rna215, rna215 (mRNA) Nannochloropsis gaditana

Overview
Namerna215
Unique Namerna215
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length359
Alignment locationCM002455.1:544626..545754 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100100g24.8916.mrna
Orig protein idgnl|cribi|Naga_100100g24.8916
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:544626..545754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100100g24gene206Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30448.1cds215Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna215rna215-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna215 ID=rna215|Name=rna215|organism=Nannochloropsis gaditana|type=mRNA|length=359bp
TGGAGGTCGGAGACGAGGGAGCGATGCAGGATGCCGATTGCGAACTGGCG
ACAAGGGAGGAAAGTTCAAGCAGGTCCACGCGTGCATGTAAGCGAGCATG
GGAGGCGGAGGGTGTCTTCGCGGAGAAGACGGTCTCACATCTCTGAATCG
TCTGAGAGGCATTGCAAGGTGTGCGCCTTTTCGGCAAGGGTCATAGAGAG
AAAGAGAAAGGAACGAAAAAGCAATATCAGGATAACAACAATAGCGCCCT
AGCAGACGAAGGGGGTGGATTCAAACGTCTGATAGATTCCCGCAACATCT
GAACATGCGTACTTTATTATTTGTTTGGTGCCATGCGGGCGTAAACACAC
GTCACGGAG
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protein sequence of rna215

>rna215-protein ID=rna215-protein|Name=rna215|organism=Nannochloropsis gaditana|type=polypeptide|length=101bp
MLPQKCGSSLNDTRAVRRAEVEEKGREGRTVPVTSHGALHFSRLPAFFVM
MHWTERSKEQGMKSMSCAAIGGEGKFVMHLRAAGELGGSMMYLSSRATAM
S
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mRNA from alignment at CM002455.1:544626..545754-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna215 ID=rna215|Name=rna215|organism=Nannochloropsis gaditana|type=mRNA|length=1129bp|location=Sequence derived from alignment at CM002455.1:544626..545754- (Nannochloropsis gaditana)
CGGAGTGGGAGCTCAGGCGGATGGCCAGTATGCCGGAGGATATGCGGAAG
GAGCCCACTTGTACGGAACCCAGCAACAGGGATATACAGGAGCGACCTCG
GGGACCTATGAAGGGGGCGGGGCCGGCAGTAGGGGCGGGGGAGGGGGAGG
GGGGGCAGCCAATGGGGGATATCACGCGGCCGAGGTCTACCAGCAAGCCT
TCGTAGGTTACCCCGCCCAGCATCACCAGTATGGAGGCCCATCGGCTGTC
TATGGTAACTACCGTCAGGCCTCGTGAGGGGGGGGGGGGCACGGAGAAGC
AGGGGGGGCGCCGAGACGGGTCAGTGGACGGAGGTGGCTCGCTTTGTCAG
GATGTGGACGGGTAGAGGAAGGCCAGAGCGGTGGGCGAGACATGGAGTTT
GAAACAAGGGAGGCACGGGGTAGATGGAAACGGGGCTGGAGGGGCCGAGC
CAGGAGGGAGAGCGGATGCACCGTCAGGGCATGAAAGCATAAGCAGCAGA
AGATGAAGCAGGAGGGAGCGGCTGGAGGGAGGGCTACGACGCAAGCCACC
ATATATGAAGCAGACGGAGGACATTGATCAAAGATGCTGCCACAGAAGTG
TGGGAGCTCTCTAAACGACACGAGGGCGGTGAGAAGAGCGGAAGTGGAGG
AAAAAGGGAGGGAGGGGCGTACGGTCCCTGTGACTTCCCATGGGGCCCTT
CACTTTTCCCGCTTGCCCGCATTTTTTGTCATGATGCACTGGACTGAGCG
GTCGAAGGAGCAAGGTATGAAAAGTATGAGCTGTGCAGCCATTGGGGGAG
AGGGAAAATTTGTGATGCATTTGCGGGCAGCGGGGGAGCTTGGAGGGAGT
ATGATGTACTTATCCTCGCGCGCGACTGCGATGTCGTGAGGGCGAGTTGT
GGAAGGTCGGGCAGATGGGGTAAGGGACCTGGTTTTTGCACGGAGCGTGT
ACCGGTATAGTCCTCCCACTCCTCCTCGGTGAAGGCCAGAATGGTCGAGA
GAGGGTTTTTGGTGTGTGGGGTGGGGCGGGCGCCAAAGATGGGGAGGCGG
GGGAGGTATGGGGTGGAGCCCGGGGGGTGGCCTGAGGATAAGCGGGTCGG
ACGAGAGAAGGAGCCTGGAGACCCTGACG
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Coding sequence (CDS) from alignment at CM002455.1:544626..545754-

>rna215 ID=rna215|Name=rna215|organism=Nannochloropsis gaditana|type=CDS|length=306bp|location=Sequence derived from alignment at CM002455.1:544626..545754- (Nannochloropsis gaditana)
ATGCTGCCACAGAAGTGTGGGAGCTCTCTAAACGACACGAGGGCGGTGAG
AAGAGCGGAAGTGGAGGAAAAAGGGAGGGAGGGGCGTACGGTCCCTGTGA
CTTCCCATGGGGCCCTTCACTTTTCCCGCTTGCCCGCATTTTTTGTCATG
ATGCACTGGACTGAGCGGTCGAAGGAGCAAGGTATGAAAAGTATGAGCTG
TGCAGCCATTGGGGGAGAGGGAAAATTTGTGATGCATTTGCGGGCAGCGG
GGGAGCTTGGAGGGAGTATGATGTACTTATCCTCGCGCGCGACTGCGATG
TCGTGA
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Synonyms
Publications