rna2143, rna2143 (mRNA) Nannochloropsis gaditana

Overview
Namerna2143
Unique Namerna2143
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1922
Alignment locationCM002458.1:980434..982190 +

Link to JBrowse

Properties
Property NameValue
Productgualynate kinase-1
Orig transcript idgnl|cribi|Naga_100009g18.583.mrna
Orig protein idgnl|cribi|Naga_100009g18.583
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:980434..982190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g18gene2046Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2143rna2143-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28540.1cds2135Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2143 ID=rna2143|Name=rna2143|organism=Nannochloropsis gaditana|type=mRNA|length=1922bp
CAAGAGGGGCCAGGATAAAAACGTCCTTTGTTCGGTGTCAGGTGCTTCGC
ACACCAATCACGCTGTAGTCTACGCGCTAGCACTTTTTTTTGCTGTACGC
GCATGCTGTAACCCATGAGCAGTCCTCCCTTTGCCCTGCCTCTGCCTCCT
GTGGTCTCCCGTCTTACTTGATCTTCACTTGACCGTTCATGTCACACTTT
CGCCTTCCCGCAACTTTAGGCCGATGAGTTTTGCTGGTTTTGGGACGGCA
AGTCAGCCCCAACAAAATTCCCAAACGCCCAAGCCTTTCAGCTCTTTTGG
AGCCCCTGCTCCTGCGTCCCTATTCGGCACGCCTGCCGCTGCTTCCGCCA
CCGGGGCTTTTGGATCAACAAACGCATTCGGAAGTCAACCACAGCAGCAG
CAGCAGCAACAGCAGCAGCAGCAACAACAACAACAACAGCAGCAGCAGCC
TTCTTTATTTGGTGGTTTTGGCCTTAATGCATCGGGGACGACAACAGGAA
CCGCCTCGCGCCAACCCTTTGGAGCCTCTGCATATGGCAGTACTGGCAGT
ACTACAGCTGGCCTCTTTGGAACGCCCGCCGCGTCATCCAGTCCCTTTGG
AATGACGGCAGGGACATCGGCACAAAAGCCTCCAACCCCTGGCTTTTTTG
GTGGTACCAGTGGGTTTGGCGGCGGGGGAGGGGGATTTGGCGGGATGGGG
GGCGTCGGACGACATCCCGGAGCTGGTCAGGGTCCCAACACTGTGGGCGC
TGGAGCGATGGGAAGCATGGGCGGGATGCCATTCGCTGCCCCCACACCGC
AACAGCAGGAGCAGCAGCGGCAATTGCAGCAGCGACAGTTCTGGGAGCAG
GAGCTAAACATGCTTCGGGAGGCCTACCTGCCTCACGACCAGCCAGCGTC
GCAAGCACTGCAGCAACAGCAACCGCAGCTTGGAATGTTCGCGTCTTCCC
TTCAGCCGCAGCAGCAGCCTTCTCGGGTTGTTGACTACAAATTTGCCTTC
CGCGTGACGGACACGAGCACGGGGGTGCCCAGAGAAGTCGAGTTGAGAGA
TCGAAGCGCAATCGAGGCCAAGCTGAAGGGCCAGCAGGAAGAGATGCGTC
GAGTGCAAGAGCACGTGGAAAGGCTGGGAGGAGGGGTCAAAGCCTTGTAT
AGCCAGGCACGGGCTGCAAAAGAGAGGCTGGCGCGTTGTCGGGATGCGCA
CATGGAGCTCACCAACAGGTTCTTGGCGGTACTGCAGCGCCTGCAAGTCC
TCCGCCAGGTGAACCGTCCCATTTCTCAGGAAGAAAAACAAACGAAAGAC
CGCTTGGAGAGCATGCTAGGACGACTGGAAGGTGCGATTCGGACTTTGAA
CGAAGTTGGCGGCGTGGTGGAGGAGGATGAACTCGATCGAAGGGAGGAGC
CCCGGCAAGAGTTGACATGCGACCTGGCCCGCGAGGACGTTCACCTGTTG
CAACAGGCGTTGGAAAAACAGCAAGGAGGGCTAGATTTCTTGACGACAGC
CTTGGGCAGGGATTGTCAAGGGGTGGAGCTTCTCAAGGAGAAGCTAGACG
AGGTCCGGGCAGGGAGGGGGGGGGTCGTGTAGGCACTTGGAGCGCTAAAG
TTCGTAGAGGACTGCAAATCAACGATGACCACAACACAACCGACGCCGCC
TCCCAACAATCATGTGCTGGCTGGGAAACCCCAATCCTCTTTTGTCGATG
GCCGCGCACTGAACGAAGTTGAGGGCATTTGGGTGCTTCACGCTGCGTTA
TTTCTTTTGCCCGTCCTCCCGACTGTCGAGAAGACATGTAGTCACGGACT
GATATTTCGGAATCTGTCGCCCTTTCATTTGTACTCAGAGGCTGACTTGG
GACTAATTTTGACAGCACGTCTACAAAATACACATATTCAGAACACGGAG
GGCCATTCCATTCCTTTCTACC
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protein sequence of rna2143

>rna2143-protein ID=rna2143-protein|Name=rna2143|organism=Nannochloropsis gaditana|type=polypeptide|length=338bp
MASSTALMEDRMERSPNPGSPPGNSLEGQLESFSLLPHKTEEENEETAQT
ATPGVSDILSVRGETSENTPMGTSGQSKKGIVDMLYNNRPKELETRPRYI
DAHPEARLVLQAFFSAVLAEEPEDVYAFARQYFSQRVKVPKEELLRPLVI
CGPSGVGKGTLMNMLFEEFGGYFGFSVSHTTRAPRPGEVEGVHYNFTSRD
AMEAAIEEGRFLEFARVHTNLYGTSLEAVRQVQRAGKVCVLDIDVQGVIK
VKETDVNPHYVFIAPPSVEHLEARLRGRGTESAKDIETRLGAARAEIEYG
LAKGNFEHVVVNDTLEKAYADLKTTLVGFYSHLAAKTA
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mRNA from alignment at CM002458.1:980434..982190+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2143 ID=rna2143|Name=rna2143|organism=Nannochloropsis gaditana|type=mRNA|length=1757bp|location=Sequence derived from alignment at CM002458.1:980434..982190+ (Nannochloropsis gaditana)
CGTGGGGGATTCTGTTTCTTTTCTACTCCGTGACTTCAATGTAGTCACAG
GTCTTCTAGCATTGTGCCGAGGTTAAATAACGATCATGAAGCAGTTGCTT
TAATTCCTGAGGGATCTAACCGCGACTTCCCCATTTTTTGGGACCAGGTC
CGGGCCTCCTACATCATCACGTCCCTACAAAGACTGTTTTCACTTTAGAC
GGAACGCGAGACCTGGGCGTCCCACTTGACGGTGAACTGTGTGAGAGACG
TTGTCTCTTACCATTTGAGCCCACCTTCCTACTTGTCAAacatggcctcg
tccactgCCCTGAtggaggacaggatggagaggagtcCGAATCCCGGCAG
TCCTCCCGGCAACAGCCTTGAAGGCCAGCTGGAAAGTTTCAGCTTGTTGC
CTCACAAAACGGAAGAAGAGAATGAGGAAACGGCGCAAACTGCTACGCCT
GGGGTAAGCGACATCCTCTCtgtgaggggggagacaagTGAGAACACGCC
AATGGGCACAAGTGGGCAATCGAAGAAGGGGATCGTGGACATGCTGTACA
ACAACAGGCCCAAAGAGTTAGAAACACGGCCTCGTTACATTGATGCACAC
CCGGAAGCCCGACTTGTCCTCCAAGCCTTCTTCAGCGCCGTGTTGGCGGA
GGAGCCCGAGGATGTTTATGCCTTCGCCCGGCAGTACTTCAGCCAACGAG
TGAAGGTCCCGAAAGAAGAACTCTTGCGACCTTTGGTTATATGTGGGCCA
TCGGGGGTAGGGAAAGGGACGCTGATGAACATGCTGTTTGAGGAGTTTGG
AGGCTACTTCGGCTTCTCTGTGTCTCACACGACACGGGCACCGCGACCtg
gagaggtggaaggcgtaCACTACAATTTTACCTCAAGAGATGCCATGGAA
GCGGCcatcgaggaagggcgtTTCCTGGAATTTGCCCGAGTGCACACCAA
TTTGTACGGAACGAGCCTTGAGGCCGTGCGGCAAGTCCAGCGCGCGGGCA
AAGTGTGTGTGCTCGACATCGACGTACAAGGGGTGATAAAGGTAAAGGAA
ACCGACGTGAACCCCCACTACGTGTTCATCGCCCCGCCATCCGTGGAGCA
TTTGGAGGCGAGGCTGCGAGGCCGGGGCACGGAGTCTGCGAAAGACATTG
AGACACGGCTGGGGGCGGCGCGTGCGGAGATCGAGTATGGCCTCGCGAAG
GGAAATTTTGAGCATGTGGTCGTCAATGATACCTTGGAAAAGGCCTATGC
TGACTTGAAAACGACATTGGTTGGATTCTATTCGCATTTGGCGGCTAAGA
CCGcttgaaaagagagaagcgaCGGCGTTATGCAGCGCCACTTTGATGTC
TTCGGTGTCTGACAAGAGTTCAGTTTCTTCATGGAACAAATTCGGGGAAT
ATGGTAAGTGCACGCGTGCCACTATTCATGGTCTCATCCTTTGCAAAGAC
CATCAAATCGTAGTGCCACGAATAGAGAGAAAGACTGCATATTCTCGGGT
GTAGCCCTGCTTTTCGTGAAGAATAGCCTCAGGAATCGCACGTTGTTCAG
TAGATACAGAAATATTTGGTTAGattattttaaaaaagaTCGCTTTAGAT
CTCCGCAAAAGTCAGGTCCGCGGGCTTGCATGTTACAATGGTCGCTTTGG
CTCGACTGGAGAACTAATTAAGTTCAAGGAAAGAAGATCTGGAAGATCTG
GTAGACGAACCAGGCACTACATGGCAATATATAGATTTTAGCATATCTCT
GTCGTCC
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Coding sequence (CDS) from alignment at CM002458.1:980434..982190+

>rna2143 ID=rna2143|Name=rna2143|organism=Nannochloropsis gaditana|type=CDS|length=1017bp|location=Sequence derived from alignment at CM002458.1:980434..982190+ (Nannochloropsis gaditana)
atggcctcgtccactgCCCTGAtggaggacaggatggagaggagtcCGAA
TCCCGGCAGTCCTCCCGGCAACAGCCTTGAAGGCCAGCTGGAAAGTTTCA
GCTTGTTGCCTCACAAAACGGAAGAAGAGAATGAGGAAACGGCGCAAACT
GCTACGCCTGGGGTAAGCGACATCCTCTCtgtgaggggggagacaagTGA
GAACACGCCAATGGGCACAAGTGGGCAATCGAAGAAGGGGATCGTGGACA
TGCTGTACAACAACAGGCCCAAAGAGTTAGAAACACGGCCTCGTTACATT
GATGCACACCCGGAAGCCCGACTTGTCCTCCAAGCCTTCTTCAGCGCCGT
GTTGGCGGAGGAGCCCGAGGATGTTTATGCCTTCGCCCGGCAGTACTTCA
GCCAACGAGTGAAGGTCCCGAAAGAAGAACTCTTGCGACCTTTGGTTATA
TGTGGGCCATCGGGGGTAGGGAAAGGGACGCTGATGAACATGCTGTTTGA
GGAGTTTGGAGGCTACTTCGGCTTCTCTGTGTCTCACACGACACGGGCAC
CGCGACCtggagaggtggaaggcgtaCACTACAATTTTACCTCAAGAGAT
GCCATGGAAGCGGCcatcgaggaagggcgtTTCCTGGAATTTGCCCGAGT
GCACACCAATTTGTACGGAACGAGCCTTGAGGCCGTGCGGCAAGTCCAGC
GCGCGGGCAAAGTGTGTGTGCTCGACATCGACGTACAAGGGGTGATAAAG
GTAAAGGAAACCGACGTGAACCCCCACTACGTGTTCATCGCCCCGCCATC
CGTGGAGCATTTGGAGGCGAGGCTGCGAGGCCGGGGCACGGAGTCTGCGA
AAGACATTGAGACACGGCTGGGGGCGGCGCGTGCGGAGATCGAGTATGGC
CTCGCGAAGGGAAATTTTGAGCATGTGGTCGTCAATGATACCTTGGAAAA
GGCCTATGCTGACTTGAAAACGACATTGGTTGGATTCTATTCGCATTTGG
CGGCTAAGACCGcttga
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Synonyms
Publications