rna2144, rna2144 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2144
Unique Name	rna2144
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1757
Alignment location	CM002458.1:982201..983563 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100009g16.609.mrna
Orig protein id	gnl\|cribi\|Naga_100009g16.609
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:982201..983563 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g16	gene2047	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2144	rna2144-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28566.1	cds2136	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:982201..983563-
coding sequence from alignment at CM002458.1:982201..983563-

mRNA sequence

>rna2144 ID=rna2144|Name=rna2144|organism=Nannochloropsis gaditana|type=mRNA|length=1757bp
CGTGGGGGATTCTGTTTCTTTTCTACTCCGTGACTTCAATGTAGTCACAG
GTCTTCTAGCATTGTGCCGAGGTTAAATAACGATCATGAAGCAGTTGCTT
TAATTCCTGAGGGATCTAACCGCGACTTCCCCATTTTTTGGGACCAGGTC
CGGGCCTCCTACATCATCACGTCCCTACAAAGACTGTTTTCACTTTAGAC
GGAACGCGAGACCTGGGCGTCCCACTTGACGGTGAACTGTGTGAGAGACG
TTGTCTCTTACCATTTGAGCCCACCTTCCTACTTGTCAAACATGGCCTCG
TCCACTGCCCTGATGGAGGACAGGATGGAGAGGAGTCCGAATCCCGGCAG
TCCTCCCGGCAACAGCCTTGAAGGCCAGCTGGAAAGTTTCAGCTTGTTGC
CTCACAAAACGGAAGAAGAGAATGAGGAAACGGCGCAAACTGCTACGCCT
GGGGTAAGCGACATCCTCTCTGTGAGGGGGGAGACAAGTGAGAACACGCC
AATGGGCACAAGTGGGCAATCGAAGAAGGGGATCGTGGACATGCTGTACA
ACAACAGGCCCAAAGAGTTAGAAACACGGCCTCGTTACATTGATGCACAC
CCGGAAGCCCGACTTGTCCTCCAAGCCTTCTTCAGCGCCGTGTTGGCGGA
GGAGCCCGAGGATGTTTATGCCTTCGCCCGGCAGTACTTCAGCCAACGAG
TGAAGGTCCCGAAAGAAGAACTCTTGCGACCTTTGGTTATATGTGGGCCA
TCGGGGGTAGGGAAAGGGACGCTGATGAACATGCTGTTTGAGGAGTTTGG
AGGCTACTTCGGCTTCTCTGTGTCTCACACGACACGGGCACCGCGACCTG
GAGAGGTGGAAGGCGTACACTACAATTTTACCTCAAGAGATGCCATGGAA
GCGGCCATCGAGGAAGGGCGTTTCCTGGAATTTGCCCGAGTGCACACCAA
TTTGTACGGAACGAGCCTTGAGGCCGTGCGGCAAGTCCAGCGCGCGGGCA
AAGTGTGTGTGCTCGACATCGACGTACAAGGGGTGATAAAGGTAAAGGAA
ACCGACGTGAACCCCCACTACGTGTTCATCGCCCCGCCATCCGTGGAGCA
TTTGGAGGCGAGGCTGCGAGGCCGGGGCACGGAGTCTGCGAAAGACATTG
AGACACGGCTGGGGGCGGCGCGTGCGGAGATCGAGTATGGCCTCGCGAAG
GGAAATTTTGAGCATGTGGTCGTCAATGATACCTTGGAAAAGGCCTATGC
TGACTTGAAAACGACATTGGTTGGATTCTATTCGCATTTGGCGGCTAAGA
CCGCTTGAAAAGAGAGAAGCGACGGCGTTATGCAGCGCCACTTTGATGTC
TTCGGTGTCTGACAAGAGTTCAGTTTCTTCATGGAACAAATTCGGGGAAT
ATGGTAAGTGCACGCGTGCCACTATTCATGGTCTCATCCTTTGCAAAGAC
CATCAAATCGTAGTGCCACGAATAGAGAGAAAGACTGCATATTCTCGGGT
GTAGCCCTGCTTTTCGTGAAGAATAGCCTCAGGAATCGCACGTTGTTCAG
TAGATACAGAAATATTTGGTTAGATTATTTTAAAAAAGATCGCTTTAGAT
CTCCGCAAAAGTCAGGTCCGCGGGCTTGCATGTTACAATGGTCGCTTTGG
CTCGACTGGAGAACTAATTAAGTTCAAGGAAAGAAGATCTGGAAGATCTG
GTAGACGAACCAGGCACTACATGGCAATATATAGATTTTAGCATATCTCT
GTCGTCC

protein sequence of rna2144

>rna2144-protein ID=rna2144-protein|Name=rna2144|organism=Nannochloropsis gaditana|type=polypeptide|length=342bp
MLKVDGGKTQVLFDHSAQFLSAPSSYVSTSPSSPSDTWNKWVCEMECDGI
LREWDSQRIGTLSRGGVFSPRATDSGGVQPRALIGSGGMRAIPAYMARNL
EIDRPKWVSKARQNKDGTWRLWHYQEELDDFDYLVVAHNGKCAARLMKSA
GPALAPVARLLETKFGANLRGGSTPRFMQLCSLYVLMVVLDGPVPLPTPN
LEGAFVEGVPALSWVADQGAKLGQNVEKGPENEGTRRAWVIVSSPTFAEE
HKVPQENIPIETAAEVTSLLLQAFRLALGKEGREYDAAFKVSTSALQLWG
AGNPISVADVSEEVPFIFQASTGCGVCGDWMLAPSIPAAARH

mRNA from alignment at CM002458.1:982201..983563-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2144 ID=rna2144|Name=rna2144|organism=Nannochloropsis gaditana|type=mRNA|length=1363bp|location=Sequence derived from alignment at CM002458.1:982201..983563- (Nannochloropsis gaditana)
ATGCTCAAAGTAGACGGTGGGAAAACTCAAGTGCTTTTTGACCACTCTGC
TCAGTTCCTGAGTGCGCCGTCCTCCTATGTTTCCACCTCCCCGTCCTCCC
CCTCTGACACCTGGAACAAGTGGGTATGCGAGATGGAGTGCGACGGCATA
CTCCGCGAATGGGACAGCCAACGTATTGGAACCCTTTCCAGAGGCGGGGT
CTTTTCGCCCCGCGCCACAGACTCAGGCGGCGTGCAGCCTCGCGCACTGA
TCGGAAGCGGTGGCATGCGGGCTATCCCGGCTTACATGGCAAGAAACCTC
GAGATTGACAGGCCTAAATGGGTGTCAAAGGCCAGGCAGAACAAAGACGG
CACATGGCGCCTCTGGCACTACCAAGAGGAACTGGATGACTTCGACTACC
TTGTAGTCGCCCACAATGGGAAATGTGCGGCACGTTTGATGAAATCTGCA
GGACCGGCACTGGCGCCCGTTGCCCGTCTCTTGGAGACCAAATTCGGCGC
CAACCTCCGCGGAGGCTCGACTCCACGGTTCATGCAACTGTGTAGCTTGT
ACGTGCTCATGGTGGTGTTAGACGGTCCTGTGCCGCTGCCGACACCGAAT
TTGGAAGGCGCTTTTGTGGAAGGGGTGCCAGCTCTGTCCTGGGTGGCCGA
CCAAGGGGCAAAGCTCGGGCAGAACGTGGAGAAGGGCCCAGAAAACGAGG
GCACAAGGAGGGCGTGGGTCATCGTCTCTTCCCCAACCTTTGCCGAAGAG
CACAAGGTTCCCCAGGAGAATATTCCCATTGAGACAGCCGCAGAGGTCAC
CTCTCTCTTGTTACAGGCTTTTCGCCTGGCGTTGGGAAAGGAAGGGCGAG
AATACGACGCGGCCTTCAAGGTCTCCACTTCCGCTTTACAGTTGTGGGGA
GCCGGGAACCCGATCTCTGTGGCAGACGTGTCGGAGGAGGTACCCTTCAT
CTTCCAGGCAAGCACGGGGTGTGGAGTGTGTGGGGATTGGATGTTGGCCC
CTTCGATACCCGCGGCAGCCAGGTCAGGAATAGCCCTGGCAAAGCATATC
GCAGACCATCACAAGGCGAAAAAAAAATTGCACGAAGGGGGGGGGGTGGG
TCAGATCTTGACGCAGGATATGAATGTGGGCTGTAAATTCAGGCCAGCGC
AGGGAGCGAGACCTATCGGAGCCTTTGAGGGGGATAAACCGCCAACAGCC
GCGTCCGTGTCGAGGAATCTACAGCGCGGAGGAGGTCATATGCGGGGTGG
GAGAAGGGAGGGGCGAGGAGGACGTGGAGGTAAAGGGGGAAGAGGGGGTA
GAGGGGAGGGGAACCACATCCCAGGCTGCTAAAAGCAATGTAATTAACTA
CCCCAGACACTAG

Coding sequence (CDS) from alignment at CM002458.1:982201..983563-

>rna2144 ID=rna2144|Name=rna2144|organism=Nannochloropsis gaditana|type=CDS|length=2058bp|location=Sequence derived from alignment at CM002458.1:982201..983563- (Nannochloropsis gaditana)
ACACTAGATGCTCAAAGTAGACGGTGGGAAAACTCAAGTGCTTTTTGACC
ACTCTGCTCAGTTCCTGAGTGCGCCGTCCTCCTATGTTTCCACCTCCCCG
TCCTCCCCCTCTGACACCTGGAACAAGTGGGTATGCGAGATGGAGTGCGA
CGGCATACTCCGCGAATGGGACAGCCAACGTATTGGAACCCTTTCCAGAG
GCGGGGTCTTTTCGCCCCGCGCCACAGACTCAGGCGGCGTGCAGCCTCGC
GCACTGATCGGAAGCGGTGGCATGCGGGCTATCCCGGCTTACATGGCAAG
AAACCTCGAGATTGACAGGCCTAAATGGGTGTCAAAGGCCAGGCAGAACA
AAGACGGCACATGGCGCCTCTGGCACTACCAAGAGGAACTGGATGACTTC
GACTACCTTGTAGTCGCCCACAATGGGAAATGTGCGGCACGTTTGATGAA
ATCTGCAGGACCGGCACTGGCGCCCGTTGCCCGTCTCTTGGAGACCAAAT
TCGGCGCCAACCTCCGCGGAGGCTCGACTCCACGGTTCATGCAACTGTGT
AGCTTGTACGTGCTCATGGTGGTGTTAGACGGTCCTGTGCCGCTGCCGAC
ACCGAATTTGGAAGGCGCTTTTGTGGAAGGGGTGCCAGCTCTGTCCTGGG
TGGCCGACCAAGGGGCAAAGCTCGGGCAGAACGTGGAGAAGGGCCCAGAA
AACGAGGGCACAAGGAGGGCGTGGGTCATCGTCTCTTCCCCAACCTTTGC
CGAAGAGCACAAGGTTCCCCAGGAGAATATTCCCATTGAGACAGCCGCAG
AGGTCACCTCTCTCTTGTTACAGGCTTTTCGCCTGGCGTTGGGAAAGGAA
GGGCGAGAATACGACGCGGCCTTCAAGGTCTCCACTTCCGCTTTACAGTT
GTGGGGAGCCGGGAACCCGATCTCTGTGGCAGACGTGTCGGAGGAGGTAC
CCTTCATCTTCCAGGCAAGCACGGGGTGTGGAGTGTGTGGGGATTGGATG
TTGGCCCCTTCGATACCCGCGGCAGCCAGACACTAGATGCTCAAAGTAGA
CGGTGGGAAAACTCAAGTGCTTTTTGACCACTCTGCTCAGTTCCTGAGTG
CGCCGTCCTCCTATGTTTCCACCTCCCCGTCCTCCCCCTCTGACACCTGG
AACAAGTGGGTATGCGAGATGGAGTGCGACGGCATACTCCGCGAATGGGA
CAGCCAACGTATTGGAACCCTTTCCAGAGGCGGGGTCTTTTCGCCCCGCG
CCACAGACTCAGGCGGCGTGCAGCCTCGCGCACTGATCGGAAGCGGTGGC
ATGCGGGCTATCCCGGCTTACATGGCAAGAAACCTCGAGATTGACAGGCC
TAAATGGGTGTCAAAGGCCAGGCAGAACAAAGACGGCACATGGCGCCTCT
GGCACTACCAAGAGGAACTGGATGACTTCGACTACCTTGTAGTCGCCCAC
AATGGGAAATGTGCGGCACGTTTGATGAAATCTGCAGGACCGGCACTGGC
GCCCGTTGCCCGTCTCTTGGAGACCAAATTCGGCGCCAACCTCCGCGGAG
GCTCGACTCCACGGTTCATGCAACTGTGTAGCTTGTACGTGCTCATGGTG
GTGTTAGACGGTCCTGTGCCGCTGCCGACACCGAATTTGGAAGGCGCTTT
TGTGGAAGGGGTGCCAGCTCTGTCCTGGGTGGCCGACCAAGGGGCAAAGC
TCGGGCAGAACGTGGAGAAGGGCCCAGAAAACGAGGGCACAAGGAGGGCG
TGGGTCATCGTCTCTTCCCCAACCTTTGCCGAAGAGCACAAGGTTCCCCA
GGAGAATATTCCCATTGAGACAGCCGCAGAGGTCACCTCTCTCTTGTTAC
AGGCTTTTCGCCTGGCGTTGGGAAAGGAAGGGCGAGAATACGACGCGGCC
TTCAAGGTCTCCACTTCCGCTTTACAGTTGTGGGGAGCCGGGAACCCGAT
CTCTGTGGCAGACGTGTCGGAGGAGGTACCCTTCATCTTCCAGGCAAGCA
CGGGGTGTGGAGTGTGTGGGGATTGGATGTTGGCCCCTTCGATACCCGCG
GCAGCCAG

Synonyms

Publications