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Properties
| Property Name | Value |
|---|
| Product | vacuolar protein sorting-associated protein 33-like protein |
| Orig transcript id | gnl|cribi|Naga_100009g54.601.mrna |
| Orig protein id | gnl|cribi|Naga_100009g54.601 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:897747..901812 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2105 ID=rna2105|Name=rna2105|organism=Nannochloropsis gaditana|type=mRNA|length=1785bp
TTCATTCATTTTACAATTATAAATCTAGATCATCGTCTATGTCTTCATCA
TACTCCTCCTCTTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCCCTCC
AGCTCCCCTTTGTTTGATCTTCCTGTCCCAAGCATACGCTTGAGAAGTCT
GTTGGTGGTCCAATATTTTTTGGCGCTCATGAGGTAGAATTGTCTGGTCC
CTCATGGCACGCTCTTGTTCGTTGAGAGAGAGGCGAAAAGGCAGGCTCTC
CACAAAAGCTGCTCCTTTTTTCTTGCTGCCGCTCACGCCGTCTATACTAT
CTACCTGCGCACGTGATGAATCAACTAATGCTTTGCTTATTTGAGGTCCA
GGATATACAGTACGTGAAGGTTCAGGGCTGAACGACAAAGTCTTTCGCTT
GGCATCGAAGCTGTAAGACTCCCATTCCTCATGGACCTTCCCAGAGGCAC
TTTTCCTTATCACCTGGCATCGACCCGAGGCCTCGTCGTCCGGGAAGAGG
CAAATATTTGTGGTAGCTAGATCCTCCAAGGCTATCATCCACTCTCTAGA
TAACAGGGACTCTCCGCCCGTGCCACAGGGCTCCGGATGGAGCACGGTCA
AGATTGGAGAGACAAAGCGGGTACCCCCAGCATGCAGGAGGCTTCGCAAT
GTATTTAAGAGGGCTGGCGTGCCATCGAGCCTGTGAGCCAGCATATTCAG
GGAATCGATGCCTACCACAATGGCCTTCGAAGAGAAGTCGTTCGATGCTG
TGTCTCCCTCCTCCTCTCCGTCCTCCTCGTACTTCCTAGTACCCCCTTGG
AGGGTATTTGACACGGGTTCAGACGACGCGGAAGGCAACGCTCTTCGAAT
GGCGTCCACGAACTCTTCTCCAGATGAAAAATTCAAAGGTGGCACAAATC
TTGACTCGGCATCCTTTGTGGTCATGGAAAAGCTATCCAGGAACGCTAGT
ATTTTTTCCTCGTCCCGATCATTGTCCAGCAAAATGGGAGGAGTATCCTC
CAAGCCCACCAGAACAAGGCCGTGATACCGTAGCGAGTCTCTCAATCTCG
CAAGCAAATGATTGTAGACAATCCTGGTGTGTCCAGCGAAAACTTGGGCT
TTATATGCAGACGAGGATGGTGGGGCAGTCGGTCGAGCGTGGACTATGAC
CAAAGACGAGCCAGAAGATGATAAATGACCACCTTTGCTCACAACGGCGC
GCTCCACGGCTGACTGTATCGAGGAAGAAGACAAATATGCCATTCTTACG
ACTTTGTGCCTGTTCGATGGTAGAAAGAAAGGTTTGAAAGCCGGTAAAAT
AATCTTTAACCAAGGTCACATGAAGGGGAGGCAGTAAAGCCGGATCCCGG
GATGAGTGCGTGTTTCGATTCTTTGTAAAAGGAGTGTTTCCTAACGCAAT
AGTATTGTCTGACATTAGAGCAGACGGGGGAGCCCATACGATAGAACCGA
TTACATTCAAAGACATGGTGAGCAAGCACGACAATCGTATGGCTAACCTC
CTGGCGGTGTCCGCCGGAATGCAGCCATGGGCCACCGGTAGCAAGTTTTT
AGCCTAAGCAAGGTTATTGTGAATCATGGGGGTTATCTTATCAGAACATT
GACTTCTGTTAAATTTTCATGGATTCTTTCTTCACCATTGCAGCGGCCTC
GCGGGTACTACGGTACAGGCCTCTGACTCGCCATGACTCAAGCGTTTTAA
TGACTGGAAATTTAGATAGGGAAGAACAGTACAAAAACACCCATTTTACT
TGCGTAATGTTTCACTCGCTCCAAGCTATTTGCCA back to topprotein sequence of rna2105 >rna2105-protein ID=rna2105-protein|Name=rna2105|organism=Nannochloropsis gaditana|type=polypeptide|length=764bp
MAALASGKKPVLGAAPPNTASARTAPSTLEDSAIPLSKLRSQGRKELLDV
LQAARGRKALVLDTALRGLLAHIVPEGTNFLRQHGVVHLCRGLQTDLTFV
TPEGRDDEPDNILYFVRPSLSNMRMLSAQLKKRNGKRQKGGGRKALTRSA
SESGSGGGPYQPKEGRHLLYFVPHKTFLCEQALSDEGVLECFAEVGECHL
DLFPLDTDLVSLEMDTSFKDAYVDGDSTMLTTVARSLQKLEKNFGVIPHV
KAKGTYAAVALQRFFNLKRQQEEEKRGDEFATTPTPSSSHRGTSAPEIDT
LVLLDRAVDLVTPLLTPLTYEGLLNECLGIQHGAIKVDPSLVGDTDDTGG
GRGRVIGRGTTPENTAGGAGKEGKGEPVTVALNSNDSLYAEIRDLHLEVL
GLQLNEKAMEMRQTYARVKEETRDGSLNEIHDVVKSIPALQQKYKGLNLH
INIAEFLKPTTGHVRFQQRWQLERSMLEGETCYEDVEEMVAAYEPVDQVL
RLLALQSLTAGGIKASKYELLKREIIQSYGYEYLFALTNMEQAGLLRKAD
LQLSNVMFGSIGASGFSSTGGSGNAWASLRRLLRLVKENVNTQVPDDIAY
VSSGYAPLSVRLLQLIQKPGWASCSDVFKFLPGPTLECTQTQENTRRGGA
PLSFMQELDRLLGTACSGTDGDIGGRPQPSVTPVTQHLGLSAAETGGKIL
PNGKTVMMVYFIGGVSFMEIAAMRYLSRHKDFPYSIIVCTTKLISGNLFI
ESVFENFRNSLGRS back to topmRNA from alignment at CM002458.1:897747..901812- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna2105 ID=rna2105|Name=rna2105|organism=Nannochloropsis gaditana|type=mRNA|length=4066bp|location=Sequence derived from alignment at CM002458.1:897747..901812- (Nannochloropsis gaditana)
AGTTTTCCTTTTGATGAGAAACAAGCTTTTGTGCCTTAGAGCTTGGGTGC
ATTGGCCAAGAAGCATGATTAATGTCCTGTATTATACATTGAAGCAGGGA
CACGGCTGGCTCCCTTCAGTGATGAGCGGTCAGCGGGCCGACGGGAGGCA
TGAGGAGGTAGAGGAAGGAGGAGTGGAAGCGGAAGGAGTGCGCGACAGGT
CCAACGATAACGATATGGAGCAAACAGGCCCTACTCAAGTGTTGGAAAGT
GTACGCAGCGGTGCTGGAAGCGGGATTGGGGGTCCTGGACAGGGGGAACG
GAATCACGGGCTGGATCCAAGAGAGCTGGCGCCGTTTCTGAACGCCCTGG
ACCAATATCATCCTACGGTACGTTATGGGGGCTGATGGCACTGGGTAGAG
ATATGAGAAGAGTTATGGAAAGAAACTACTCGTGACTCAATGGGTACTTC
TCTGTAATGCCTCTGCCTTGCGATAAAGCCCGGCACCCGTCCTGGACTGG
ACGACTGCCTCGACGAAACACGTGCTTTCATACCGTCACAAAGACGGGGA
AAATGAACGAGATCCATCTTGGGGGCGCTTTGAGTAGATCGTGACAGAAA
GAATTTCTGAAGAAGACGACCAAAGACACTGTTTGTCCATGCTTCTCCTG
GATGGACATGCCTCCCTCACCTTCCTCACTCCCGCTAGATCCCAGAAGAG
GTCACAGCCTATTTTTTGCAACAAGGAGGAGTGACAGTCACGGATTCAAA
AATGTACGTGAGACAAAAGATGCTCGACAAGTCTTGCTTTCGTGGGGTTT
TGTGGCCCCTGCTTGAATGGGAAGGAATGATCCATCCCACGCGCTTTTGT
CTGAGACTCCCCCGTTTCAACCCATCTTCTGATTTTTCGCTTCACAAGCA
CTTGACTTGGTGTCTCTGGCTAAGGATATCTGATCTTAATTATTGTCATT
GCACACTTTTTACGATCAGCAAAAAGCTTGTCTCGCTGGCAGCCGAGAAA
CTTGTGTCGGAGATAGTGCACGACACAACTACCTACAGTCGCATGAAGGA
CCAAGATGGAGATATACTCAAGATGGAGGACTTGAAAGAGAGTTTGGGTA
AATACGGAGTAGAGAAATTTAAGATCAGAGCAACCGAAGAGGAGAAGAAG
GAGGAAGAGGGAGGTAAAGGCGGTGGTGGGGAGGTTGCTTTTGGAGGAGA
AAAAAGTCTTGGCAGTGGAAGGGAAGGACGAGGTGGAGGCGGAGGTCGTC
GGGCACCATCCAGAAACTCATAAAAATAGAAGCTGAACAAGGCTTATGTC
TATGAGGCAAAAGTAATCACGAAAAAAAATTAACGCCTCGCTGTGAGCGG
TACAGGCTGGAATCAGTTGGCCGACACCCCGCCTTCAAATTCTTTTGAGA
GCTAGGCAACATGATCATTAACAAATGAATGTAGACAGTCGTGCATGTTT
TCGGTCTCACCCTTTGCGTGTAGATGTGGTGACCGGCTTGTAAAGGGGAA
ATTGGGACCATAGAAGTGGTATCGACGTACACTGTGTCGTTCCTCTCGCG
AAAGGGCCATATCAGAAGGAATACCTCATCGAGCATTTTACCATGGCTTG
TCGACATTCAGAGAAAGGACCTAAATTTTGATATCTCCCTATTGAAGGCA
TCCCATGGCCGCCCTGGCTTCAGGAAAAAAGCCAGTATTAGGTGCTGCAC
CTCCGAACACTGCTAGCGCCCGCACAGCCCCCTCCACCCTGGAGGACAGC
GCTATTCCTCTTTCTAAACTTCGCAGTCAAGGCCGCAAAGAGCTCCTCGA
CGTGCTGCAAGCGGCGAGAGGTCGGAAGGCGTTGGTGCTGGATACAGCGT
TGCGTGGATTACTGGCTCACATTGTCCCTGAAGGAACTAACTTCCTGCGG
CAGCACGGGGTCGTACACTTATGCCGAGGACTGCAGACTGACCTTACTTT
TGTGACCCCAGAGGGCAGAGACGACGAGCCTGACAATATTTTGTACTTTG
TACGGCCTTCATTGAGTAACATGCGTATGTTGTCGGCGCAGCTCAAAAAG
CGGAATGGCAAGCGTCAGAAGGGTGGGGGACGGAAGGCCTTAACCAGAAG
TGCAAGCGAGAGTGGGTCGGGCGGAGGTCCGTATCAGCCAAAGGAAGGCC
GGCACCTCCTGTACTTCGTCCCGCACAAAACGTTTCTGTGTGAGCAGGCC
TTGTCGGATGAAGGAGTTTTGGAATGCTTCGCGGAGGTAGGGGAGTGTCA
TCTAGATCTCTTTCCTCTCGACACCGACCTTGTCTCCCTGGAAATGGATA
CGTCGTTCAAAGACGCCTACGTGGACGGTGACTCTACCATGCTTACTACC
GTCGCACGATCTCTTCAAAAGCTCGAGAAAAATTTCGGTGTGATCCCCCA
CGTCAAGGCAAAAGGCACCTACGCCGCGGTTGCACTGCAACGGTTCTTTA
ATCTGAAGAGACAGCAAGAAGAAGAGAAGCGAGGAGACGAGTTTGCGACG
ACTCCGACCCCGTCTTCCTCCCACAGGGGTACAAGCGCGCCCGAGATCGA
CACCTTGGTCTTGCTGGACCGGGCCGTGGACCTGGTGACGCCGCTCTTGA
CCCCGCTCACCTACGAGGGCCTTTTGAACGAATGCTTGGGGATCCAGCAC
GGAGCCATCAAAGTAGACCCGAGCCTGGTAGGGGACACGGATGACACAGG
CGGTGGGAGGGGAAGGGTGATAGGGCGCGGGACAACGCCCGAAAATACGG
CCGGGGGCGCAGGAAAGGAAGGAAAGGGGGAGCCCGTGACCGTTGCCTTG
AACAGCAATGATTCGCTCTACGCGGAGATCCGAGACTTGCATTTGGAGGT
TCTGGGGCTTCAGTTGAATGAGAAGGCGATGGAGATGCGACAGACATACG
CACGCGTGAAGGAGGAAACGCGGGACGGCTCCCTGAACGAGATCCACGAC
GTGGTCAAGTCCATACCGGCCTTGCAGCAGAAGTACAAGGGCCTGAACCT
ACACATCAATATCGCGGAGTTTCTGAAACCCACTACCGGACACGTGCGCT
TTCAGCAACGCTGGCAATTGGAGCGGAGCATGCTGGAAGGCGAGACCTGC
TACGAGGACGTGGAGGAGATGGTGGCCGCGTACGAGCCCGTCGACCAGGT
CCTGCGCCTCCTCGCTTTGCAATCCCTGACTGCGGGAGGGATCAAGGCCT
CCAAGTACGAATTGCTGAAGCGAGAGATCATCCAATCCTACGGATACGAA
TATTTGTTCGCATTGACCAACATGGAACAGGCAGGGCTGCTCCGCAAGGC
GGACCTCCAACTCTCAAATGTCATGTTTGGCAGCATTGGTGCCAGCGGCT
TCTCGTCCACAGGGGGCTCAGGCAATGCGTGGGCGAGCCTGCGACGTCTG
CTCCGGCTTGTCAAGGAGAACGTAAACACGCAGGTCCCGGACGACATCGC
TTACGTCTCTTCGGGCTACGCGCCGCTCTCGGTCCGCTTACTTCAGCTTA
TTCAAAAGCCGGGCTGGGCATCTTGCTCGGACGTTTTCAAGTTCTTACCG
GGCCCTACTCTAGAATGTACACAGACCCAGGAAAACACGAGGAGGGGAGG
TGCGCCGCTCTCGTTCATGCAAGAACTGGATAGGCTTCTAGGCACTGCGT
GCAGCGGGACTGACGGAGACATCGGGGGGAGGCCTCAGCCATCCGTGACG
CCAGTGACACAACATCTTGGCCTTTCAGCTGCCGAGACTGGGGGGAAAAT
TTTGCCAAACGGGAAGACTGTCATGATGGTGTACTTTATCGGCGGGGTCT
CTTTTATGGAGATTGCAGCGATGCGGTATTTATCCCGGCATAAGGACTTT
CCGTACTCTATTATCGTCTGCACAACTAAGCTTATAAGTGGAAATCTTTT
TATAGAATCAGTTTTCGAGAACTTCAGAAACTCCCTTGGAAGATCGTAGC
GTACGTTGCATTAGTCGTGGCGCTTGGGAAGCTAAAAGGGCTGGGGCTTT
GAGCGAGTGGCGTACATCGTGGCCTCACATAGACGTGTAAAGCAATTGAA
GCTAACGATAAGGACG back to topCoding sequence (CDS) from alignment at CM002458.1:897747..901812- >rna2105 ID=rna2105|Name=rna2105|organism=Nannochloropsis gaditana|type=CDS|length=2295bp|location=Sequence derived from alignment at CM002458.1:897747..901812- (Nannochloropsis gaditana)
ATGGCCGCCCTGGCTTCAGGAAAAAAGCCAGTATTAGGTGCTGCACCTCC
GAACACTGCTAGCGCCCGCACAGCCCCCTCCACCCTGGAGGACAGCGCTA
TTCCTCTTTCTAAACTTCGCAGTCAAGGCCGCAAAGAGCTCCTCGACGTG
CTGCAAGCGGCGAGAGGTCGGAAGGCGTTGGTGCTGGATACAGCGTTGCG
TGGATTACTGGCTCACATTGTCCCTGAAGGAACTAACTTCCTGCGGCAGC
ACGGGGTCGTACACTTATGCCGAGGACTGCAGACTGACCTTACTTTTGTG
ACCCCAGAGGGCAGAGACGACGAGCCTGACAATATTTTGTACTTTGTACG
GCCTTCATTGAGTAACATGCGTATGTTGTCGGCGCAGCTCAAAAAGCGGA
ATGGCAAGCGTCAGAAGGGTGGGGGACGGAAGGCCTTAACCAGAAGTGCA
AGCGAGAGTGGGTCGGGCGGAGGTCCGTATCAGCCAAAGGAAGGCCGGCA
CCTCCTGTACTTCGTCCCGCACAAAACGTTTCTGTGTGAGCAGGCCTTGT
CGGATGAAGGAGTTTTGGAATGCTTCGCGGAGGTAGGGGAGTGTCATCTA
GATCTCTTTCCTCTCGACACCGACCTTGTCTCCCTGGAAATGGATACGTC
GTTCAAAGACGCCTACGTGGACGGTGACTCTACCATGCTTACTACCGTCG
CACGATCTCTTCAAAAGCTCGAGAAAAATTTCGGTGTGATCCCCCACGTC
AAGGCAAAAGGCACCTACGCCGCGGTTGCACTGCAACGGTTCTTTAATCT
GAAGAGACAGCAAGAAGAAGAGAAGCGAGGAGACGAGTTTGCGACGACTC
CGACCCCGTCTTCCTCCCACAGGGGTACAAGCGCGCCCGAGATCGACACC
TTGGTCTTGCTGGACCGGGCCGTGGACCTGGTGACGCCGCTCTTGACCCC
GCTCACCTACGAGGGCCTTTTGAACGAATGCTTGGGGATCCAGCACGGAG
CCATCAAAGTAGACCCGAGCCTGGTAGGGGACACGGATGACACAGGCGGT
GGGAGGGGAAGGGTGATAGGGCGCGGGACAACGCCCGAAAATACGGCCGG
GGGCGCAGGAAAGGAAGGAAAGGGGGAGCCCGTGACCGTTGCCTTGAACA
GCAATGATTCGCTCTACGCGGAGATCCGAGACTTGCATTTGGAGGTTCTG
GGGCTTCAGTTGAATGAGAAGGCGATGGAGATGCGACAGACATACGCACG
CGTGAAGGAGGAAACGCGGGACGGCTCCCTGAACGAGATCCACGACGTGG
TCAAGTCCATACCGGCCTTGCAGCAGAAGTACAAGGGCCTGAACCTACAC
ATCAATATCGCGGAGTTTCTGAAACCCACTACCGGACACGTGCGCTTTCA
GCAACGCTGGCAATTGGAGCGGAGCATGCTGGAAGGCGAGACCTGCTACG
AGGACGTGGAGGAGATGGTGGCCGCGTACGAGCCCGTCGACCAGGTCCTG
CGCCTCCTCGCTTTGCAATCCCTGACTGCGGGAGGGATCAAGGCCTCCAA
GTACGAATTGCTGAAGCGAGAGATCATCCAATCCTACGGATACGAATATT
TGTTCGCATTGACCAACATGGAACAGGCAGGGCTGCTCCGCAAGGCGGAC
CTCCAACTCTCAAATGTCATGTTTGGCAGCATTGGTGCCAGCGGCTTCTC
GTCCACAGGGGGCTCAGGCAATGCGTGGGCGAGCCTGCGACGTCTGCTCC
GGCTTGTCAAGGAGAACGTAAACACGCAGGTCCCGGACGACATCGCTTAC
GTCTCTTCGGGCTACGCGCCGCTCTCGGTCCGCTTACTTCAGCTTATTCA
AAAGCCGGGCTGGGCATCTTGCTCGGACGTTTTCAAGTTCTTACCGGGCC
CTACTCTAGAATGTACACAGACCCAGGAAAACACGAGGAGGGGAGGTGCG
CCGCTCTCGTTCATGCAAGAACTGGATAGGCTTCTAGGCACTGCGTGCAG
CGGGACTGACGGAGACATCGGGGGGAGGCCTCAGCCATCCGTGACGCCAG
TGACACAACATCTTGGCCTTTCAGCTGCCGAGACTGGGGGGAAAATTTTG
CCAAACGGGAAGACTGTCATGATGGTGTACTTTATCGGCGGGGTCTCTTT
TATGGAGATTGCAGCGATGCGGTATTTATCCCGGCATAAGGACTTTCCGT
ACTCTATTATCGTCTGCACAACTAAGCTTATAAGTGGAAATCTTTTTATA
GAATCAGTTTTCGAGAACTTCAGAAACTCCCTTGGAAGATCGTAG back to top
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