rna2104, rna2104 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2104
Unique Name	rna2104
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3339
Alignment location	CM002458.1:895913..897697 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100009g55.605.mrna
Orig protein id	gnl\|cribi\|Naga_100009g55.605
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:895913..897697 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g55	gene2012	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2104	rna2104-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28562.1	cds2096	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:895913..897697+
coding sequence from alignment at CM002458.1:895913..897697+

mRNA sequence

>rna2104 ID=rna2104|Name=rna2104|organism=Nannochloropsis gaditana|type=mRNA|length=3339bp
ATGGAGGAAGGAACCTTTGTGGAGGAACCACCTCCGCCAGCTGCAGTAAA
GGAGGAAGGAGAGGACGACGCCGTCGCCTCTGACGAGGGTGGGTTTAACG
TACAGGGTAAAGACGTAGGAATGCTTGACCACGGGAAATCAGTCAAGGAC
AAACGCACTGAAACTTCCGATGAGGCAGCGAGGGCATCTATGGAAGAGGA
AGGGGAGGTGCTGGACGAGGGAGAGGAAGAGGAGCCGTCAGGCCCCGCCT
CGGAACAACAGAAGCCTGACACGGGACCGCAAGATGCAGCGGAGGGTCTC
GAGGGTGGGGAAGGAGCGCCTCCCAAAGGTAGTAGTGATAAAGCTTCCTC
TGTCCCGGTGCGCCAAGAGGAGGTGGAGGAGGGCATCGAGGTCTTTGTGG
GCGGGTTGCATCAAGGGGTGAGAGAAGCGGAGCTGCGGCAGGTCTTCGGA
AAATGTGGAGAGGTCCTGGGCGTGCGTCTGATGAAAGATCGTCGGTCAAA
GCAAATGAAGGGGTATGCGTTCGTGCGGTATCGGAGTCCGCAAGAAGCGA
GAAAAGCGGCGGAGGAGTTGACGGGTTGCGAGGTGCATGGGAGAGCGCTG
GAGGTCCGCTCCTGCGAAGAGAACAAGCGGCTGAAGGTGAGCAACCTGGA
CAGGAGGTGGACGCCGGAGAAATTTCGGGACTTGATGGAGTCGGCGTTGG
CGGCGTACTCCGGAATTGTACTCGTGGAGCTCCAGGAAAAGTCGGAGGTG
AAAGAGAAGGGGGAAAAGGGCAAGGGGGAAAAGGAGGGCGAGGAGGAGGA
AGTGGAAGAGGGGGAGTTGGAAGTAGAGGAAGGGGAGGTGTCTGAATCGC
CCAAAAGGGGACCAGAAGAGAAGTCGACCGAGGGAGAGGGCGGCGCAGGG
GAGCGGGAGGCGAGCGCGGACGGGCAGGGCGCCAAGGAGGGTTACAAAGG
CAATGCTGGCTACGGCTACATTCACTTTGATTCGAACCCGCCAGCCCGGA
CCGCGATGAAGGGTTTGGAGGGAAAAGTGGTCCTGAAAGAGGAAGGCCGG
GTCCTTAAGGTGGAGTGGGCGCGGGGGGAGGAGGCGGTGGAGAAGCGAAA
AGCGGGCGGGAAGAAAGGGGCGGGGCCTGGACAAGGGGAAGGGAAGGAGG
CAGCGGTGAACAGCAAAACGACGATTCACGTGTCACGCCTGCCGTCGGAC
GTGCGCAAGGAGGAGTTGAGGGAGCGCTTTGGGCAATATGGGAAGGTGAC
GCGGGTTTGGATCTCATTCGAGGAGATCCCGGTCCGGGGAGGGGGCAAGC
GGGCGAACGACTACGCCTTCGTCTCGTTCGAGAGTGAGGCGATGGCGGCA
CGGGCGATAGAGGGGGAGGCGGGGGCGCCTTGGGAGGTCCGGGGGAAGAC
GGTGGAAGTGAAGCAGGCACGGGCTCGGAGCGAGGGAGGGGCGGGGGGGG
GCAAGGGGCAGGCCCAGGGGAAGGGCGGGAAAGGGAGGGAGCGAGAGAAG
GGGGGAAGGGGGAGGGGAGGGGAGCGCGAATGGGAGGAGGCTGGGGGAGC
GAGGGGCGGGCGGGCGGGCAGAGACAGGGGCCGCGATCGGTACGGCGGGA
TGGGCGACGACCCCCGCTTTTCCTCTTCCCGAGGGCCCTTCAGGCCCGCC
CCGATGCCCCCCCTGCCTCCCTACGACCCACCAGGGCCTCCTCCCCCTCT
TCCACCCATGCCTCCCCCTCCTCCCATGATGATGATGCCAGCACCCCCAC
CCCCGTCGCAGCCTTACCCCCCCCTTCCCCCCACGCCGTACGCGAGACCG
GGGGCCATGCCGAGTGGGCCCCTGACCTTCCAGGGCCAGCTGGGGTATGT
GCGGGAGGGGGGGGAGGGCGGGAGGGAGTATGGTGGTGGCCGAAAGCGGC
TGCGAAGTGGGAGCGAGGAATGGGAGGGGGGGCGGGAGGGAGGGGCGTGG
GAACGGGGCGGCAGCAAGCGCTGGCGTTCGGAGGCCCGGTCAAAGTATGG
GCCCGGCGGGGGGAGGGAGGGAGGGAGGGATGGAGGGAGGGAGGACGGGC
GGCGTCGGAGTGGGGTGCAGAGTCGTTCTCCTCCAGGTCGACAAGGATGG
CGGGAAGGCGGGTCTTACGATGAGGATCGCTTCTCCTCGGAAGGAGACTA
TCCACATCGCGGGCTCGACGAGGGGAGAGGAGTTGGGCGTCGGGAGGAAC
GGAGCCGTGGCGGAGACCGGCGCCGAGGGGGAGGAGAAGCAGGGGGTGAC
GTCAGTGGTCCTATGTATTATGACCGGGGGGAGGGCGAGTGGAATGGCGT
GGGGCGGAGCCGTGGACCTCCGCCGCTTCCTCCGCCGGTAGCGCCCCTCC
CTCCCCAACAACAGCCGCCACCCTTACCGTCCACGTTGGCCTACGGCACT
CCTGTTGTCTCATACCCTCAGCAACATCATGCAACCCAACACCAGCAGCC
TCCGCTTCCTGCGCACGCGCCTCAACCTGCCTGGGGCCCGGCACAACAGG
CTTACCCTCCGACGGCCATGCCCCCCCCCGCCTATCCTCCACCGCAGCAG
GGTCCTCCCCTTCATCACCTTCAGCAGCCGCCCTCGGCTCCCATCTCCCA
ATATGGGCCACAGGCTGGCTATGCGGCACCTGCATCTCAACAGCAATACC
CGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCCTCGGAGCAGATGCCC
AATCCATCACCCTTTCCACCCCAGCAGCCGCACATCTCGGGGGCTCAGTC
CTCTGCCACCTCCCGTCTGATGCCTCCAGGCGCCAAGAAGCTCTTACCAC
CGGGAGCACGAGTGGGCCCAAGTGGAAAGACGGCTGCTCGCATGCCTGGA
GACCAATCGCCGCAGCCCCAGCAAGAGCACAGGGTCCCTGAGCATCGTCA
GCAGCAGTCCCACCACCATTCTCAAGCTCAGCAGCCTTACTACATGAACC
CTCCTCCCACAGGACAAGGCTATCCTCCCCAGAATGGTTTTCAGCAGCAA
CAGCAGCAGTTACAACCGCCACAACAGCCGTATTACCCACCGCCACCGCA
GCAGCCACCTGCAGGCTACGCATACCCACCTTCCAACATGCCTCAACAAC
AGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCCTTATTTGCCACAGGCGCCGCCTCAATCAACACCTGAGGGCGGTGG
AGGCAGAGAGCGCAATCGTGGCCGTCCAAGAAGCGGTCGAGGTCGTGATA
GGAGCTCGCGTGGAGGGGGTACTGATCAACCACCACCACAACGCGGTGAC
AAACCTTACGCCTTTCTACAAAAGCGACGTGGAGACTAG

protein sequence of rna2104

>rna2104-protein ID=rna2104-protein|Name=rna2104|organism=Nannochloropsis gaditana|type=polypeptide|length=105bp
MPTTMAFEEKSFDAVSPSSSPSSSYFLVPPWRVFDTGSDDAEGNALRMAS
TNSSPDEKFKGGTNLDSASFVVMEKLSRNASIFSSSRSLSSKMGGVSSKP
TRTRP

mRNA from alignment at CM002458.1:895913..897697+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2104 ID=rna2104|Name=rna2104|organism=Nannochloropsis gaditana|type=mRNA|length=1785bp|location=Sequence derived from alignment at CM002458.1:895913..897697+ (Nannochloropsis gaditana)
TTCATTCATTTTACAATTATAAATCTAGATCATCGTCTATGTCTTCATCA
tactcctcctcttcctcctcctcctcctcctcttcctcctcctcccctcc
agctcccctTTGTTTGATCTTCCTGTCCCAAGCATACGCTTGAGAAGTCT
GTTGGTGGTCCAATATTTTTTGGCGCTCATGAGGTAGAATTGTCTGGTCC
CTCATGGCACGCTCTTGTTCGTTGAGAGAGAGGCGAAAAGGCAGGCTCTC
CACAAAAGctgctccttttttcttgctgCCGCTCACGCCGTCTATACTAT
CTACCTGCGCACGTGATGAATCAACTAATGCTTTGCTTATTTGAGGTCCA
GGATATACAGTACGTGAAGGTTCAGGGCTGAACGACAAAGTCTTTCGCTT
GGCATCGAAGCTGTAAGACTCCCATTCCTCATGGACCTTCCCAGAGGCAC
TTTTCCTTATCACCTGGCATCGACCCGAGGCCTCGTCGTCCGGGAAGAGG
CAAATATTTGTGGTAGCTAGATCCTCCAAGGCTATCATCCACTCTCTAGA
TAACAGGGACTCTCCGCCCGTGCCACAGGGCTCCGGATGGAGCACGGTCA
AGATTGGAGAGACAAAGCGGGTACCCCCAGCATGCAGGAGGCTTCGCAAT
GTATTTAAGAGGGCTGGCGTGCCATCGAGCCTGTGAGCCAGCATATTCAG
GGAATCGATGCCTACCACAATGGCCTTCGAAGAGAAGTCGTTCGATGCtg
tgtctccctcctcctctccgtcctcctcgtacttCCTAGTACCCCCTTGG
AGGGTATTTGACACGGGTTCAGACGACGCGGAAGGCAACGCTCTTCGAAT
GGCGTCCACGAACTCTTCTCCAGATGAAAAATTCAAAGGTGGCACAAATC
TTGACTCGGCATCCTTTGTGGTCATGGAAAAGCTATCCAGGAACGCTAGt
attttttcctcgtcccgaTCATTGTCCAGCAAAATGGGAGGAGTATCCTC
CAAGCCCACCAGAACAAGGCCGTGATACCGTAGCGAGTCTCTCAATCTCG
CAAGCAAATGATTGTAGACAATCCTGGTGTGTCCAGCGAAAACTTGGGCT
TTATATGCAGACGAGGATGGTGGGGCAGTCGGTCGAGCGTGGACTATGAC
CAAAGACGAGCCAGAAGATGATAAATGACCACCTTTGCTCACAACGGCGC
GCTCCACGGCTGACTGtatcgaggaagaagacaaaTATGCCATTCTTACG
ACTTTGTGCCTGTTCGATGGTAGAAAGAAAGGTTTGAAAGCCGGTAAAAT
AATCTTTAACCAAGGTCAcatgaaggggaggcagtAAAGCCGGATCCCGG
GATGAGTGCGTGTTTCGATTCTTTGTAAAAGGAGTGTTTCCTAACGCAAT
AGTATTGTCTGACATTAGAGCAGACGGGGGAGCCCATACGATAGAACCGA
TTACATTCAAAGACATGGTGAGCAAGCACGACAATCGTATGGCTAACCTC
CTGGCGGTGTCCGCCGGAATGCAGCCATGGGCCACCGGTAGCAAGTTTTT
AGCCTAAGCAAGGTTATTGTGAATCATGGGGGTTATCTTATCAGAACATT
GACTTCTGTTAAATTTTCATGGATTCTTTCTTCACCATTGCAGCGGCCTC
GCGGGTACTACGGTACAGGCCTCTGACTCGCCATGACTCAAGCGTTTTAA
TGACTGGAAATTTAGATAGGGAAGAACAGTACAAAAACACCCATTTTACT
TGCGTAATGTTTCACTCGCTCCAAGCTATTTGCCA

Coding sequence (CDS) from alignment at CM002458.1:895913..897697+

>rna2104 ID=rna2104|Name=rna2104|organism=Nannochloropsis gaditana|type=CDS|length=318bp|location=Sequence derived from alignment at CM002458.1:895913..897697+ (Nannochloropsis gaditana)
ATGCCTACCACAATGGCCTTCGAAGAGAAGTCGTTCGATGCtgtgtctcc
ctcctcctctccgtcctcctcgtacttCCTAGTACCCCCTTGGAGGGTAT
TTGACACGGGTTCAGACGACGCGGAAGGCAACGCTCTTCGAATGGCGTCC
ACGAACTCTTCTCCAGATGAAAAATTCAAAGGTGGCACAAATCTTGACTC
GGCATCCTTTGTGGTCATGGAAAAGCTATCCAGGAACGCTAGtatttttt
cctcgtcccgaTCATTGTCCAGCAAAATGGGAGGAGTATCCTCCAAGCCC
ACCAGAACAAGGCCGTGA

Synonyms

Publications