rna210, rna210 (mRNA) Nannochloropsis gaditana

Overview
Namerna210
Unique Namerna210
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length677
Alignment locationCM002455.1:537805..539664 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100013g5.9754.mrna
Orig protein idgnl|cribi|Naga_100013g5.9754
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:537805..539664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g5gene201Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30466.1cds210Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna210rna210-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna210 ID=rna210|Name=rna210|organism=Nannochloropsis gaditana|type=mRNA|length=677bp
TGAGGGAATATTATTCAGCCTATCCACAACTTCTTCATATGCCACAGTTT
CACGGATGAATCGACTGCCTATACGTGGTTCAGGTTCCAGCGAGGACGAA
CGTCCTTCTAAGGAGACGCTTAAGAAAGCTGCTCGGGTTCGCATCGATGT
TTTGGCGGGGAGTCTCCGGGGTCTGGGATATGGTCTGTTGTTAGGAGCAG
GAGGATTTCCTTTGCTGAAGCGTTTTTTGCCAATTACATGGCAAGGCTCT
AAGCATCATGTATTTATTGCTCTTGCGACGAGCGCATTGGGCAGCTTTGT
CGGGTCTGCAACGGCGACCCGCAATTCGCTGGAGCACGTTGTATCTGGCT
TGCAGCGGGTAGTGCCCCCAGAGGTGCAAGCGGCAGAAGACGCGTTTCGA
CGGCGACGGAAAGCCCTTGCAACCAAAGAAAACACAAACATCAGCCAAAA
TGAACGGGAGGGGGGCTTCTGGGGGCTGCCTCCTGAGCCCGGCAATGGGT
TGGGTGACACGCGATACCGTCAGAGTGGACCGGCCGAGAATCTGCGACAC
GGGAAGCCACCTACCACATCTTCAGAGGGCGCACCGGTAAATCACTCTGA
ACCACGCTCCTTTTGAACCGTAAAACAAAATGGTTCTAGAACTCATGCTG
CCTTTTGCATGACCTGTCCCTGTTTGC
back to top

protein sequence of rna210

>rna210-protein ID=rna210-protein|Name=rna210|organism=Nannochloropsis gaditana|type=polypeptide|length=254bp
MSPYLLYRRHTDSDKDAETLAIWFHSEKDRVHIAGCLQKVLRLHSSVDPK
QQDQWQAQERESLLGSALPPAPTLTDLSRVDNTEAMKSRTTSTSAETTKE
KKPTAIEDLLLKAASLGGGSAITRPELDRKADTLTTSPARRAAAASPPAI
TNMLLRPKVATAHAAPAAETGRPTCTNGSGRGPGQGSIVSTLLNPLGMVR
PISNSTCSDSGNGGTISPARSLDKQQLKEALLALLEEDAFLETLHRAYLR
RRTE
back to top

mRNA from alignment at CM002455.1:537805..539664-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna210 ID=rna210|Name=rna210|organism=Nannochloropsis gaditana|type=mRNA|length=1860bp|location=Sequence derived from alignment at CM002455.1:537805..539664- (Nannochloropsis gaditana)
TGTTTAAAAGTAATGGATCAAAACGGCCATCTTCCGTCCCCATAGTTTTC
TTTTCCACGTATGTGTGTCTGTGCATGGGTGGAATGTACGCGACCGAGAA
GTGAAAGACTTGAGATGAGGAAGCAAAAAAGGTGTATCCCGAGCCTCGCC
ATTTGTTCCATGCACGCGATGCAGTGAGGGGTGGCTCAACACACTTTCAC
TCCATTTCTTGCAGCTGCCGCCCACAAAAAGCGCACTATCTGATACTTCA
CGTCTTGCCTTCTCGACCTAGAATTGACGTTCCGCACGAAATCAATAGAA
ATGACTCTGTGCAAGACTTTTAAAGGGGGTGAAATATGGCTGCTGTTGCC
CTCTCGATCTACAAGAAACACAACAATCTGAACAGAGTATGATTCTGCCC
TCTAACTAGCAGATGCATGTATCATCTCTGCACGAGTGCACCAGCACTAA
CTTATCGATGTGCATCCATCCCTGATTTTCTTGTTATTGACCTTGCACAG
GAGAGATCATGGCGACCGAGAGCGGGGGCCTAGTGAAGAGGACTCCGCAA
CAGGTCCAGGCGGCTAACCTCTTGATTCTTCAAAGAAGCGACGATGCCGT
GTCCGAGATACTTGCAACAGCGACACATGTTGTCATTTATGTCTTTGCAC
CCGCGACCAAGCAGTGGGAGCGTAAAGAGGTGAGTTTCAAGCGAACACCA
TGTGAATGCATGGTCACGGAAGAGACGGCTCTCTTTCATATTGCACAGGC
CACACACACCTCGATTAAGTGAATGTAAATCTACACATGCATGATTGTCG
TGTTGAGTTCTTCATCAAATATCGGAGATAGAGCGCGGTTGCGGCTATGA
TAGCGAAATTGACGCCGCGCACATCAACGTATGACTTATGTGGTGCATTG
AACAATTTCTAGATCGAAGGCTCACTTTTCGTAGTGAAGCGCAATTACGG
AGTACGTTTTCGATTGGTGGTGCTTAATCGCGTTAAACGCGGGGATCTTG
AAGAAGACTTGGACTCGAGTTTCACCTTCGAGGACATGAGTCCCTACCTC
CTCTACCGCAGACACACGGACTCAGACAAAGACGCGGAGACCCTGGCCAT
CTGGTTTCACAGTGAGAAGGACAGAGTGCACATTGCGGGATGCTTGCAGA
AAGTTCTTCGCTTGCATTCTTCCGTCGATCCGAAACAGCAAGATCAGTGG
CAGGCACAGGAGCGAGAAAGCTTACTTGGATCCGCCTTGCCGCCGGCCCC
AACCCTCACTGATCTGTCGCGCGTGGATAATACGGAAGCAATGAAGAGCA
GGACGACCAGTACGAGCGCCGAGACAACCAAGGAAAAAAAGCCCACAGCA
ATCGAGGACTTGCTGCTAAAAGCCGCTAGCCTGGGTGGTGGAAGCGCCAT
CACGCGCCCCGAGCTCGACAGGAAAGCAGACACTCTAACGACCAGCCCCG
CCAGGCGTGCTGCGGCAGCCTCACCGCCGGCTATTACGAACATGCTTTTG
AGACCGAAGGTGGCAACGGCCCATGCCGCGCCCGCTGCAGAGACTGGACG
TCCCACGTGTACCAATGGGTCAGGTCGTGGTCCAGGGCAGGGTTCTATTG
TTTCGACCTTACTGAACCCGCTAGGAATGGTGAGGCCGATCAGTAATTCC
ACATGCAGTGATAGCGGTAATGGAGGGACCATATCACCAGCAAGGAGTCT
CGATAAGCAGCAGTTAAAGGAAGCTTTGTTGGCACTACTTGAAGAGGATG
CTTTTCTTGAGACCCTGCATCGAGCTTACTTGAGACGACGGACTGAATAG
ATTGCTAGCCTCACAAACTTAACAGAAAAAAACGTAAGATATGTATAATG
TAATACACGC
back to top

Coding sequence (CDS) from alignment at CM002455.1:537805..539664-

>rna210 ID=rna210|Name=rna210|organism=Nannochloropsis gaditana|type=CDS|length=765bp|location=Sequence derived from alignment at CM002455.1:537805..539664- (Nannochloropsis gaditana)
ATGAGTCCCTACCTCCTCTACCGCAGACACACGGACTCAGACAAAGACGC
GGAGACCCTGGCCATCTGGTTTCACAGTGAGAAGGACAGAGTGCACATTG
CGGGATGCTTGCAGAAAGTTCTTCGCTTGCATTCTTCCGTCGATCCGAAA
CAGCAAGATCAGTGGCAGGCACAGGAGCGAGAAAGCTTACTTGGATCCGC
CTTGCCGCCGGCCCCAACCCTCACTGATCTGTCGCGCGTGGATAATACGG
AAGCAATGAAGAGCAGGACGACCAGTACGAGCGCCGAGACAACCAAGGAA
AAAAAGCCCACAGCAATCGAGGACTTGCTGCTAAAAGCCGCTAGCCTGGG
TGGTGGAAGCGCCATCACGCGCCCCGAGCTCGACAGGAAAGCAGACACTC
TAACGACCAGCCCCGCCAGGCGTGCTGCGGCAGCCTCACCGCCGGCTATT
ACGAACATGCTTTTGAGACCGAAGGTGGCAACGGCCCATGCCGCGCCCGC
TGCAGAGACTGGACGTCCCACGTGTACCAATGGGTCAGGTCGTGGTCCAG
GGCAGGGTTCTATTGTTTCGACCTTACTGAACCCGCTAGGAATGGTGAGG
CCGATCAGTAATTCCACATGCAGTGATAGCGGTAATGGAGGGACCATATC
ACCAGCAAGGAGTCTCGATAAGCAGCAGTTAAAGGAAGCTTTGTTGGCAC
TACTTGAAGAGGATGCTTTTCTTGAGACCCTGCATCGAGCTTACTTGAGA
CGACGGACTGAATAG
back to top
Synonyms
Publications