rna2136, rna2136 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2136
Unique Name	rna2136
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2812
Alignment location	CM002458.1:960146..962352 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100009g24.582.mrna
Orig protein id	gnl\|cribi\|Naga_100009g24.582
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:960146..962352 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g24	gene2040	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28539.1	cds2128	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2136	rna2136-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:960146..962352-
coding sequence from alignment at CM002458.1:960146..962352-

mRNA sequence

>rna2136 ID=rna2136|Name=rna2136|organism=Nannochloropsis gaditana|type=mRNA|length=2812bp
CGCCCTGCTTCCCGACCGGTCCTGGTGCTGATACCGTTCACATCAAACTT
AATTGACGACGCACCGTCACTGGACGATTTTGGACCAACATATGACTCTA
TGCACAGACAGACCTTGGGGGCAGCCCGCAGAGCTCTTGGGGTTTCCCGC
CCCGGCGGGCAGCCCAGCACGCTTGAAGCTTCCCGATCGTCAACCTTCAG
GCAACATGGTTACCAATTTTAAGAAAAAAATAAGAAGGAGTCTGCAGCTC
CTCCTGCTTATACCTCCCTTATATAGGGTTAACGGGTGGGTATCTGGCAG
CATTCAAAGCCTAGAACGGCATCACCACCACGCGCCGCGAAGAAGACAGC
CGTCTGCCAACAAGGTCCTTTCCTCTCCGCCAACCTTGCACAATATAAAG
GCAGCTGTTACACCCGCTCCCACGGATGGCAGTCGTAATGAATATGAAGA
TGTCCGGGACGATGAAGACGCGACTGAGCTCCAAAAACAAATAACAATAG
AACTGACCGACTGGGTCTCGGAGGGGGAGGAGCTGTGGCAGGAAGCATTC
TCAACGCCGCGCGATGAGAAGAGACACAGAGGTAAATCAGAGCCAGGCGA
TAATGGCATGGGGCACTCCACTAGACCATCAAATGGTCTTTTTACAACGG
TATTGGGTTTTCGCAGTGCGGCGCATGACGACCTTTCCCACGGGCAAGCA
GCTCATCAACTTCCTGTAAGGCTCCAGCGCGAGGTGAATTTGGTGTGGTA
TGAGATCCAGCGAGGGGATCGGATGGCGTATCTACGTGCAGAAGAGCGAG
ATAGGGTGAAACAGCAGCTCGTGGTGCTAGCCTTTTTTCGTACCTTGTTT
GATCACCCGTCCCAGGTGTTGAACACCCAGAGCGCCGAGGCCTGCTTCCA
GCAAGCGGACGTGAATCGAGACGGACAACTCAGTTTCGAGGAGTTTCTCC
GATGGTACACAGCCAGTTACGATGATCAGGGACCAAAATCGCCGGAAGGA
AGAGACAGCAGCGAGGAGGAGGGCGGCAGCACTGAGGAGACGGCTGGGGC
ACTTGTCCCGTTTGGGCAGGGAGCTGCAGCCAGAAGGTTGGAGGGCCTGT
CGATGACAGAGGTGCTGCGCACGTTTTTGGCACAAAAAGAGCATGTGTCC
GAAGCAGGACCCGAGGCGGACAACAAAAGCGAGGAGCAAGTCCTCGCGGA
CCTGGACCGTGTGATCGAGACCACGCAAGTGCTCCTGGAGCTGGAGGCGG
ACGTGGAAACCGTCCTCGCCGCACTCGCCACCTATTTCCTGGGCCTGGAT
GCAGAAGACTCGGAGGACCTGACCGAGAAACTGGCGGTAGTACGCTCTCA
ATGTGGACCGGTCGTGCATCAGATCGTCCGGGACAGCACCCGTCTAGGAG
GCCTCTTTCAGGCGTCGCCCGAGACGCGGCAATATCGCCGCAACCCGCGC
GAGTACTACACGATGCTCGACTTGGATCATCGCAACGCCCAGCTGGTCCG
GCAGCACCTGGTGAACGAGAACAGCGACGCCAGGGCTTTTGTGGTCCACA
TGGCCGGCCTTCTCCACGCGCTACGGAACCAATACCGGATGCCTGTGCAC
GCCCGTCACGTCCTTGCCCTGGAGAGCCTTCAGCTGTACGTCCCTGTCGC
CTCCGCCCTTGGTCTGGGCTCCCGCTTGAAAGAGATGGAGGAACTCAGCT
ACCGGGCTCTCTTCCCTGAATCGTACGAAAGCTTCGCCTCTTGGCACAAA
AACTTTGCGGACTTGGGTCAAGTAGCCTTGGTGATTGCGAAAAAAAAAAT
CGCGGCCAGGATCGAAGCCGACGTGCAAGGTCTCCGCCGTTTCTTGGAGG
GATACGAGATCCACGGTCGGGTCAAATCGGTCGTTTCCGCGTTCAAGAAG
GTCTACCGGAAGGACAAGCTGCCCGAGGAGCTCCATGACATGCTGGGCCT
GCGCGTCATCCTCTTCCCCTCCTTGGGCACCGGACCCCGTGGGAGGTTCC
TTCGCGGCCAGCTCGCTCGAAAAAAGAACGCGTTGCCTGCCTGGTCGACG
GCGACTACGGTGGCTCTCGGAGATGGCGCGTCCGAGGGGTACGGCGAGCG
TGGCAATGTGGGTGGCCGGAACTCGGATGGCACACAGAGGGCTCTGGGTC
CCGCGGGAGCGACCCCTGTCTTCTCCTCCCCCTTGCCGTCAGCAAGCCGC
CTCGAGCTGGAAGCCTGGCTGTGTCATCAAGTGCATGCCGTGGTCGCCTC
TCTGTGGGAGGAGGTGCCCGGGAGGTACAAAAACTATGTGGATGCACCCA
AGCCGAACGGGTACCGGTCCCTCCACACGGGCGTCTATCTGATGGAGGGG
GGGGGGACGGCCGAGATTCAGATTCGAACAGCGGGCATGCATGCCGAAGC
GGAGGATGGAATTGCCAGCCACGCGTTGTACAAAGCAGAACTGCAGACCA
GGGACCAAGTCGAAGACTTCCAGGAGCAGTTGGGGGCAGCCCGCGCCGCT
ACGCCCGCCGGGGAGGCGGCCGCCAAGACGGAGACAGGGAAGCCGGCCCT
GTTGCTCCCCGCCTCCGCTAGCTCGGCGTCATGGGCAGTAACGGTGGCAT
TACCTGGTGAGGCGTCCTCAGGGGGCTGAAGCCATTTATGAAGCCCGGCG
GAGGCTGGGGCTGTTCGAGGTCCTCGGCTTCAAAGATGTATATTTCATTG
TGTGTACAAAGCGTGATGCGTGCAGTTTTTGAGTCTGTCATGATTGGTGC
AACGATGAAAGAGCCCTTTGAAAATAGAAAAAAATATTGAGCCAATGGAG
CCTCAAATGACT

protein sequence of rna2136

>rna2136-protein ID=rna2136-protein|Name=rna2136|organism=Nannochloropsis gaditana|type=polypeptide|length=225bp
MKRCHGSCNLVELGLGSSPKPSKKFHRVLLSTSASSDQLAERLNVPMSTS
TIRTYTRPKAFEHFLKPLTFQPCQRLEALSGDASVSPQSAPLPKHIITVK
FPKPCEEEDNDGSATCEHLRCVPAWVAPLAYDELQMGFGRTISGNGCPGT
FCGTSTTTTAATSLSGSYIGEDEQRDRENHCCIDQGRGATKSLSKAREAD
MFNDLIKEMQRLYNAQEGQSKIASI

mRNA from alignment at CM002458.1:960146..962352-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2136 ID=rna2136|Name=rna2136|organism=Nannochloropsis gaditana|type=mRNA|length=2207bp|location=Sequence derived from alignment at CM002458.1:960146..962352- (Nannochloropsis gaditana)
GAGATGGACGTGGAACTCGCTTGTCTTCGACCTCGAATTTCAAGGCCACC
TGAGCGCACCAAACACGCCGTGACAAGCCATTTCCCTCCTTTGGCTTGCT
CATCTAACGTCATACGGTGTAACTCAATTCTTTTGCTCCAAAAATTGTCT
TTGACGAAGTGTCTGTGGTTTTGCGCCATTCAGCCTAGCTAGCATACTCA
ACATTGCCACGTAGAATGAACTTCACTTCTCGCGCTCCTGATCTTGATTA
TTTATCGCGTGCCCATCTTGTAAGAGGCGTTGGCTCCCATTAATTACTTG
TCACTGTCAGCACGCTGCTCAAGCCTGTCATTTCCAGGTGCATCCCATGC
ACTTGATTTCTTTCTGGTGTTGCACTTGTCTTGAGCCGTGTCACGATCTT
TGACTTTTTCATTGAAGCTCACGTTTCCCCCCGTTCGCCCCCCGCGCCCC
CATCACAGGCCACAATATACCACACAATAGCGATACAACAATGAAACGGT
GTCATGGCAGCTGTAATTTGGTCGAGTTGGGCTTGGGCTCCTCCCCGAAG
CCGTCGAAAAAGTTCCATCGGGTGCTCTTGTCGACTTCGGCATCAAGCGA
CCAACTCGCAGAACGTCTGAATGTACCCATGAGCACAAGCACCATTCGAA
CATACACACGTCCGAAAGCTTTTGAACATTTTCTGAAACCACTCACGTTT
CAGCCTTGCCAGCGACTGGAGGCTCTCTCTGGAGATGCCAGTGTCAGTCC
TCAATCCGCCCCGCTACCTAAGCACATCATAACCGTGAAGTTTCCAAAAC
CCTGTGAGGAGGAAGACAATGATGGCAGTGCCACTTGCGAACATTTGAGA
TGTGTGCCTGCATGGGTGGCTCCGCTTGCCTACGACGAGCTTCAAATGGG
CTTTGGGAGGACAATCAGTGGTAACGGCTGCCCGGGCACGTTTTGCGGCA
CCTCCACGACAACTACCGCCGCTACAAGCCTAAGTGGTAGTTACATCGGT
GAGGACGAGCAGCGAGATCGCGAAAATCATTGTTGCATTGATCAGGGAAG
AGGAGCGACGAAGTCTCTTTCGAAGGCAAGGGAGGCGGACATGTTTAATG
ACCTGATCAAGGAGATGCAGCGCCTTTACAATGCGCAGGAGGGCCAGTCC
AAGATAGCATCAATATAAACAGCGTATATCGTGCAAGGCAAATTTTTGTA
TTCTTGAAGCAGTGTGCAGTGTTGGGCCTTGTTTCCCGGAAGGCGAAATT
TCGATTTTAAACCTTTGAAGCAGTAAATGGACTAAATCGCATCTTTTTCG
ATATTAACGGAAAGTGGAGACTAGATCACATGTAAATGCAAGGGCGAGAC
CGCAAACCTTATCTGTGTTGGCTGAGGACACTGAGTACATGCTCCCCCCT
GCCTCGACAGCAGGAATGTGAGATTACGGTGATGCTTAATCAGAGGGCTA
CAATGCCTTAAGCGCTGGCCTCCCGGATCTACATTTGTAGAAGTGGGGAG
ATGTGGCGTGGAACGGGAACAGCTTGTAATAAGCGTCATCATCAGAATCT
TACGTGTTACTCATGAGGAGTCACAAGCTGCTGCGAGACTTATTTGAATT
AGTTTTTATTTGAGATTTGCAGCAAAACACCAGTGACTAAATAAGTGAGG
CCAACGAGAAAATTGTTAGTCGACGAGAGGTGTTTTTCAAAATTGATGAC
GCCTTCAGACTTGAAGTTAGCGGGAAGTGGAGAGACAAGTGTTTGTACAG
TATGCAAGTCATATCGTCCTCTCTTAATCTGCACCTGTATTAAAAGTTTT
CCGAAATGTAACTGCCTCGTGTTGTGTATCAACTCGGGCGTTTCTCCCCG
CAACTGGAAGTTTAAATCTTTTTCCCATTATGTAGCCATTTGCTGAATAA
AAAGCACAGGCTTTTGTGCAGCAGTAAAAACCTAGCTCGAGGGTAGACCT
CCAGTAAATTTCAAAAAAAGTGCAAAGAAAAAAATCTCGTATCAGTTGAA
TATGAGCCTTCAGCAGTTTGCTAGGCAGAGAACTTGCTTAAAAGTGAAAA
GCCTACGGAAAATTTTTCATGGAATGGAGGTACCATTACAAAATTAAAGA
CTGGATATTGTATACTTTTGATAGGGAAGCAAAAAAGAAGACATCACATG
CACATGGCCCCTGCGACTTCTAAGCTCCGAACATATTAGAGAGACTCGGC
ACTTATC

Coding sequence (CDS) from alignment at CM002458.1:960146..962352-

>rna2136 ID=rna2136|Name=rna2136|organism=Nannochloropsis gaditana|type=CDS|length=678bp|location=Sequence derived from alignment at CM002458.1:960146..962352- (Nannochloropsis gaditana)
ATGAAACGGTGTCATGGCAGCTGTAATTTGGTCGAGTTGGGCTTGGGCTC
CTCCCCGAAGCCGTCGAAAAAGTTCCATCGGGTGCTCTTGTCGACTTCGG
CATCAAGCGACCAACTCGCAGAACGTCTGAATGTACCCATGAGCACAAGC
ACCATTCGAACATACACACGTCCGAAAGCTTTTGAACATTTTCTGAAACC
ACTCACGTTTCAGCCTTGCCAGCGACTGGAGGCTCTCTCTGGAGATGCCA
GTGTCAGTCCTCAATCCGCCCCGCTACCTAAGCACATCATAACCGTGAAG
TTTCCAAAACCCTGTGAGGAGGAAGACAATGATGGCAGTGCCACTTGCGA
ACATTTGAGATGTGTGCCTGCATGGGTGGCTCCGCTTGCCTACGACGAGC
TTCAAATGGGCTTTGGGAGGACAATCAGTGGTAACGGCTGCCCGGGCACG
TTTTGCGGCACCTCCACGACAACTACCGCCGCTACAAGCCTAAGTGGTAG
TTACATCGGTGAGGACGAGCAGCGAGATCGCGAAAATCATTGTTGCATTG
ATCAGGGAAGAGGAGCGACGAAGTCTCTTTCGAAGGCAAGGGAGGCGGAC
ATGTTTAATGACCTGATCAAGGAGATGCAGCGCCTTTACAATGCGCAGGA
GGGCCAGTCCAAGATAGCATCAATATAA

Synonyms

Publications