rna209, rna209 (mRNA) Nannochloropsis gaditana

Overview
Namerna209
Unique Namerna209
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1600
Alignment locationCM002455.1:536839..537515 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100013g6.9773.mrna
Orig protein idgnl|cribi|Naga_100013g6.9773
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:536839..537515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g6gene200Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30485.1cds209Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna209rna209-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna209 ID=rna209|Name=rna209|organism=Nannochloropsis gaditana|type=mRNA|length=1600bp
ACATCCTCTGTTTTACTTTCGCACTGCGAAAATCCTAACAATCTTTTGCT
GAATTTTTCGTGAGACTGACTCTACTGCCACTCATCTGTTGTAGGTGGGC
CTGGAGCGGAGCCTTCATTTCTGGCGCGGCCGGTATCATATCAACGGTTG
CTGCTCCTCCACCCCTCATCACCTATGGCGTGCACTGAAAGGGATGGTCG
AAGAATGAGAAGACGAGTCGCAGGAAGTGGTGCCGTACTTCTTGCATATA
TGGTGGGCATCAGCTCGGCCTTCATCCTTTCCCCGGCGAAATTCTCCGGC
AGCAGTACCACTACTACTAGATGGAGCAATAGGAGAAGATGCGTTGTCCC
TAACCCCTCCACGTCCCCGACCTCTCTTCAGGCCTCAGCCTTCGAGAATT
TAGGCATGCCCCCCATTAGACCACGGGGTTCCAGAGACCAGAAGCTGGAG
GAGGAAGCAGAAGAGAGCACCTTGGCTGGAGAAGCTGTGGAGGCTCCTCC
TGTCCGGCCTGTCCCTGAGCTTATAACCATGAATGCCTTCGGCCTCCTGA
TCGAGCCGACGGACGAGGTGGGTCTTTTTTTCCGTGAGGTCTTTATGAAG
CACTATGACTACAAGGTACGTCTGCCACGTCCCGAGCGCTTCACTGTCGC
ATTTGACAAAGCGTACGATGCTCGTCGGTCGGAGTACCCAAACTTCGGCG
CGAAAGCGGGCATGAGTGCGGAGGAATGGTGGGCCCCGATCTTCTACAAG
ACCTTCCTGGATGTGGGCTTCCCCAAGGAGGACCTGGACGAGGTATTCGT
GGGCGTGTTTGAAGAGTTATACTATGAGTCTCTGACGAGTGAATGGGCCT
GGGAGACCGTGGACGACGTCTTGCCGATGATGGACAAGCTGCAGGAGTGG
CGGATGCAGGGCGGGCCCAAGCTGGGCGTGATATGTGATTACGACGAGCG
CCTCATCACAATTTTGGAAAATTTGGACATATTGCATTACTTCGATGTTG
TCGTCTCCTCGCGTGAGTCGGGTGCCGGTAAGCCTGATCCTCGTCCGTTC
TTGCTGGCGATGGAGAAAGCAGGGGTGAAGGACCCTAAAAAGGTGATGCA
CCTGGGGCGAAACTTTGACCACGACGTGGTAGGGGCAGCGGCGGCGGGAA
TGGATTCCATGTGGGTTGTGATGCCATCATACGACTACCTAGAGCCGGAG
CAGGAGGCTCGGCAGGTGGAATTCACCAAAATTGGGGACTTGGAGGCAGT
ATTGACCATGTTCGACAAGAGTGATCCCGATCGTCTGATCAGCACCACGG
ACAAGAACAAAAACAGACAGGGACATCTGCGCGTGCAGTACTAAAGAGAT
TTTTTAATCAGTCTGGAATGTTTGAAGAGAGGAGAAATATAAGGAGGAAG
AGGGAGAGTATGGTCAGCGGGCTCTTTTCCGGTGACCCTGATGGGAAGAA
GGGTGCATTGGAAGCGAGATTGCCAAATAGCACGGCTACTTTGGTAAAAG
AGGTATTGAACGGCAACAGGAATGTCGGTTTAACTTTTTGACAACGAGCT
ACATAGAAAAGAAAGACCGGAAGAATCAGCAAACAGGGACAGGTCATGCA
back to top

protein sequence of rna209

>rna209-protein ID=rna209-protein|Name=rna209|organism=Nannochloropsis gaditana|type=polypeptide|length=186bp
MNRLPIRGSGSSEDERPSKETLKKAARVRIDVLAGSLRGLGYGLLLGAGG
FPLLKRFLPITWQGSKHHVFIALATSALGSFVGSATATRNSLEHVVSGLQ
RVVPPEVQAAEDAFRRRRKALATKENTNISQNEREGGFWGLPPEPGNGLG
DTRYRQSGPAENLRHGKPPTTSSEGAPVNHSEPRSF
back to top

mRNA from alignment at CM002455.1:536839..537515-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna209 ID=rna209|Name=rna209|organism=Nannochloropsis gaditana|type=mRNA|length=677bp|location=Sequence derived from alignment at CM002455.1:536839..537515- (Nannochloropsis gaditana)
TGAGGGAATATTATTCAGCCTATCCACAACTTCTTCATATGCCACAGTTT
CACGGATGAATCGACTGCCTATACGTGGTTCAGGTTCCAGCGAGGACGAA
CGTCCTTCTAAGGAGACGCTTAAGAAAGCTGCTCGGGTTCGCATCGATGT
TTTGGCGGGGAGTCTCCGGGGTCTGGGATATGGTCTGTTGTTAGGAGCAG
GAGGATTTCCTTTGCTGAAGCGTTTTTTGCCAATTACATGGCAAGGCTCT
AAGCATCATGTATTTATTGCTCTTGCGACGAGCGCATTGGGCAGCTTTGT
CGGGTCTGCAACGGCGACCCGCAATTCGCTGGAGCACGTTGTATCTGGCT
TGCAGCGGGTAGTGCCCCCAGAGGTGCAAGCGGCAGAAGACGCGTTTCGA
CGGCGACGGAAAGCCCTTGCAACCAAAGAAAACACAAACATCAGCCAAAA
TGAACGGGAGGGGGGCTTCTGGGGGCTGCCTCCTGAGCCCGGCAATGGGT
TGGGTGACACGCGATACCGTCAGAGTGGACCGGCCGAGAATCTGCGACAC
GGGAAGCCACCTACCACATCTTCAGAGGGCGCACCGGTAAATCACTCTGA
ACCACGCTCCTTTTGAACCGTAAAACAAAATGGTTCTAGAACTCATGCTG
CCTTTTGCATGACCTGTCCCTGTTTGC
back to top

Coding sequence (CDS) from alignment at CM002455.1:536839..537515-

>rna209 ID=rna209|Name=rna209|organism=Nannochloropsis gaditana|type=CDS|length=561bp|location=Sequence derived from alignment at CM002455.1:536839..537515- (Nannochloropsis gaditana)
ATGAATCGACTGCCTATACGTGGTTCAGGTTCCAGCGAGGACGAACGTCC
TTCTAAGGAGACGCTTAAGAAAGCTGCTCGGGTTCGCATCGATGTTTTGG
CGGGGAGTCTCCGGGGTCTGGGATATGGTCTGTTGTTAGGAGCAGGAGGA
TTTCCTTTGCTGAAGCGTTTTTTGCCAATTACATGGCAAGGCTCTAAGCA
TCATGTATTTATTGCTCTTGCGACGAGCGCATTGGGCAGCTTTGTCGGGT
CTGCAACGGCGACCCGCAATTCGCTGGAGCACGTTGTATCTGGCTTGCAG
CGGGTAGTGCCCCCAGAGGTGCAAGCGGCAGAAGACGCGTTTCGACGGCG
ACGGAAAGCCCTTGCAACCAAAGAAAACACAAACATCAGCCAAAATGAAC
GGGAGGGGGGCTTCTGGGGGCTGCCTCCTGAGCCCGGCAATGGGTTGGGT
GACACGCGATACCGTCAGAGTGGACCGGCCGAGAATCTGCGACACGGGAA
GCCACCTACCACATCTTCAGAGGGCGCACCGGTAAATCACTCTGAACCAC
GCTCCTTTTGA
back to top
Synonyms
Publications