rna2095, rna2095 (mRNA) Nannochloropsis gaditana

Overview
Namerna2095
Unique Namerna2095
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2539
Alignment locationCM002458.1:877065..878259 +

Link to JBrowse

Properties
Property NameValue
Productsecreted salivary gland
Orig transcript idgnl|cribi|Naga_100009g65.598.mrna
Orig protein idgnl|cribi|Naga_100009g65.598
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:877065..878259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g65gene2004Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2095rna2095-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28555.1cds2087Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2095 ID=rna2095|Name=rna2095|organism=Nannochloropsis gaditana|type=mRNA|length=2539bp
AGCCGAGAGACGTCCGGCGGCAAGGGCTGGCTTTTTCAGAGAGAGGGTGA
AAAGCATAGCTGTATAACTAGTAAGCGGGAGGCTGTGCGGTGGGCGGCGT
GAAGTCGTGGTGTGAGAGCTATGAATACAAAAGAGATGATACTGTCCGCA
GCGACAGGCAGCCGGAAGGAGAGCCGCTCTCCAAATGCGTGGTCCTATCA
CCCATTTGTCGAATGTTCAAAGAGGCACACAGATGAGCGCAAAATCCATT
GATTTAAGAAGGCACATCACTAAGCCAAGCATGTAAAGAGCAGTGGATAT
TTCGTGTCACCGTCACTGCAACCGCCAACCTCCTCCCCCTCCTCAGCGGA
TTGCTTCCAAGACGCCTGTCCGATAGTTGGATTTCAGACGTGGTCCAGCC
TGCCCAGCACTCAACTCAGCGACAGCCTAAAAAGCTTCACGCTTGATGGA
GTCTAGCACAGATCGTCAATTTCAGGCATCTTACGGCGTTTAAAAACCCG
GTCGCTCGCTTGTGGTGTCTGTATTTGTTCTCCAAAGCGAAATGCTTTTG
GCAAAGGAAGCTATGTTGTGAGGTATTTTAAGGCCTTCATCCTCCCCACA
CAGCACTGCTGCTCTGCAATAAGCTTCTGCGGACATGTTCTGGTGGCTCT
CAACAGCAGCTGAGCGCCTGCAACGAAAAGCAAGAGCGAAACGCGCGGAA
TTCGAAGCCAAATGGGCACAACCTCTACCGCCTCTGGCGCCTGAGCTGGA
TGCGGCCAAGGAGACGAAAATTGCTTTGGAGTTATCGATCGAAGACCTCG
TAGCACTCATGCAGGACGGCACTTTCTCTTCGCACGACGTGGTAAGCGTA
TTGGCCAAACGCGCAAGAGAGTTTGGGGGACCGGCAGGGGTCAACGCCTT
GACGGACGTGCTTTTCGAGGAGGCGTTCGTCGAGGCCAGAAGAAAAGATC
GCGACCGACAACGGGGGGGGGGCGAGAGTGACGCTGTGGGGGTGCTCGAA
GGAATTCCTCTGTCCGTCAAGGACCACATCGATGTCAAAGGCACCGATTC
CACCACGGGGGCCGCCTGTCGATGCTTCCGGCCCGCCAGCAAGGACGCCT
TGGTGGTGGAACTATTGCGGGACGCGGGGGCCATCGTCCTGTGCAAGACC
AACGTGCCCCAATGCCTCATGCTTCCTGAAACCAGCAACAACATTTGGGG
CGTCACGTCCTCACCCTGGAACCTCACACGCTCTGCGGGGGGCAGCAGCG
GCGGCGAGGCTGCCTTGGTGGCGGTTCGAGGGAGCTTGGTAGGGATCGGA
ACGGACATCGGCGGCTCCTGTCGGGGACCCGCCCATTTCAGCGGCTGCGT
CGGATTTAAGCCGACGCCCGCCCGGGTCTCGGGGAAAGGGATCGTCATGC
CCTCGAAAAGCGGAAAGATGGGCATGCAGGCGATCAGAGCGACGGCGGGG
CCACTGGCCAACCGCGTGGAGGACGTGGCCTTGGTATGTCAGGCCTGGTG
GGTGAATAAGATGTGGGCTCGTGACCCCTACGTGGTGCCCCTACCCTTCG
ACCACGCGGCCTACCGACGAGGCGTGACCAAGGAAGCGCAGCAATGGGAG
CGAGGGGGGGGGGGAGAGCAGACTAGGGATGGGGGGAAGGGGAGGCAAGA
AGAAGCGAGTTCGCCAGGGGGGCGGAAAATCCGATTGGGCTGGTTCTTGA
GCGACGACTTTTTTGAGCCTTGCCGGGCAGGGAAACGCGCGGTTCGCGAA
GCGAAGCAAGCTTTGGAGTCGACAGGAAAGTACGAGCTAGTAGAGATGCG
CTTGAGCACAGCAACCGATGGCTGGGAGGCCGTGCGCCTTTATTACAACA
TCATGACGGCCGAGGGAGGCCTGCGGAGTTACATCGACGCCCTGGAAGGA
GAAGCGATGATCCCGATGTATCGGAACATACGACTTGCCGCCTGCTTCCC
CGATTTCTTGCGACCCCTGCTCCACACCGCCTTGTACTTGACAGGAGAGA
AACGGAGACGTTTCTTGGTCAAAAATATGCGGCGTGATGGGCTGGCAACG
CGGACCTACTGGCAGTACTGCGAGGAGCTTCAGAACTATCAAGAGGCGTG
GACTCGAATGATGCAAACGCAGAAACTGGATGGGTTTTTATGTCCAAGCG
TGGCTTTACCTGCTTTTCCTCACGGATGGTCGTCGCATTTGGAAAGCTCG
TGTTCTTACAATCTATTTTTGAACCTCCTTCACTACCCTGCTGGAGTGAT
ACCGGTCACTCAAGTGCGGGCCGATGAAGCCGTCTATCCCATAAGCGATC
TCCCCCGCATGCAGCGGGATTCTATCGCACGAGCCGCTGCGATAGCTATG
CAAGGGAGCGAGGCCTTGCCTGTGAGCGTGCAAGTCGCATTCCCACCTTT
TCAGGATGAGATGTGCCTTCACGTCATGAAGGATTTACAGGACGCTGTTG
GATTCACGGCTTTACCGCCTTATGCGAAGCGATCCGTTTTCAATTAATAA
AATTTGAACAAAGTACTTAGCATTGAGCTTTCAAGTGAG
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protein sequence of rna2095

>rna2095-protein ID=rna2095-protein|Name=rna2095|organism=Nannochloropsis gaditana|type=polypeptide|length=274bp
MHHLHTSVEAKSSLFSSSRFSESTTSSLNTAHSFSELGGPAGKHKAAVRS
LGWRSIYMFVSLLALLGATGSQSKIVEFICKQLGGSNKCPAMPTCPAGEA
LRHKPHSKPSYDGCGTHGVKVSLSPTDFSSCCNLHDLCYGQCGSPKKECD
EYFEGCMIAQCHREHHIPSNSSIDSHHHNPKRQSKELRRCVRAARLYYHG
VYGFGCFAYRKAQKQHCECGPIGEGEEGEGIVRERLAGGRGGESLGGLYA
LMERAAQAMTPTAGAVHWKWEEFL
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mRNA from alignment at CM002458.1:877065..878259+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2095 ID=rna2095|Name=rna2095|organism=Nannochloropsis gaditana|type=mRNA|length=1195bp|location=Sequence derived from alignment at CM002458.1:877065..878259+ (Nannochloropsis gaditana)
AATGTCCGCTATTCGTCGTCGTGTTCGCTTTGCCTTTTGACCACGTCCTT
ACTGAGGGGTTACTTACCATACATTACCACCCGCATATAGAAATTTGCGA
GCAATGCACCATCTTCATACCTCTGTCGAGGCTAAAAGCTCCTTGTTTTC
GAGTAGCAGATTCTCCGAGTCTACAACCTCATCGTTGAATACTGCTCACA
GTTTCTCCGAGCTTGGCGGGCCAGCAGGAAAACATAAGGCAGCTGTGAGG
TCATTGGGTTGGCGCAGCATCTACATGTTTGTGTCTTTGCTCGCATTATT
GGGAGCCACTGGAAGCCAAAGTAAAATTGTCGAATTTATCTGCAAACAGC
TGGGTGGGAGCAACAAGTGTCCGGCGATGCCCACGTGTCCAGCAGGAGAG
GCTTTGCGTCACAAACCGCACTCAAAGGTAAGGGTACAAGGTCACATTAT
GTTTCAAAACGCTTTTGTTAGTATGTTGGGGCGATGGTTCCCGTATTCTG
TCTTATAAATCCCCCTCTACCGGACGCTAACAGCCGTCTTACGATGGGTG
CGGGACCCACGGGGTCAAGGTGAGTCTGAGCCCAACGGACTTTTCATCAT
GCTGTAATCTACACGACCTGTGCTATGGTCAGTGTGGAAGCCCGAAAAAG
GAATGTGACGAGTATTTTGAAGGGTGCATGATAGCGCAATGTCACAGGGA
GCACCACATCCCTAGCAACAGCAGTATCGACAGTCATCACCACAATCCGA
AAAGGCAATCCAAGGAACTTAGACGCTGCGTGCGGGCAGCCAGATTGTAT
TATCACGGCGTGTATGGATTCGGTTGTTTTGCGTACAGAAAAGCTCAAAA
GCAGCACTGTGAGTGTGGGCCCataggcgagggagaggagggggaaggaa
tcGTAAGAGAACGACTCGCCGGTGGCCGCGGAGGTGAGAGTCTAGGAGGA
CTGTATGCCCTGATGGAGAGGGCGGCTCAAGCTATGACCCCGACGGCCGG
GGCGGTCCACTGGAAGTGGGAAGAATTTTTGTGAAGGGAATGCGCAGCGA
AAAGTTATGTGGAACAGGACCGGGACAAGCGGCGAAGGTGCATGACACCA
TGAATTTTCAATTCAAGACATGACAGCAGTGCCTCAGATTAACAAAAAGG
GTccgaaagggaaagaggagaaagaaagaaccGTACGATAAAGAG
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Coding sequence (CDS) from alignment at CM002458.1:877065..878259+

>rna2095 ID=rna2095|Name=rna2095|organism=Nannochloropsis gaditana|type=CDS|length=1650bp|location=Sequence derived from alignment at CM002458.1:877065..878259+ (Nannochloropsis gaditana)
ATGCACCATCTTCATACCTCTGTCGAGGCTAAAAGCTCCTTGTTTTCGAG
TAGCAGATTCTCCGAGTCTACAACCTCATCGTTGAATACTGCTCACAGTT
TCTCCGAGCTTGGCGGGCCAGCAGGAAAACATAAGGCAGCTGTGAGGTCA
TTGGGTTGGCGCAGCATCTACATGTTTGTGTCTTTGCTCGCATTATTGGG
AGCCACTGGAAGCCAAAGTAAAATTGTCGAATTTATCTGCAAACAGCTGG
GTGGGAGCAACAAGTGTCCGGCGATGCCCACGTGTCCAGCAGGAGAGGCT
TTGCGTCACAAACCGCACTCAAAGCCGTCTTACGATGGGTGCGGGACCCA
CGGGGTCAAGGTGAGTCTGAGCCCAACGGACTTTTCATCATGCTGTAATC
TACACGACCTGTGCTATGGTCAGTGTGGAAGCCCGAAAAAGGAATGTGAC
GAGTATTTTGAAGGGTGCATGATAGCGCAATGTCACAGGGAGCACCACAT
CCCTAGCAACAGCAGTATCGACAGTCATCACCACAATCCGAAAAGGCAAT
CCAAGGAACTTAGACGCTGCGTGCGGGCAGCCAGATTGTATTATCACGGC
GTGTATGGATTCGGTTGTTTTGCGTACAGAAAAGCTCAAAAGCAGCACTG
TGAGTGTGGGCCCataggcgagggagaggagggggaaggaatcGTAAGAG
AACGACTCGCCGGTGGCCGCGGAGGTGAGAGTCTAGGAGGACTGTATGCC
CTGATGGAGAGGGCGGCTCAAGCTATGACCCCGACGGCCGGGGCGGTCCA
CTGGAAGTGGGAAGAATTTTTGTGAATGCACCATCTTCATACCTCTGTCG
AGGCTAAAAGCTCCTTGTTTTCGAGTAGCAGATTCTCCGAGTCTACAACC
TCATCGTTGAATACTGCTCACAGTTTCTCCGAGCTTGGCGGGCCAGCAGG
AAAACATAAGGCAGCTGTGAGGTCATTGGGTTGGCGCAGCATCTACATGT
TTGTGTCTTTGCTCGCATTATTGGGAGCCACTGGAAGCCAAAGTAAAATT
GTCGAATTTATCTGCAAACAGCTGGGTGGGAGCAACAAGTGTCCGGCGAT
GCCCACGTGTCCAGCAGGAGAGGCTTTGCGTCACAAACCGCACTCAAAGC
CGTCTTACGATGGGTGCGGGACCCACGGGGTCAAGGTGAGTCTGAGCCCA
ACGGACTTTTCATCATGCTGTAATCTACACGACCTGTGCTATGGTCAGTG
TGGAAGCCCGAAAAAGGAATGTGACGAGTATTTTGAAGGGTGCATGATAG
CGCAATGTCACAGGGAGCACCACATCCCTAGCAACAGCAGTATCGACAGT
CATCACCACAATCCGAAAAGGCAATCCAAGGAACTTAGACGCTGCGTGCG
GGCAGCCAGATTGTATTATCACGGCGTGTATGGATTCGGTTGTTTTGCGT
ACAGAAAAGCTCAAAAGCAGCACTGTGAGTGTGGGCCCataggcgaggga
gaggagggggaaggaatcGTAAGAGAACGACTCGCCGGTGGCCGCGGAGG
TGAGAGTCTAGGAGGACTGTATGCCCTGATGGAGAGGGCGGCTCAAGCTA
TGACCCCGACGGCCGGGGCGGTCCACTGGAAGTGGGAAGAATTTTTGTGA
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Synonyms
Publications