rna2099, rna2099 (mRNA) Nannochloropsis gaditana

Overview
Namerna2099
Unique Namerna2099
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1677
Alignment locationCM002458.1:880456..882269 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100009g62.644.mrna
Orig protein idgnl|cribi|Naga_100009g62.644
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:880456..882269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g62gene2007Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2099rna2099-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28601.1cds2091Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2099 ID=rna2099|Name=rna2099|organism=Nannochloropsis gaditana|type=mRNA|length=1677bp
ACGTATGCCTTGTGGCGTATCACGATATGGGACTGAGTGCGATCACCCCG
GTCATGCTATTTCCGCACGCGACTTGCCCTATCAGCTAGAACTTGAGACC
TAACCAGACGAAAACACACGACATACCAGGTAATAAAGCGGAAAGCGTCC
GTCCACACACGCTAGCACAACGATGAAGATCAGCCAGCGAGTGGCATTGC
CTTCCATGTTAGGCACTTCGCCGTGACCAGAAAGGATGGTGCCGGCATTT
GTGGCGGGAAGGCAGCCCTGGTACGTCTGGGCAGTGTGGGCCGGAACGCT
CCTCCTCCTGTCGCGTCGAGTCTGGCAGGCCTGCGACCGCGCAGTGATGG
TCAGCGGCGTTGAGGATGAAGGCAGCACTTGCAGCACGGGTAGCAGTTTT
GAGAGGGCTTTCCCACTCAGATTCTGTCACAAGATCCACGACAGCGGCTA
TGCGATCTGGAGATGGATAGAACTCCAAGAAGACGCTCTGGCCTTGGGAA
CGGCCTCCCCCCCGCGCGCCCTTCTCGCCCTCGGCGTGCAGGGAGTCCTG
GGTCTGTCGGGGGCCTTAGAGGGGGAGGGGGGCTGGTGGATTGGCCTGGC
GACGCTTTTGATCCTCACGGTGTGCATGCAGAAGGACGTGATTCGGGCCC
TCTACAGGCCTTGGGTCGCATTCTTTCTGGCGTGCCTGGGCGGGAAAGAG
GACTGGGTGGCTGTGAGCGAGGCGGAGTTGCCAGAGCTGGAGGACACGGC
AGTGATCGCGAATGAAGCCTGGCAAAGAGGGAGAGAGCAGCGGAAGCCGT
CGCAAAGAGAGGGGAAGGAGGTTCGGCACAGGACTATAAAAGAGGAGGAG
GAAGAGGAGGAGGAAGTGGTGGTGGACGAGGTCCGCGATGTGGCGGGAGA
GAGGGGCCTGGGTGACGAAGCTGTCAGAAGAATGCTCACCGCTCCTTGTG
GGGGCAGTTCCTCTCGTTATGGTGGAGCGAAACGAGGTAACACCCGGCAG
TGTGCCTGCCGCACCCACTGGGACACTAGTAAGCCCTGTGCTTCTGACTG
CGCGGCTTGCAGCGAGGAAGCTGACGGTGTCTTGCCCCCCTTGCTAGCCT
CGAAGCGCGTACCTCCGGCTGGATGGCTAGTCTACGACCCTATCCTGGGT
CTGGTTACCTACGAGGAGTCGATAAAATGGCGGGAAGGGAGGAGAAGCGC
TGGCGACAGGGGTGGAGGGGGCGTGGGCAGGACGAAGGGAGGGGGCGGTC
GAGGCAACGAGGGGAGCCCTCGGACAAAGCCGGGCTCGCGGAGGGCCAGC
AGAACGCAGCAGGGACGAGAGGAAAAGTTGCAAGCGGCGGCCCGAGCGTA
CCGCTCTCGAGGCGCCCTGTCCCTCGCTGGTGAGATCGGCCCGCCGTCCT
CCTCCGTGTCGGCCTGAGCCACCTGGGAGAGAGGGGGGATGCCGGGGAAA
TGATTGGGCGATGTACAGAGCACACCCATGCCAGGGTATGCACGCGTCTG
CGCTCGGAAGGGGTGCTAATCGATAGGGGGGAAGGGGGGGAAGCAATCAT
CCGTCAAATGTTCATATGTGCGTGTCAGCGCGGTCCCACCCGCGATTTGA
AACGTGCTTAATTCTACAGCCCACGCGGCAATTAAAGATAGAGAGCACAT
GTGAAATACAGGACCGTTACTCTGCGT
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protein sequence of rna2099

>rna2099-protein ID=rna2099-protein|Name=rna2099|organism=Nannochloropsis gaditana|type=polypeptide|length=347bp
MTESRPDRTLTQLPGRFCHKIHDSGYAIWRWIELQEDALALGTASPPRAL
LALGVQGVLGLSGALEGEGGWWIGLATLLILTVCMQKDVIRALYRPWVAF
FLACLGGKEDWVAVSEAELPELEDTAVIANEAWQRGREQRKPSQREGKEV
RHRTIKEEEEEEEEVVVDEVRDVAGERGLGDEAVRRMLTAPCGGSSSRYG
GAKRGNTRQCACRTHWDTSKPCASDCAACSEEADGVLPPLLASKRVPPAG
WLVYDPILGLVTYEESIKWREGRRSAGDRGGGGVGRTKGGGGRGNEGSPR
TKPGSRRASRTQQGREEKLQAAARAYRSRGALSLAGEIGPPSSSVSA
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mRNA from alignment at CM002458.1:880456..882269+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2099 ID=rna2099|Name=rna2099|organism=Nannochloropsis gaditana|type=mRNA|length=1814bp|location=Sequence derived from alignment at CM002458.1:880456..882269+ (Nannochloropsis gaditana)
GCGGAAAGCGTCCGTCCACACACGCTAGCACAACGATGAAGATCAGCCAG
CGAGTGGCATTGCCTTCCATGTTAGGCACTTCGCCGTGACCAGAAAGGAT
GGTGCCGGCATTTGTGGCGGGAAGGCAGCCCTGGTACGTCTGGGCAGTGT
GGGCCGgaacgctcctcctcctgtcgcgTCGAGTCTGGCAGGCCTGCGAC
CGCGCAGTGATGGTCAGCGGCGTTGAGGATGAAGGCAGCACTTGCAGCAC
GGGTAGCAGTTTTGAGAGGGCTTTCCCACTCAGGTTAGTGAGGTGAAATG
AGGACATAATAAGATCGGGAGTTCCTCACGGTGCCATTCCGGTAGCGCGT
TTGGGGCTAGAAAGCTAGAAATTAGAATGTTTGTTTTTCCGTATACCTTA
CGCCGGACTATTACGCAGCCGTGATTTTGCTCATTCGCATTTCGCTTGGC
CAGTCAGTGAACTGCACAAATTTCTGGCGCTCATTATGGCTCTTGGTGTG
CTTCAATTAGATGACAGAAAGCCGACCTGACCGCACTCTCACACAATTGC
CCGGTAGATTCTGTCACAAGATCCACGACAGCGGCTATGCGATCTGGAGA
TGGATAGAACTCCAAGAAGACGCTCTGGCCTTGGGaacggcctccccccc
gcgcgcccttctcgccctcggcGTGCAGGGAGTCCTGGGTCTGTCGGGGG
CCttagagggggaggggggctggtGGATTGGCCTGGCGACGCTTTTGATC
CTCACGGTGTGCATGCAGAAGGACGTGATTCGGGCCCTCTACAGGCCTTG
GGTCGCATTCTTTCTGGCGTgcctgggcgggaaagaggactgGGTGGCTG
TGAGCGAGGCGGAGTTGCCAGAGCTGGAGGACACGGCAGTGATCGCGAAT
GAAGCctggcaaagagggagagagcagcgGAAGCCGTCgcaaagagaggg
gaaggaggttcggCACAGGACTataaaagaggaggaggaagaggaggagg
aagtggtggtggacgaggtccGCGAtgtggcgggagagaggggcctgGGT
GACGAAGCTGTCAGAAGAATGCTCACCGCTCCTTGTGGGGGCAGTTCCTC
TCGTTATGGTGGAGCGAAACGAGGTAACACCCGGCAGTGTGCCTGCCGCA
CCCACTGGGACACTAGTAAGCCCTGTGCTTCTGACTGCGCGGCTTGCAGC
GAGGAAGCTGACGGTGTCTTGCCCCCCTTGCTAGCCTCGAAGCGCGTACC
TCCGGCTGGATGGCTAGTCTACGACCCTATCCTGGGTCTGGTTACCTACG
AGGAGTCGATAAAatggcgggaagggaggagaagcgctggcgacaggggt
ggagggggcgtgggcaggacgaagggagggggcggtcgAGGCAACGAGGG
GAGCCCTCGGACAAAGCCGGGCTCGCGGAGGGCCAGCAGAACGCAGCAGG
GACGAGAGGAAAAGTTGCAAGCGGCGGCCCGAGCGTACCGCTCTCGAGGC
GCCCTGTCCCTCGCTGGTGAGATCggcccgccgtcctcctccgtgtcggC
CTGAGCCacctgggagagaggggggatgcCGGGGAAATGATTGGGCGATG
TACAGAGCACACCCATGCCAGGGTATGCACGCGTCTGCGCTCGGAAGGGG
TGCTAATCGataggggggaagggggggaagcaatCATCCGTCAAATGTTC
ATATGTGCGTGTCAGCGCGGTCCCACCCGCGATTTGAAACGTGCTTAATT
CTACAGCCCACGCGGCAATTAAAGATAGAGAGCACATGTGAAATACAGGA
CCGTTACTCTGCGT
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Coding sequence (CDS) from alignment at CM002458.1:880456..882269+

>rna2099 ID=rna2099|Name=rna2099|organism=Nannochloropsis gaditana|type=CDS|length=1044bp|location=Sequence derived from alignment at CM002458.1:880456..882269+ (Nannochloropsis gaditana)
ATGACAGAAAGCCGACCTGACCGCACTCTCACACAATTGCCCGGTAGATT
CTGTCACAAGATCCACGACAGCGGCTATGCGATCTGGAGATGGATAGAAC
TCCAAGAAGACGCTCTGGCCTTGGGaacggcctcccccccgcgcgccctt
ctcgccctcggcGTGCAGGGAGTCCTGGGTCTGTCGGGGGCCttagaggg
ggaggggggctggtGGATTGGCCTGGCGACGCTTTTGATCCTCACGGTGT
GCATGCAGAAGGACGTGATTCGGGCCCTCTACAGGCCTTGGGTCGCATTC
TTTCTGGCGTgcctgggcgggaaagaggactgGGTGGCTGTGAGCGAGGC
GGAGTTGCCAGAGCTGGAGGACACGGCAGTGATCGCGAATGAAGCctggc
aaagagggagagagcagcgGAAGCCGTCgcaaagagaggggaaggaggtt
cggCACAGGACTataaaagaggaggaggaagaggaggaggaagtggtggt
ggacgaggtccGCGAtgtggcgggagagaggggcctgGGTGACGAAGCTG
TCAGAAGAATGCTCACCGCTCCTTGTGGGGGCAGTTCCTCTCGTTATGGT
GGAGCGAAACGAGGTAACACCCGGCAGTGTGCCTGCCGCACCCACTGGGA
CACTAGTAAGCCCTGTGCTTCTGACTGCGCGGCTTGCAGCGAGGAAGCTG
ACGGTGTCTTGCCCCCCTTGCTAGCCTCGAAGCGCGTACCTCCGGCTGGA
TGGCTAGTCTACGACCCTATCCTGGGTCTGGTTACCTACGAGGAGTCGAT
AAAatggcgggaagggaggagaagcgctggcgacaggggtggagggggcg
tgggcaggacgaagggagggggcggtcgAGGCAACGAGGGGAGCCCTCGG
ACAAAGCCGGGCTCGCGGAGGGCCAGCAGAACGCAGCAGGGACGAGAGGA
AAAGTTGCAAGCGGCGGCCCGAGCGTACCGCTCTCGAGGCGCCCTGTCCC
TCGCTGGTGAGATCggcccgccgtcctcctccgtgtcggCCTGA
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Synonyms
Publications