTGCATGCGGATTGCGATCTGTGTTGTT
TGGACTCAGTTTTTGATGAATTGCTCAAGACGGGGCTATCGCGGTATTGC
CTTTCCTTAAGCACGCATATCGCTCTTCGCTTGGTCTCGGTTGTTTATCC
GTTCCTTTAACCTCGACACGGCAAGACCGTACGAAGCTATGCTTACTTAT
TCATAACGACCAAACCAGATGCCCGCTGCTTTGTACTACGGCGACACTCA
AGGGTGGCAAATGTGGAGGGAGTGCGCGCTTTTGATTCCCATGTTGAGCA
CGGCTTTGCTGGTTGTAGCTGTATTTTCTCGGGATTGGAGCCGACTGACC
ACCCACACTACACTCTGGAGTGAGGTTCTCATCGATGACTTCTGGGGCCT
GTGGCAGTGGAGCTCGGTCATGACTTCGGCCTCGTCGACTGTTCGCCTTT
CTTTTGATTACAACTGGTGCAATCGCGACGACACGACGGACCAGTGCCAC
CTCCTTGTCCTTGCTCGGGCATTGGCGGTGGCTACTGTCGCCTTGGAGGT
CGCCGCCGTCCTGGGCATGCTGATCGTGGAATGTCGCACAGCCTACCGAG
CAGGTTTCTCGGCCGAGTACGCATGCATGGCGCTCACTACTTCCCACCTC
ATCTGCGCCATCCTGATGCTGGTCGTTTGGTCTTCTGTGCAAGACGAGCT
GCGCGCACAGGACTTGACCTCGGGCAGGAGTAAAATCCATTTTGGCTTCT
CGTGGTGGTTCTTTCTGGTGTCGGCGGTCTCCACGGTCATGACGAACTTT
TGCGTGATCAAAGAGCTGGCACACAAGTCTGCTTATCGTTCAATAAGTCC
CCCGGGAAAGACGGACTTGCGAAGTCGAAATGTGCGATGATGTTGTGGAG
GAGCTGGGTCAAGAGAGGAAAGAGGAGTCAAGTCTATGTTGAGCGAGAGA
GGGGACGCCGACGCCTATGTAATAAATGTATGAAAGGCAGTTTACACGAA
AAGGAGAAAGATTAAACCCTTAGGCCTGCTTAAGTTGCGGAAGAGCGCCG
GTAAAAACTGAACAAGCAAAGCTACATGGTGCAGGAATTTT
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protein sequence of rna2152

>rna2152-protein ID=rna2152-protein|Name=rna2152|organism=Nannochloropsis gaditana|type=polypeptide|length=295bp
MARKEEDTSARRTTQDFSLPLLVLLLSRLPLACTFSTPTSSSAIGINHGD
VLKTLNNAATIPLIDRVPTFRFYQGGVCQLQLSGRGGLAECRARLHVAIS
TLLNNKTSSKQTEREEIHHEENGVSQRCLVADIVEIESLEMLEGMLEKQR
VQQSSTAQSVSCGSNLNDDVLLVKFYGRSCKQCVELGPLYDTLPFVYRDK
SLRFGRADVTNFPTLVVPPPPPQNFASLDRSQNIEDRLEGCPRCGGGGFV
VCTECNGQGHLIRSVDGHTVADVCMTCVGQRKIPCQQCGGKCYLC
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mRNA from alignment at CM002458.1:1005433..1006832+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2152 ID=rna2152|Name=rna2152|organism=Nannochloropsis gaditana|type=mRNA|length=1400bp|location=Sequence derived from alignment at CM002458.1:1005433..1006832+ (Nannochloropsis gaditana)
TGCCGTGTCGAGGTTAAAGGAACGGATAAACAACCGAGACCAAGCGAAGA
GCGATATGCGTGCTTAAGGAAAGGCAATACCGCGATAGCCCCGTCTTGAG
CAATTCATCAAAAACTGAGTCCAAACAACACAGATCGCAATCCGCATGCA
ACATTGTCGAGGCAGTAGTAATggcaagaaaagaggaggatacTAGCGCG
AGACGAACGACGCAAGATTTcagtctccctcttctcgtACTGCTACTCAG
CCGGCTCCCCCTCGCGTGCACGTTTAGCACTCccacaagcagcagcgccA
TCGGCATAAATCATGGCGATGTGCTAAAAACTCTAAATAATGCCGCCACT
ATCCCCCTGATCGATCGAGTCCCGACTTTTCGGTTTTATCAAGGTGGTGT
GTGCCAACTGCAGCTATCAGGGCGAGGCGGCTTAGCCGAGTGCCGGGCCC
GCCTGCATGTGGCGATCTCTACCCTGCTTAACAACAAAACATCGTCCAAA
CAAACGGAACGTGAAGAAATTCACCATGAAGAGAACGGAGTCTCTCAAAG
ATGTTTAGTGGCTGATATCGTGGAAATCGAGTCACTTGAGATGTTGGAGG
GTATGCTTGAAAAGCAGCGAGTGCAGCAAAGTAGTACGGCGCAGAGTGTT
TCATGTGGTAGCAATTTGAATGATGACGTGTTACTAGTCAAGTTCTATGG
CAGATCTTGCAAGCAGTGCGTGGAACTCGGGCCTTTGTATGATACGCTGC
CCTTCGTCTACAGGGACAAGAGCCTGAGATTCGGACGAGCAGACGTCACA
AACTTTCCCACACTTGTtgttcctccaccaccaccccaaAATTTTGCCAG
TTTGGATCGAAGTCAAAACATTGAAGATCGTCTGGAGGGCTGCCCGCGct
gtgggggcgggggcttcGTCGTTTGTACAGAATGTAATGGACAGGGACAC
CTGATACGAAGTGTAGACGGGCACACGGTTGCAGACGTGTGTATGACCTG
CGTAGGTCAAAGAAAAATCCCCTGTCAACAGTGCGGCGGGAAATGTTACT
TGTGCTGATGTACAGACAGACAATGGCATTGCGAATACGTGGAGAAATAT
AGAAAAGCAGTATACGTAATGGAGAGATCACAAGAATTTTTACTCGTTAT
CACCCATAAAATCACGCACGTTTGTAAGGTTGGGCGTAAACATTAGGAAT
ACTACTAAGACGATTCTTCATGCTATCTCTGCTGTCTTGTCGAGCTTAAA
ATACTATATTACTAATATGTACGATCTATCATCACTGTAAGAATATCGTC
TGTATTTTCAACTATATATCCTCTTCGTAAGATACAAGAAAGCACCAGTA
TCGTTTTGAATCCCTACAAGACCTGTAGCTTGATCAAAATTCAGTGTTGT
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Coding sequence (CDS) from alignment at CM002458.1:1005433..1006832+

>rna2152 ID=rna2152|Name=rna2152|organism=Nannochloropsis gaditana|type=CDS|length=888bp|location=Sequence derived from alignment at CM002458.1:1005433..1006832+ (Nannochloropsis gaditana)
ATggcaagaaaagaggaggatacTAGCGCGAGACGAACGACGCAAGATTT
cagtctccctcttctcgtACTGCTACTCAGCCGGCTCCCCCTCGCGTGCA
CGTTTAGCACTCccacaagcagcagcgccATCGGCATAAATCATGGCGAT
GTGCTAAAAACTCTAAATAATGCCGCCACTATCCCCCTGATCGATCGAGT
CCCGACTTTTCGGTTTTATCAAGGTGGTGTGTGCCAACTGCAGCTATCAG
GGCGAGGCGGCTTAGCCGAGTGCCGGGCCCGCCTGCATGTGGCGATCTCT
ACCCTGCTTAACAACAAAACATCGTCCAAACAAACGGAACGTGAAGAAAT
TCACCATGAAGAGAACGGAGTCTCTCAAAGATGTTTAGTGGCTGATATCG
TGGAAATCGAGTCACTTGAGATGTTGGAGGGTATGCTTGAAAAGCAGCGA
GTGCAGCAAAGTAGTACGGCGCAGAGTGTTTCATGTGGTAGCAATTTGAA
TGATGACGTGTTACTAGTCAAGTTCTATGGCAGATCTTGCAAGCAGTGCG
TGGAACTCGGGCCTTTGTATGATACGCTGCCCTTCGTCTACAGGGACAAG
AGCCTGAGATTCGGACGAGCAGACGTCACAAACTTTCCCACACTTGTtgt
tcctccaccaccaccccaaAATTTTGCCAGTTTGGATCGAAGTCAAAACA
TTGAAGATCGTCTGGAGGGCTGCCCGCGctgtgggggcgggggcttcGTC
GTTTGTACAGAATGTAATGGACAGGGACACCTGATACGAAGTGTAGACGG
GCACACGGTTGCAGACGTGTGTATGACCTGCGTAGGTCAAAGAAAAATCC
CCTGTCAACAGTGCGGCGGGAAATGTTACTTGTGCTGA
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Synonyms
Publications