rna2094, rna2094 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2094
Unique Name	rna2094
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2542
Alignment location	CM002458.1:873670..876588 +

Link to JBrowse

Properties


Property Name	Value
Product	amidase protein
Orig transcript id	gnl\|cribi\|Naga_100009g66.660.mrna
Orig protein id	gnl\|cribi\|Naga_100009g66.660
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:873670..876588 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g66	gene2003	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2094	rna2094-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28617.1	cds2086	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:873670..876588+
coding sequence from alignment at CM002458.1:873670..876588+

mRNA sequence

>rna2094 ID=rna2094|Name=rna2094|organism=Nannochloropsis gaditana|type=mRNA|length=2542bp
AGCCGAGAGACGTCCGGCGGCAAGGGCTGGCTTTTTCAGAGAGAGGGTGA
AAAGCATAGCTGTATAACTAGTAAGCGGGAGGCTGTGCGGTGGGCGGCGT
GAAGTCGTGGTGTGAGAGCTATGAATACAAAAGAGATGATACTGTCCGCA
GCGACAGGCAGCCGGAAGGAGAGCCGCTCTCCAAATGCGTGGTCCTATCA
CCCATTTGTCGAATGTTCAAAGAGGCACACAGATGAGCGCAAAATCCATT
GATTTAAGAAGGCACATCACTAAGCCAAGCATGTAAAGAGCAGTGGATAT
TTCGTGTCACCGTCACTGCAACCGCCAACCTCCTCCCCCTCCTCAGCGGA
TTGCTTCCAAGACGCCTGTCCGATAGTTGGATTTCAGACGTGGTCCAGCC
TGCCCAGCACTCAACTCAGCGACAGCAGCCTAAAAAGCTTCACGCTTGAT
GGAGTCTAGCACAGATCGTCAATTTCAGGCATCTTACGGCGTTTAAAAAC
CCGGTCGCTCGCTTGTGGTGTCTGTATTTGTTCTCCAAAGCGAAATGCTT
TTGGCAAAGGAAGCTATGTTGTGAGGTATTTTAAGGCCTTCATCCTCCCC
ACACAGCACTGCTGCTCTGCAATAAGCTTCTGCGGACATGTTCTGGTGGC
TCTCAACAGCAGCTGAGCGCCTGCAACGAAAAGCAAGAGCGAAACGCGCG
GAATTCGAAGCCAAATGGGCACAACCTCTACCGCCTCTGGCGCCTGAGCT
GGATGCGGCCAAGGAGACGAAAATTGCTTTGGAGTTATCGATCGAAGACC
TCGTAGCACTCATGCAGGACGGCACTTTCTCTTCGCACGACGTGGTAAGC
GTATTGGCCAAACGCGCAAGAGAGTTTGGGGGACCGGCAGGGGTCAACGC
CTTGACGGACGTGCTTTTCGAGGAGGCGTTCGTCGAGGCCAGAAGAAAAG
ATCGCGACCGACAACGGGGGGGGGGCGAGAGTGACGCTGTGGGGGTGCTC
GAAGGAATTCCTCTGTCCGTCAAGGACCACATCGATGTCAAAGGCACCGA
TTCCACCACGGGGGCCGCCTGTCGATGCTTCCGGCCCGCCAGCAAGGACG
CCTTGGTGGTGGAACTATTGCGGGACGCGGGGGCCATCGTCCTGTGCAAG
ACCAACGTGCCCCAATGCCTCATGCTTCCTGAAACCAGCAACAACATTTG
GGGCGTCACGTCCTCACCCTGGAACCTCACACGCTCTGCGGGGGGCAGCA
GCGGCGGCGAGGCTGCCTTGGTGGCGGTTCGAGGGAGCTTGGTAGGGATC
GGAACGGACATCGGCGGCTCCTGTCGGGGACCCGCCCATTTCAGCGGCTG
CGTCGGATTTAAGCCGACGCCCGCCCGGGTCTCGGGGAAAGGGATCGTCA
TGCCCTCGAAAAGCGGAAAGATGGGCATGCAGGCGATCAGAGCGACGGCG
GGGCCACTGGCCAACCGCGTGGAGGACGTGGCCTTGGTATGTCAGGCCTG
GTGGGTGAATAAGATGTGGGCTCGTGACCCCTACGTGGTGCCCCTACCCT
TCGACCACGCGGCCTACCGACGAGGCGTGACCAAGGAAGCGCAGCAATGG
GAGCGAGGGGGGGGGGGAGAGCAGACTAGGGATGGGGGGAAGGGGAGGCA
AGAAGAAGCGAGTTCGCCAGGGGGGCGGAAAATCCGATTGGGCTGGTTCT
TGAGCGACGACTTTTTTGAGCCTTGCCGGGCAGGGAAACGCGCGGTTCGC
GAAGCGAAGCAAGCTTTGGAGTCGACAGGAAAGTACGAGCTAGTAGAGAT
GCGCTTGAGCACAGCAACCGATGGCTGGGAGGCCGTGCGCCTTTATTACA
ACATCATGACGGCCGAGGGAGGCCTGCGGAGTTACATCGACGCCCTGGAA
GGAGAAGCGATGATCCCGATGTATCGGAACATACGACTTGCCGCCTGCTT
CCCCGATTTCTTGCGACCCCTGCTCCACACCGCCTTGTACTTGACAGGAG
AGAAACGGAGACGTTTCTTGGTCAAAAATATGCGGCGTGATGGGCTGGCA
ACGCGGACCTACTGGCAGTACTGCGAGGAGCTTCAGAACTATCAAGAGGC
GTGGACTCGAATGATGCAAACGCAGAAACTGGATGGGTTTTTATGTCCAA
GCGTGGCTTTACCTGCTTTTCCTCACGGATGGTCGTCGCATTTGGAAAGC
TCGTGTTCTTACAATCTATTTTTGAACCTCCTTCACTACCCTGCTGGAGT
GATACCGGTCACTCAAGTGCGGGCCGATGAAGCCGTCTATCCCATAAGCG
ATCTCCCCCGCATGCAGCGGGATTCTATCGCACGAGCCGCTGCGATAGCT
ATGCAAGGGAGCGAGGCCTTGCCTGTGAGCGTGCAAGTCGCATTCCCACC
TTTTCAGGATGAGATGTGCCTTCACGTCATGAAGGATTTACAGGACGCTG
TTGGATTCACGGCTTTACCGCCTTATGCGAAGCGATCCGTTTTCAATTAA
TAAAATTTGAACAAAGTACTTAGCATTGAGCTTTCAAGTGAG

protein sequence of rna2094

>rna2094-protein ID=rna2094-protein|Name=rna2094|organism=Nannochloropsis gaditana|type=polypeptide|length=620bp
MFWWLSTAAERLQRKARAKRAEFEAKWAQPLPPLAPELDAAKETKIALEL
SIEDLVALMQDGTFSSHDVVSVLAKRAREFGGPAGVNALTDVLFEEAFVE
ARRKDRDRQRGGGESDAVGVLEGIPLSVKDHIDVKGTDSTTGAACRCFRP
ASKDALVVELLRDAGAIVLCKTNVPQCLMLPETSNNIWGVTSSPWNLTRS
AGGSSGGEAALVAVRGSLVGIGTDIGGSCRGPAHFSGCVGFKPTPARVSG
KGIVMPSKSGKMGMQAIRATAGPLANRVEDVALVCQAWWVNKMWARDPYV
VPLPFDHAAYRRGVTKEAQQWERGGGGEQTRDGGKGRQEEASSPGGRKIR
LGWFLSDDFFEPCRAGKRAVREAKQALESTGKYELVEMRLSTATDGWEAV
RLYYNIMTAEGGLRSYIDALEGEAMIPMYRNIRLAACFPDFLRPLLHTAL
YLTGEKRRRFLVKNMRRDGLATRTYWQYCEELQNYQEAWTRMMQTQKLDG
FLCPSVALPAFPHGWSSHLESSCSYNLFLNLLHYPAGVIPVTQVRADEAV
YPISDLPRMQRDSIARAAAIAMQGSEALPVSVQVAFPPFQDEMCLHVMKD
LQDAVGFTALPPYAKRSVFN

mRNA from alignment at CM002458.1:873670..876588+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2094 ID=rna2094|Name=rna2094|organism=Nannochloropsis gaditana|type=mRNA|length=2919bp|location=Sequence derived from alignment at CM002458.1:873670..876588+ (Nannochloropsis gaditana)
AGCCGAGAGACGTCCGGCGGCAAGGGCTGGCTTTTTCAGAGAGAGGGTGA
AAAGCATAGCTGTATAACTAGTAAGCGGGAGGCTGTGCGGTGGGCGGCGT
GAAGTCGTGGTGTGAGAGCTATGAATACAAAAGAGATGATACTGTCCGCA
GCGACAGGCAGCCGGAAGGAGAGCCGCTCTCCAAATGCGTGGTCCTATCA
CCCATTTGTCGAATGTTCAAAGAGGCACACAGATGAGCGCAAAATCCATT
GATTTAAGAAGGCACATCACTAAGCCAAGCATGTAAAGAGCAGTGGATAT
TTCGTGTCACCGTCACTGCAAccgccaacctcctccccctcctcagcGGA
TTGCTTCCAAGACGCCTGTCCGATAGTTGGATTTCAGACGTGGTCCAGCC
TGCCCAGCACTCAACTCAGCGACAGGTACGTTGGAGCAAGGATAGTGGGC
GATATATTGCGACAGAGGGATCTTAACCTTGAAGTCGTGCCGCGACATAG
TGAGACCAGTACAACCAATCTGGGTCCCGATACACGACGTGTATGTCCTA
TTTCCCCCACAAGATTATCGAGCCTCCATTCATTCATTTCTCAGTGATCT
TTTGCATGGCCCGTGATACGTAGTTACGTACGCCGTACGTTCGACGGACC
GTGTGTCGCATAAACGGTTTTGTTACCAGACTGAGCCGCATTCAGTACGT
TGTGTCTTAAGTTAGATATGTTGTTTTCTCTAATCTATCTTACCATAGTG
GTTGAGAGATTGACCTCAAACTATCCATTTCATTTGCCTCTGTCACGTTC
AGCAGCCTAAAAAGCTTCACGCTTGATGGAGTCTAGCACAGATCGTCAAT
TTCAGGCATCTTACGGCGTTTAAAAACCCGGTCGCTCGCTTGTGGTGTCT
GTATTTGTTCTCCAAAGCGAAATGCTTTTGGCAAAGGAAGCTATGTTGTG
AGGTATTTTAaggccttcatcctccccacaCAGCACTGCTGCTCTGCAAT
AAGCTTCTGCGGACATGTTCTGGTGGCTCTCAACAGCAGCTGAGCGCCTG
CAACGAAAAGCAAGAGCGAAACGCGCGGAATTCGAAGCCAAATGGGCACA
ACCTCTACCGCCTCTGGCGCCTGAGCTGGATGCGGCCAAGGAGACGAAAA
TTGCTTTGGAGTTATCGATCGAAGACCTCGTAGCACTCATGCAGGACGGC
ACTTTCTCTTCGCACGACGTGGTAAGCGTATTGGCCAAACGCGCAAGAGA
GTTTGGGGGACCGGCAGGGGTCAACGCCTTGACGGACGTGCTTTTCGAGG
AGGCGTTCGTCGAGGCCAGAAGAAAAGATCGCGACCGacaacgggggggg
ggcgagagtGACGCTGTGGGGGTGCTCGAAGGAATTCCTCTGTCCGTCAA
GGACCACATCGATGTCAAAGGCACCGATTCCACCACGGGGGCCGCCTGTC
GATGCTTCCGGCCCGCCAGCAAGGACGCCTTGGTGGTGGAACTATTGCGG
GACGCGGGGGCCATCGTCCTGTGCAAGACCAACGTGCCCCAATGCCTCAT
GCTTCCTGAAACCAGCAACAACATTTGGGGCGTCACGTCCTCACCCTGGA
ACCTCACACGCTCTGCGGggggcagcagcggcggcgagGCTGCCTTGGTG
GCGGTTCGAGGGAGCTTGGTAGGGATCGGAACGGACATCGGCGGCTCCTG
TCGGGGACCCGCCCATTTCAGCGGCTGCGTCGGATTTAAGCCGACGCCCG
CCCGGGTCtcggggaaagggatcgTCATGCCCTCGAAAAGCGGAAAGATG
GGCATGCAGGCGATCAGAGCGACGGCGGGGCCACTGGCCAaccgcgtgga
ggacgtggccttGGTATGTCAGGCCTGGTGGGTGAATAAGATGTGGGCTC
GTGACCCCTACGTGGTGCCCCTACCCTTCGACCACGCGGCCTACCGACGA
GGCGTGACCAAGGAAGCGCAGCaatgggagcgagggggggggggagagca
gactagggatggggggaaggggaggcaagaagaagcgagTTCGCCAGGGG
GGCGGAAAATCCGATTGGGCTGGTTCTTGAGCGACGACTTTTTTGAGCCT
TGCCGGGCAGGGAAACGCGCGGTTCGCGAAGCGAAGCAAGCTTTGGAGTC
GACAGGAAAGTACGAGCTAGTAGAGATGCGCTTGAGCACAGCAACCGATG
GCTGGGAGGCCGTGCGCCTTTATTACAACATCATGACGGCCGAGGGAGGC
CTGCGGAGTTACATCGACGCcctggaaggagaagcgatGATCCCGATGTA
TCGGAACATACGACTTGCCGCCTGCTTCCCCGATTTCTTGCGACCCCTGC
TCCACACCGCCTTGTACTTGACAGGAGAGAAACGGAGACGTTTCTTGGTC
AAAAATATGCGGCGTGATGGGCTGGCAACGCGGACCTACTGGCAGTACTG
CGAGGAGCTTCAGAACTATCAAGAGGCGTGGACTCGAATGATGCAAACGC
AGAAACTGGATGGGTTTTTATGTCCAAGCGTGGCTTTACCTGCTTTTCCT
CACGGATGGTCGTCGCATTTGGAAAGCTCGTGTTCTTACAATCTATTTTT
GAACCTCCTTCACTACCCTGCTGGAGTGATACCGGTCACTCAAGTGCGGG
CCGATGAAGCCGTCTATCCCATAAGCGATCTCCCCCGCATGCAGCGGGAT
TCTATCGCACGAGCCGCTGCGATAGCTATGCAAGGGAGCGAGGCCTTGCC
TGTGAGCGTGCAAGTCGCATTCCCACCTTTTCAGGATGAGATGTGCCTTC
ACGTCATGAAGGATTTACAGGACGCTGTTGGATTCACGGCTTTACCGCCT
TATGCGAAGCGATCCGTTTTCAATTAATAAAATTTGAACAAAGTACTTAG
CATTGAGCTTTCAAGTGAG

Coding sequence (CDS) from alignment at CM002458.1:873670..876588+

>rna2094 ID=rna2094|Name=rna2094|organism=Nannochloropsis gaditana|type=CDS|length=1863bp|location=Sequence derived from alignment at CM002458.1:873670..876588+ (Nannochloropsis gaditana)
ATGTTCTGGTGGCTCTCAACAGCAGCTGAGCGCCTGCAACGAAAAGCAAG
AGCGAAACGCGCGGAATTCGAAGCCAAATGGGCACAACCTCTACCGCCTC
TGGCGCCTGAGCTGGATGCGGCCAAGGAGACGAAAATTGCTTTGGAGTTA
TCGATCGAAGACCTCGTAGCACTCATGCAGGACGGCACTTTCTCTTCGCA
CGACGTGGTAAGCGTATTGGCCAAACGCGCAAGAGAGTTTGGGGGACCGG
CAGGGGTCAACGCCTTGACGGACGTGCTTTTCGAGGAGGCGTTCGTCGAG
GCCAGAAGAAAAGATCGCGACCGacaacggggggggggcgagagtGACGC
TGTGGGGGTGCTCGAAGGAATTCCTCTGTCCGTCAAGGACCACATCGATG
TCAAAGGCACCGATTCCACCACGGGGGCCGCCTGTCGATGCTTCCGGCCC
GCCAGCAAGGACGCCTTGGTGGTGGAACTATTGCGGGACGCGGGGGCCAT
CGTCCTGTGCAAGACCAACGTGCCCCAATGCCTCATGCTTCCTGAAACCA
GCAACAACATTTGGGGCGTCACGTCCTCACCCTGGAACCTCACACGCTCT
GCGGggggcagcagcggcggcgagGCTGCCTTGGTGGCGGTTCGAGGGAG
CTTGGTAGGGATCGGAACGGACATCGGCGGCTCCTGTCGGGGACCCGCCC
ATTTCAGCGGCTGCGTCGGATTTAAGCCGACGCCCGCCCGGGTCtcgggg
aaagggatcgTCATGCCCTCGAAAAGCGGAAAGATGGGCATGCAGGCGAT
CAGAGCGACGGCGGGGCCACTGGCCAaccgcgtggaggacgtggccttGG
TATGTCAGGCCTGGTGGGTGAATAAGATGTGGGCTCGTGACCCCTACGTG
GTGCCCCTACCCTTCGACCACGCGGCCTACCGACGAGGCGTGACCAAGGA
AGCGCAGCaatgggagcgagggggggggggagagcagactagggatgggg
ggaaggggaggcaagaagaagcgagTTCGCCAGGGGGGCGGAAAATCCGA
TTGGGCTGGTTCTTGAGCGACGACTTTTTTGAGCCTTGCCGGGCAGGGAA
ACGCGCGGTTCGCGAAGCGAAGCAAGCTTTGGAGTCGACAGGAAAGTACG
AGCTAGTAGAGATGCGCTTGAGCACAGCAACCGATGGCTGGGAGGCCGTG
CGCCTTTATTACAACATCATGACGGCCGAGGGAGGCCTGCGGAGTTACAT
CGACGCcctggaaggagaagcgatGATCCCGATGTATCGGAACATACGAC
TTGCCGCCTGCTTCCCCGATTTCTTGCGACCCCTGCTCCACACCGCCTTG
TACTTGACAGGAGAGAAACGGAGACGTTTCTTGGTCAAAAATATGCGGCG
TGATGGGCTGGCAACGCGGACCTACTGGCAGTACTGCGAGGAGCTTCAGA
ACTATCAAGAGGCGTGGACTCGAATGATGCAAACGCAGAAACTGGATGGG
TTTTTATGTCCAAGCGTGGCTTTACCTGCTTTTCCTCACGGATGGTCGTC
GCATTTGGAAAGCTCGTGTTCTTACAATCTATTTTTGAACCTCCTTCACT
ACCCTGCTGGAGTGATACCGGTCACTCAAGTGCGGGCCGATGAAGCCGTC
TATCCCATAAGCGATCTCCCCCGCATGCAGCGGGATTCTATCGCACGAGC
CGCTGCGATAGCTATGCAAGGGAGCGAGGCCTTGCCTGTGAGCGTGCAAG
TCGCATTCCCACCTTTTCAGGATGAGATGTGCCTTCACGTCATGAAGGAT
TTACAGGACGCTGTTGGATTCACGGCTTTACCGCCTTATGCGAAGCGATC
CGTTTTCAATTAA

Synonyms

Publications