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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100009g23.627.mrna |
| Orig protein id | gnl|cribi|Naga_100009g23.627 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:962607..965056 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2137 ID=rna2137|Name=rna2137|organism=Nannochloropsis gaditana|type=mRNA|length=2207bp
GAGATGGACGTGGAACTCGCTTGTCTTCGACCTCGAATTTCAAGGCCACC
TGAGCGCACCAAACACGCCGTGACAAGCCATTTCCCTCCTTTGGCTTGCT
CATCTAACGTCATACGGTGTAACTCAATTCTTTTGCTCCAAAAATTGTCT
TTGACGAAGTGTCTGTGGTTTTGCGCCATTCAGCCTAGCTAGCATACTCA
ACATTGCCACGTAGAATGAACTTCACTTCTCGCGCTCCTGATCTTGATTA
TTTATCGCGTGCCCATCTTGTAAGAGGCGTTGGCTCCCATTAATTACTTG
TCACTGTCAGCACGCTGCTCAAGCCTGTCATTTCCAGGTGCATCCCATGC
ACTTGATTTCTTTCTGGTGTTGCACTTGTCTTGAGCCGTGTCACGATCTT
TGACTTTTTCATTGAAGCTCACGTTTCCCCCCGTTCGCCCCCCGCGCCCC
CATCACAGGCCACAATATACCACACAATAGCGATACAACAATGAAACGGT
GTCATGGCAGCTGTAATTTGGTCGAGTTGGGCTTGGGCTCCTCCCCGAAG
CCGTCGAAAAAGTTCCATCGGGTGCTCTTGTCGACTTCGGCATCAAGCGA
CCAACTCGCAGAACGTCTGAATGTACCCATGAGCACAAGCACCATTCGAA
CATACACACGTCCGAAAGCTTTTGAACATTTTCTGAAACCACTCACGTTT
CAGCCTTGCCAGCGACTGGAGGCTCTCTCTGGAGATGCCAGTGTCAGTCC
TCAATCCGCCCCGCTACCTAAGCACATCATAACCGTGAAGTTTCCAAAAC
CCTGTGAGGAGGAAGACAATGATGGCAGTGCCACTTGCGAACATTTGAGA
TGTGTGCCTGCATGGGTGGCTCCGCTTGCCTACGACGAGCTTCAAATGGG
CTTTGGGAGGACAATCAGTGGTAACGGCTGCCCGGGCACGTTTTGCGGCA
CCTCCACGACAACTACCGCCGCTACAAGCCTAAGTGGTAGTTACATCGGT
GAGGACGAGCAGCGAGATCGCGAAAATCATTGTTGCATTGATCAGGGAAG
AGGAGCGACGAAGTCTCTTTCGAAGGCAAGGGAGGCGGACATGTTTAATG
ACCTGATCAAGGAGATGCAGCGCCTTTACAATGCGCAGGAGGGCCAGTCC
AAGATAGCATCAATATAAACAGCGTATATCGTGCAAGGCAAATTTTTGTA
TTCTTGAAGCAGTGTGCAGTGTTGGGCCTTGTTTCCCGGAAGGCGAAATT
TCGATTTTAAACCTTTGAAGCAGTAAATGGACTAAATCGCATCTTTTTCG
ATATTAACGGAAAGTGGAGACTAGATCACATGTAAATGCAAGGGCGAGAC
CGCAAACCTTATCTGTGTTGGCTGAGGACACTGAGTACATGCTCCCCCCT
GCCTCGACAGCAGGAATGTGAGATTACGGTGATGCTTAATCAGAGGGCTA
CAATGCCTTAAGCGCTGGCCTCCCGGATCTACATTTGTAGAAGTGGGGAG
ATGTGGCGTGGAACGGGAACAGCTTGTAATAAGCGTCATCATCAGAATCT
TACGTGTTACTCATGAGGAGTCACAAGCTGCTGCGAGACTTATTTGAATT
AGTTTTTATTTGAGATTTGCAGCAAAACACCAGTGACTAAATAAGTGAGG
CCAACGAGAAAATTGTTAGTCGACGAGAGGTGTTTTTCAAAATTGATGAC
GCCTTCAGACTTGAAGTTAGCGGGAAGTGGAGAGACAAGTGTTTGTACAG
TATGCAAGTCATATCGTCCTCTCTTAATCTGCACCTGTATTAAAAGTTTT
CCGAAATGTAACTGCCTCGTGTTGTGTATCAACTCGGGCGTTTCTCCCCG
CAACTGGAAGTTTAAATCTTTTTCCCATTATGTAGCCATTTGCTGAATAA
AAAGCACAGGCTTTTGTGCAGCAGTAAAAACCTAGCTCGAGGGTAGACCT
CCAGTAAATTTCAAAAAAAGTGCAAAGAAAAAAATCTCGTATCAGTTGAA
TATGAGCCTTCAGCAGTTTGCTAGGCAGAGAACTTGCTTAAAAGTGAAAA
GCCTACGGAAAATTTTTCATGGAATGGAGGTACCATTACAAAATTAAAGA
CTGGATATTGTATACTTTTGATAGGGAAGCAAAAAAGAAGACATCACATG
CACATGGCCCCTGCGACTTCTAAGCTCCGAACATATTAGAGAGACTCGGC
ACTTATC back to topprotein sequence of rna2137 >rna2137-protein ID=rna2137-protein|Name=rna2137|organism=Nannochloropsis gaditana|type=polypeptide|length=573bp
MALSASPALLVGLLFLLAVTWKGSAAGAAEVVPDQWREFEVPVVPEDKDY
TQIKLNRLRDEYVAVNRQTDPAITAELLVGDMLESKGYTPEEIYAVQGVV
AVLVNAGVLTVHAEKLEAADLSELTTATSTTGTPKRRLQSNVGCCPCSPD
RHTNPPNLVHTKDEEIKHVAFNLTDDGASPPAHPMNAAPTPDRTDPRACE
RTLLGCEKKSVQLAADRRSMYKSMKAMGQALRRTAAARSYYLFVKDEVHS
FEDFEALSKSEQEATRQELATQLLLTCKEYGLQGVELQEYARALGMEVPD
LTKTSDAELENLGREMAAQHLLENVAKSMGKDLGKEGLVRFRDTFGDAAL
RRIGVEPSPEVYTAFGDFATEASRFITLSRQAMEAQGILEPGATEAYKNA
TAIADRLASTFEGVNVTDVLVTATGLMMDAEPYLTNSIDNPVDDATRQKM
KEPWQIILKLSQFEKAAQQQRKSFTMSLKEDNVLDGILLLHEASGTSVES
PLMQQLDFGRIAEITEDHMLDASELRFLVQRVGALNEIYDVDDFAELMAE
VEDNYRMVHGLPPVREERPSLSE back to topmRNA from alignment at CM002458.1:962607..965056- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2137 ID=rna2137|Name=rna2137|organism=Nannochloropsis gaditana|type=mRNA|length=2450bp|location=Sequence derived from alignment at CM002458.1:962607..965056- (Nannochloropsis gaditana)
CTCCAACGTTGGGCATGGCATTGTCAGCGTCACCTGCCTTGCTGGTTGGA
TTGCTTTTTCTGCTTGCCGTGACATGGAAGGGCTCGGCGGCAGGAGCGGC
AGAGGTCGTACCCGACCAGTGGCGCGAGTTTGAGGTACCTGTCGTGCCGG
AAGACAAGGTAAGGACACACAACTCAATACATCTGGTCGGTTTCCTGCCC
ATCAATATTTCTGGGCAAGCCGGGGACATTATGCGACAAAAACGAGACAG
GGGAAAGGGTTTTACGGGTCGGCATTCCTCTGAAACATAATCCCACTACC
TGTTTTGCGTAGTACAAGAGCCTCAGCCATGATGTGCTTTGTCCGCCTTT
CATGAACATGTGTACCTTTTATCTCCCCAGGACTACACACAAATCAAGTT
AAACCGACTGCGCGACGAATATGTAGCCGTGAATCGACAAACAGACCCTG
CCATCACTGCCGAGCTCCTGGTAGGAGACATGCTGGAGAGCAAGGGATAT
ACCCCCGAGGAAATTTATGCGGTGCAAGGGGTGGTGGCGGTATTGGTTAA
TGCCGGTGTTCTAACGGTCCATGCCGAGAAACTTGAGGCTGCCGACCTGT
CCGAGCTGACCACGGCCACAAGCACCACGGGAACTCCTAAGCGCCGGCTT
CAAAGCAACGTCGGTTGCTGCCCCTGTAGCCCGGATCGCCACACAAATCC
TCCAAACTTGGTTCACACGAAAGACGAGGAAATCAAGCACGTCGCTTTTA
ACTTGACTGACGACGGCGCTAGCCCGCCTGCCCACCCCATGAACGCGGCT
CCCACGCCGGACAGGACAGACCCCAGGGCTTGCGAACGGACGCTGTTGGG
TTGTGAAAAGAAAAGCGTGCAACTAGCGGCGGATCGGCGTTCGATGTATA
AGTCTATGAAAGCCATGGGGCAGGCTCTCCGACGCACTGCAGCTGCTCGT
TCCTATTACTTGTTCGTCAAGGACGAAGTTCACAGTTTTGAAGACTTTGA
GGCGTTGAGCAAGTCGGAGCAGGAGGCGACACGACAAGAACTGGCGACCC
AGCTACTGTTGACATGCAAAGAATACGGACTGCAGGGGGTCGAGCTGCAG
GAATATGCGCGTGCCTTGGGCATGGAGGTGCCTGACTTGACCAAAACCTC
TGACGCGGAGCTGGAGAACTTAGGAAGAGAGATGGCGGCACAACACCTGC
TTGAAAATGTCGCAAAATCCATGGGGAAGGACCTGGGAAAAGAGGGCTTG
GTGCGATTTCGGGACACGTTCGGGGACGCCGCCCTGCGTCGTATCGGTGT
GGAGCCGTCCCCTGAGGTGTACACCGCCTTCGGAGACTTTGCCACAGAAG
CGTCGCGCTTCATCACTTTATCAAGACAAGCAATGGAGGCTCAAGGAATT
CTAGAACCCGGAGCGACTGAGGCGTACAAGAATGCGACAGCTATCGCCGA
CAGATTGGCATCTACGTTTGAAGGGGTGAATGTGACGGACGTGCTCGTCA
CGGCGACAGGGCTGATGATGGATGCGGAGCCCTATCTGACGAATTCGATT
GACAACCCCGTGGACGACGCTACCCGACAAAAGATGAAAGAGCCTTGGCA
AATAATCCTGAAACTAAGCCAATTTGAGAAAGCCGCGCAGCAGCAGCGCA
AAAGCTTTACCATGAGTCTGAAAGAAGACAATGTACTTGATGGAATCCTC
TTGCTGCATGAAGCCAGCGGCACCAGTGTGGAAAGCCCACTAATGCAACA
GCTGGATTTTGGGAGAATCGCCGAGATTACAGAAGGTAAGAGCCCGGTTA
AGATGCGAAAAAAGTAGCGTGGGGAAGTAGGCGTTGAAGTTATGATTATG
CCGAGCTAAAAAAAACAAGGTTGGGAACAACCAAGTCACTTTATGAATAA
TTTGAAGTCGATGTCTGTGCAATTCTGCACGTGGATTTCTCACTTTAAAA
TCATCCAATCTCTTTTAAACCAGATCATATGCTCGACGCGTCCGAATTGA
GATTCCTTGTCCAGAGAGTGGGCGCCTTAAATGAAATTTACGATGTAGAC
GATTTCGCAGAGTTGATGGCCGAGGTTGAAGATAACTACCGTATGGTGCA
CGGGCTGCCACCAGTCAGAGAGGAACGGCCGTCTCTTTCGGAATAGAAGG
CATTGCTGCATACAAGCGCAAAATTAATTGTATAAAATGCCCAAGTTCAG
TAGTGACAAGTGTGGCAAAAGCTCTCTAGAGTCGGGGAGTCACAGAAAAG
CTCGTAAGGTGCACGAGTACATCACGGGATGTGTAGAGTGTGACCGGCAT
CGTTTCCGCAAAACACGATGGCAAGAAGGGCGTCATGAGAAATATTCCAA
AACAAAATCCTTAAGGGTGCGCGAAAAACGAGCCCTATCTTACTTTTCTT
TACCACCCTGCGCGGGAAAATATCCCCAATGCTTCTCCCACGTCGACACT
back to topCoding sequence (CDS) from alignment at CM002458.1:962607..965056- >rna2137 ID=rna2137|Name=rna2137|organism=Nannochloropsis gaditana|type=CDS|length=5166bp|location=Sequence derived from alignment at CM002458.1:962607..965056- (Nannochloropsis gaditana)
ATCATATGCTCGACGCGTCCGAATTGAGATTCCTTGTCCAGAGAGTGGGC
GCCTTAAATGAAATTTACGATGTAGACGATTTCGCAGAGTTGATGGCCGA
GGTTGAAGATAACTACCGTATGGTGCACGGGCTGCCACCAGTCAGAGAGG
AACGGCCGTCTCTTTCGGAATAGGACTACACACAAATCAAGTTAAACCGA
CTGCGCGACGAATATGTAGCCGTGAATCGACAAACAGACCCTGCCATCAC
TGCCGAGCTCCTGGTAGGAGACATGCTGGAGAGCAAGGGATATACCCCCG
AGGAAATTTATGCGGTGCAAGGGGTGGTGGCGGTATTGGTTAATGCCGGT
GTTCTAACGGTCCATGCCGAGAAACTTGAGGCTGCCGACCTGTCCGAGCT
GACCACGGCCACAAGCACCACGGGAACTCCTAAGCGCCGGCTTCAAAGCA
ACGTCGGTTGCTGCCCCTGTAGCCCGGATCGCCACACAAATCCTCCAAAC
TTGGTTCACACGAAAGACGAGGAAATCAAGCACGTCGCTTTTAACTTGAC
TGACGACGGCGCTAGCCCGCCTGCCCACCCCATGAACGCGGCTCCCACGC
CGGACAGGACAGACCCCAGGGCTTGCGAACGGACGCTGTTGGGTTGTGAA
AAGAAAAGCGTGCAACTAGCGGCGGATCGGCGTTCGATGTATAAGTCTAT
GAAAGCCATGGGGCAGGCTCTCCGACGCACTGCAGCTGCTCGTTCCTATT
ACTTGTTCGTCAAGGACGAAGTTCACAGTTTTGAAGACTTTGAGGCGTTG
AGCAAGTCGGAGCAGGAGGCGACACGACAAGAACTGGCGACCCAGCTACT
GTTGACATGCAAAGAATACGGACTGCAGGGGGTCGAGCTGCAGGAATATG
CGCGTGCCTTGGGCATGGAGGTGCCTGACTTGACCAAAACCTCTGACGCG
GAGCTGGAGAACTTAGGAAGAGAGATGGCGGCACAACACCTGCTTGAAAA
TGTCGCAAAATCCATGGGGAAGGACCTGGGAAAAGAGGGCTTGGTGCGAT
TTCGGGACACGTTCGGGGACGCCGCCCTGCGTCGTATCGGTGTGGAGCCG
TCCCCTGAGGTGTACACCGCCTTCGGAGACTTTGCCACAGAAGCGTCGCG
CTTCATCACTTTATCAAGACAAGCAATGGAGGCTCAAGGAATTCTAGAAC
CCGGAGCGACTGAGGCGTACAAGAATGCGACAGCTATCGCCGACAGATTG
GCATCTACGTTTGAAGGGGTGAATGTGACGGACGTGCTCGTCACGGCGAC
AGGGCTGATGATGGATGCGGAGCCCTATCTGACGAATTCGATTGACAACC
CCGTGGACGACGCTACCCGACAAAAGATGAAAGAGCCTTGGCAAATAATC
CTGAAACTAAGCCAATTTGAGAAAGCCGCGCAGCAGCAGCGCAAAAGCTT
TACCATGAGTCTGAAAGAAGACAATGTACTTGATGGAATCCTCTTGCTGC
ATGAAGCCAGCGGCACCAGTGTGGAAAGCCCACTAATGCAACAGCTGGAT
TTTGGGAGAATCGCCGAGATTACAGAAGATGGCATTGTCAGCGTCACCTG
CCTTGCTGGTTGGATTGCTTTTTCTGCTTGCCGTGACATGGAAGGGCTCG
GCGGCAGGAGCGGCAGAGGTCGTACCCGACCAGTGGCGCGAGTTTGAGGT
ACCTGTCGTGCCGGAAGACAAGATCATATGCTCGACGCGTCCGAATTGAG
ATTCCTTGTCCAGAGAGTGGGCGCCTTAAATGAAATTTACGATGTAGACG
ATTTCGCAGAGTTGATGGCCGAGGTTGAAGATAACTACCGTATGGTGCAC
GGGCTGCCACCAGTCAGAGAGGAACGGCCGTCTCTTTCGGAATAGGACTA
CACACAAATCAAGTTAAACCGACTGCGCGACGAATATGTAGCCGTGAATC
GACAAACAGACCCTGCCATCACTGCCGAGCTCCTGGTAGGAGACATGCTG
GAGAGCAAGGGATATACCCCCGAGGAAATTTATGCGGTGCAAGGGGTGGT
GGCGGTATTGGTTAATGCCGGTGTTCTAACGGTCCATGCCGAGAAACTTG
AGGCTGCCGACCTGTCCGAGCTGACCACGGCCACAAGCACCACGGGAACT
CCTAAGCGCCGGCTTCAAAGCAACGTCGGTTGCTGCCCCTGTAGCCCGGA
TCGCCACACAAATCCTCCAAACTTGGTTCACACGAAAGACGAGGAAATCA
AGCACGTCGCTTTTAACTTGACTGACGACGGCGCTAGCCCGCCTGCCCAC
CCCATGAACGCGGCTCCCACGCCGGACAGGACAGACCCCAGGGCTTGCGA
ACGGACGCTGTTGGGTTGTGAAAAGAAAAGCGTGCAACTAGCGGCGGATC
GGCGTTCGATGTATAAGTCTATGAAAGCCATGGGGCAGGCTCTCCGACGC
ACTGCAGCTGCTCGTTCCTATTACTTGTTCGTCAAGGACGAAGTTCACAG
TTTTGAAGACTTTGAGGCGTTGAGCAAGTCGGAGCAGGAGGCGACACGAC
AAGAACTGGCGACCCAGCTACTGTTGACATGCAAAGAATACGGACTGCAG
GGGGTCGAGCTGCAGGAATATGCGCGTGCCTTGGGCATGGAGGTGCCTGA
CTTGACCAAAACCTCTGACGCGGAGCTGGAGAACTTAGGAAGAGAGATGG
CGGCACAACACCTGCTTGAAAATGTCGCAAAATCCATGGGGAAGGACCTG
GGAAAAGAGGGCTTGGTGCGATTTCGGGACACGTTCGGGGACGCCGCCCT
GCGTCGTATCGGTGTGGAGCCGTCCCCTGAGGTGTACACCGCCTTCGGAG
ACTTTGCCACAGAAGCGTCGCGCTTCATCACTTTATCAAGACAAGCAATG
GAGGCTCAAGGAATTCTAGAACCCGGAGCGACTGAGGCGTACAAGAATGC
GACAGCTATCGCCGACAGATTGGCATCTACGTTTGAAGGGGTGAATGTGA
CGGACGTGCTCGTCACGGCGACAGGGCTGATGATGGATGCGGAGCCCTAT
CTGACGAATTCGATTGACAACCCCGTGGACGACGCTACCCGACAAAAGAT
GAAAGAGCCTTGGCAAATAATCCTGAAACTAAGCCAATTTGAGAAAGCCG
CGCAGCAGCAGCGCAAAAGCTTTACCATGAGTCTGAAAGAAGACAATGTA
CTTGATGGAATCCTCTTGCTGCATGAAGCCAGCGGCACCAGTGTGGAAAG
CCCACTAATGCAACAGCTGGATTTTGGGAGAATCGCCGAGATTACAGAAG
ATGGCATTGTCAGCGTCACCTGCCTTGCTGGTTGGATTGCTTTTTCTGCT
TGCCGTGACATGGAAGGGCTCGGCGGCAGGAGCGGCAGAGGTCGTACCCG
ACCAGTGGCGCGAGTTTGAGGTACCTGTCGTGCCGGAAGACAAGATCATA
TGCTCGACGCGTCCGAATTGAGATTCCTTGTCCAGAGAGTGGGCGCCTTA
AATGAAATTTACGATGTAGACGATTTCGCAGAGTTGATGGCCGAGGTTGA
AGATAACTACCGTATGGTGCACGGGCTGCCACCAGTCAGAGAGGAACGGC
CGTCTCTTTCGGAATAGGACTACACACAAATCAAGTTAAACCGACTGCGC
GACGAATATGTAGCCGTGAATCGACAAACAGACCCTGCCATCACTGCCGA
GCTCCTGGTAGGAGACATGCTGGAGAGCAAGGGATATACCCCCGAGGAAA
TTTATGCGGTGCAAGGGGTGGTGGCGGTATTGGTTAATGCCGGTGTTCTA
ACGGTCCATGCCGAGAAACTTGAGGCTGCCGACCTGTCCGAGCTGACCAC
GGCCACAAGCACCACGGGAACTCCTAAGCGCCGGCTTCAAAGCAACGTCG
GTTGCTGCCCCTGTAGCCCGGATCGCCACACAAATCCTCCAAACTTGGTT
CACACGAAAGACGAGGAAATCAAGCACGTCGCTTTTAACTTGACTGACGA
CGGCGCTAGCCCGCCTGCCCACCCCATGAACGCGGCTCCCACGCCGGACA
GGACAGACCCCAGGGCTTGCGAACGGACGCTGTTGGGTTGTGAAAAGAAA
AGCGTGCAACTAGCGGCGGATCGGCGTTCGATGTATAAGTCTATGAAAGC
CATGGGGCAGGCTCTCCGACGCACTGCAGCTGCTCGTTCCTATTACTTGT
TCGTCAAGGACGAAGTTCACAGTTTTGAAGACTTTGAGGCGTTGAGCAAG
TCGGAGCAGGAGGCGACACGACAAGAACTGGCGACCCAGCTACTGTTGAC
ATGCAAAGAATACGGACTGCAGGGGGTCGAGCTGCAGGAATATGCGCGTG
CCTTGGGCATGGAGGTGCCTGACTTGACCAAAACCTCTGACGCGGAGCTG
GAGAACTTAGGAAGAGAGATGGCGGCACAACACCTGCTTGAAAATGTCGC
AAAATCCATGGGGAAGGACCTGGGAAAAGAGGGCTTGGTGCGATTTCGGG
ACACGTTCGGGGACGCCGCCCTGCGTCGTATCGGTGTGGAGCCGTCCCCT
GAGGTGTACACCGCCTTCGGAGACTTTGCCACAGAAGCGTCGCGCTTCAT
CACTTTATCAAGACAAGCAATGGAGGCTCAAGGAATTCTAGAACCCGGAG
CGACTGAGGCGTACAAGAATGCGACAGCTATCGCCGACAGATTGGCATCT
ACGTTTGAAGGGGTGAATGTGACGGACGTGCTCGTCACGGCGACAGGGCT
GATGATGGATGCGGAGCCCTATCTGACGAATTCGATTGACAACCCCGTGG
ACGACGCTACCCGACAAAAGATGAAAGAGCCTTGGCAAATAATCCTGAAA
CTAAGCCAATTTGAGAAAGCCGCGCAGCAGCAGCGCAAAAGCTTTACCAT
GAGTCTGAAAGAAGACAATGTACTTGATGGAATCCTCTTGCTGCATGAAG
CCAGCGGCACCAGTGTGGAAAGCCCACTAATGCAACAGCTGGATTTTGGG
AGAATCGCCGAGATTACAGAAGATGGCATTGTCAGCGTCACCTGCCTTGC
TGGTTGGATTGCTTTTTCTGCTTGCCGTGACATGGAAGGGCTCGGCGGCA
GGAGCGGCAGAGGTCGTACCCGACCAGTGGCGCGAGTTTGAGGTACCTGT
CGTGCCGGAAGACAAG back to top
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